prot_H-elongata_contig172621.4463.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig172621.4463.1
Unique Name	prot_H-elongata_contig172621.4463.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	92

Homology

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BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: D7G858_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G858_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.050e-22
Identity = 55/93 (59.14%), Postives = 62/93 (66.67%), Query Frame = 0

Query:    8 PRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGD----------DVKEAFTGRGVAVNSGE 90
            P   EKVPVWTADYVLGSYGTGAVMAVPAHDERD AFA+ F+L +RRVV+P+                        +V EAFTGRGVA+NSGE
Sbjct:  331 PITGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLAFARTFELPVRRVVKPSGGKXXXXXXXXXXXXXXXXXXXXXEVVEAFTGRGVAINSGE 423

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BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A7C5QST9_9CHLR (Leucine--tRNA ligase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5QST9_9CHLR)

HSP 1 Score: 100 bits (248), Expect = 1.430e-22
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 0

Query:    3 YVLSPPRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNSG 89
            Y ++P    E++P+W ADYVL  YGTGA+MAVPAHDERD+AFA+A  L IR V++P+ P  G E   EGG+ + EA+TG GV VNSG
Sbjct:  308 YAINPANG-ERIPIWVADYVLVGYGTGAIMAVPAHDERDYAFARAHALPIRVVIQPSGPPEG-ESRKEGGEALAEAYTGEGVLVNSG 392

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BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A7S3BNW9_9VIRI (Leucine--tRNA ligase n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BNW9_9VIRI)

HSP 1 Score: 95.9 bits (237), Expect = 4.070e-21
Identity = 50/81 (61.73%), Postives = 56/81 (69.14%), Query Frame = 0

Query:    8 PRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNS 88
            P   E VPVW ADYVLGSYGTGA+MAVPAHD RD  FA+A D+ ++ VVRPA  N   E  +EGG    EAF G GV VNS
Sbjct:    5 PATGEGVPVWVADYVLGSYGTGAIMAVPAHDARDLEFARAMDIAVKEVVRPADANENYESPAEGG----EAFGGAGVMVNS 81

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BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A7C3KJZ4_9CHLR (Leucine--tRNA ligase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3KJZ4_9CHLR)

HSP 1 Score: 95.9 bits (237), Expect = 4.370e-21
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 0

Query:    3 YVLSPPRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAA----PNAGAEGESEGGDDVKEAFTGRGVAVNSG 89
            Y ++P    E++P+W ADYVL SYGTGA+MAVPAHDERDFAFA+ +DL I  V+RP      P+    G+   G ++KEA+ G GV VNSG
Sbjct:  333 YAINPVNG-ERIPIWIADYVLMSYGTGAIMAVPAHDERDFAFAKKYDLPIVEVIRPEPSPLHPSPSGRGDGGEGGELKEAYIGAGVMVNSG 422

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BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A8B5WZB2_9SPIO (Leucine--tRNA ligase n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A8B5WZB2_9SPIO)

HSP 1 Score: 95.1 bits (235), Expect = 8.130e-21
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0

Query:    2 SYVLSPPRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNSGE 90
            +Y ++P    EK+P+W +DY+L SYGTGA+MAVPAHDERDF FA  F L I  VV P A  A   G  EGG   K +FTG GVA+NSGE
Sbjct:  319 AYAINPVND-EKIPIWISDYILISYGTGAIMAVPAHDERDFEFATKFSLPIVEVVAPPAARAEGSGLPEGG---KRSFTGDGVAINSGE 403

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BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A535ZTQ2_9CHLR (Leucine--tRNA ligase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535ZTQ2_9CHLR)

HSP 1 Score: 94.7 bits (234), Expect = 1.110e-20
Identity = 49/79 (62.03%), Postives = 57/79 (72.15%), Query Frame = 0

Query:   12 EKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNSGE 90
            EKVP+W ADYVL +YGTGA+MAVPAHDERDFAFAQ F L IR V+RP        GE    DD+ EA+ G G+ VNSG+
Sbjct:  326 EKVPIWVADYVLATYGTGAIMAVPAHDERDFAFAQKFRLPIREVIRPPG------GED---DDLHEAYVGPGLMVNSGQ 395

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BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A2M7XEP6_9BACT (Leucine--tRNA ligase n=1 Tax=Candidatus Uhrbacteria bacterium CG_4_9_14_3_um_filter_50_9 TaxID=1975035 RepID=A0A2M7XEP6_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 1.110e-20
Identity = 53/96 (55.21%), Postives = 64/96 (66.67%), Query Frame = 0

Query:    2 SYVLSPPRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAA------PNAG-AEGESEGGDDVKEAFTGRGVAVNSGE 90
            +Y ++P   + K+PVW ADYVLG YGTGA+MAVPAHDERDFAFA+ F+L I +VV P        P+ G + G       V E FTG GVAVNSGE
Sbjct:  311 AYAINPVTGK-KIPVWVADYVLGGYGTGAIMAVPAHDERDFAFAKMFELPIVKVVEPEVLQNIIHPDVGISHGMQSDVKVVHECFTGEGVAVNSGE 405

