mRNA_H-elongata_contig105390.446.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105390.446.1
Unique NamemRNA_H-elongata_contig105390.446.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig105390.446.1 vs. uniprot
Match: D7FMN7_ECTSI (Probable fusion protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN7_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 1.630e-78
Identity = 117/157 (74.52%), Postives = 141/157 (89.81%), Query Frame = 1
Query:    1 RAYGCGYCAAHCAALGTVWRGDSIFLAKNVAAMAPFPDPAMFTPQELAAINISKRVGPVPSVVTSEDIKDMASVFSEKEQEAVVNCCAVMGFLNRFMDTIGMTLEMEPLEIGVRKLAATGWKPGSAFDPEADAELIEEDRIEAIKRSERNSKSGFLS 471
            R YGCGYCAAHCAALGT+WRGDS+FLAKN+ AMAP PDP +FTP+EL+AINISK++GPVPS VT++DI+DMASV++EKEQE V+N   VMGFLNRFMDTIGMTLEMEPLE+G+ +LA TGW+ G ++DPEADAEL+ EDR+EA+KR+ER SKS FLS
Sbjct:   35 REYGCGYCAAHCAALGTIWRGDSVFLAKNIKAMAPEPDPEVFTPKELSAINISKKLGPVPSRVTADDIRDMASVYTEKEQEGVINSGVVMGFLNRFMDTIGMTLEMEPLEMGMEQLAPTGWEHGHSYDPEADAELMAEDRVEAVKRAERKSKSNFLS 191          
BLAST of mRNA_H-elongata_contig105390.446.1 vs. uniprot
Match: A0A6H5JWC3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWC3_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 6.550e-56
Identity = 91/156 (58.33%), Postives = 117/156 (75.00%), Query Frame = 1
Query:    1 RAYGCGYCAAHCAALGTVWRGDSIFLAKNVAAMAPFPDPAMFTPQELAAINISKRVGPVPSVVTSEDIKDMASVFSEKEQEAVVNCCAVMGFLNRFMDTIGMTLEMEPLEIGVRKLAATGWKPGSAFDPEADAELIEEDRIEAIKRSERNSKSGFL 468
            R YGC YCA+H A +GTVW+G  + L KN  AM   P+P +F+P+ELAAINI+K+VG VPS VT+ DI+ +A+ F+ KEQEAVVN C +MGFLNRFMD  GMTLEME +E  ++KLA +GW P  A+D +AD EL++EDR EA+KR +R   SGF 
Sbjct:  119 RTYGCAYCASHTAVMGTVWKGSGLTLDKNAMAMDEEPNPDVFSPKELAAINIAKKVGAVPSTVTTADIEMLATTFTRKEQEAVVNACTIMGFLNRFMDASGMTLEMEAIETSLQKLAPSGWVPNDAYDKDADVELMKEDREEAVKREKRKKSSGFF 274          
BLAST of mRNA_H-elongata_contig105390.446.1 vs. uniprot