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BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A8J5XLP7_DIALT (Leucine--tRNA ligase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLP7_DIALT)

HSP 1 Score: 94.7 bits (234), Expect = 1.120e-20
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 0

Query:    8 PRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVV-RPAAPNAGAEGESEG---GDDVKEAFTGRGVAVNSGE 90
            P   E +PVW +DYV+G YGTGAVMAVPAHDERDFAFAQAF L +++V+ RPA   AGA+GE+ G   G  + +A T  GV VNSGE
Sbjct:  378 PLTGEPLPVWVSDYVIGGYGTGAVMAVPAHDERDFAFAQAFGLPVKQVIARPAG--AGADGEAGGALDGGALAQALTEDGVLVNSGE 462

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BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A399ZEA0_9CHLR (Leucine--tRNA ligase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A399ZEA0_9CHLR)

HSP 1 Score: 94.0 bits (232), Expect = 2.070e-20
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 0

Query:    3 YVLSPPRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNSG 89
            Y ++P    E++P+W ADYVL SYGTGA+MAVPAHDERDFAFA+ + L I  V+RP   NAG     E G +++E + G GV VNSG
Sbjct:  318 YAINPVNG-ERIPIWIADYVLMSYGTGAIMAVPAHDERDFAFAKKYGLPIIEVIRPETQNAG-----EDGKELEETYDGAGVMVNSG 398

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BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: UPI0016894AA7 (Leucine--tRNA ligase n=1 Tax=Leptolyngbya sp. FACHB-16 TaxID=2692800 RepID=UPI0016894AA7)

HSP 1 Score: 94.0 bits (232), Expect = 2.070e-20
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 0

Query:    2 SYVLSPPRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNSG 89
            SY ++P    EK+PVW ADYVL  YGTGA+MAVPAHDERDFAFA+ FDL ++ VV+P       EG+   GD + EA+ G GV V+SG
Sbjct:  309 SYAINPVNG-EKIPVWIADYVLMGYGTGAIMAVPAHDERDFAFARKFDLKVKVVVQP-------EGQELDGDTMAEAWPGDGVMVHSG 388

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot

BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G858_ECTSI	1.050e-22	59.14	Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879...	[more]
A0A7C5QST9_9CHLR	1.430e-22	57.47	Leucine--tRNA ligase n=1 Tax=Anaerolineae bacteriu...	[more]
A0A7S3BNW9_9VIRI	4.070e-21	61.73	Leucine--tRNA ligase n=1 Tax=Prasinoderma singular...	[more]
A0A7C3KJZ4_9CHLR	4.370e-21	53.85	Leucine--tRNA ligase n=1 Tax=Anaerolineae bacteriu...	[more]
A0A8B5WZB2_9SPIO	8.130e-21	57.30	Leucine--tRNA ligase n=1 Tax=Spirochaetaceae bacte...	[more]
A0A535ZTQ2_9CHLR	1.110e-20	62.03	Leucine--tRNA ligase n=1 Tax=Chloroflexi bacterium...	[more]
A0A2M7XEP6_9BACT	1.110e-20	55.21	Leucine--tRNA ligase n=1 Tax=Candidatus Uhrbacteri...	[more]
A0A8J5XLP7_DIALT	1.120e-20	60.92	Leucine--tRNA ligase n=1 Tax=Diacronema lutheri Ta...	[more]
A0A399ZEA0_9CHLR	2.070e-20	55.17	Leucine--tRNA ligase n=1 Tax=Anaerolineae bacteriu...	[more]
UPI0016894AA7	2.070e-20	56.82	Leucine--tRNA ligase n=1 Tax=Leptolyngbya sp. FACH...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009008	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	GENE3D	3.90.740.10		coord: 2..92 e-value: 1.9E-26 score: 95.0
IPR009008	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	SUPERFAMILY	50677	ValRS/IleRS/LeuRS editing domain	coord: 6..56
IPR025709	Leucyl-tRNA synthetase, editing domain	PFAM	PF13603	tRNA-synt_1_2	coord: 5..91 e-value: 6.8E-25 score: 87.7
None	No IPR available	PANTHER	PTHR43740:SF6	LEUCINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL	coord: 8..90
IPR002302	Leucine-tRNA ligase	PANTHER	PTHR43740	FAMILY NOT NAMED	coord: 8..90

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig172621	contig	H-elongata_contig172621:204..479 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig172621.4463.1	mRNA_H-elongata_contig172621.4463.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig172621 186..479 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig172621.4463.1 ID=prot_H-elongata_contig172621.4463.1|Name=mRNA_H-elongata_contig172621.4463.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MSYVLSPPRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDL
GIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNSGEVS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009008	Val/Leu/Ile-tRNA-synth_edit
IPR025709	Leu_tRNA-synth_edit
IPR002302	Leu-tRNA-ligase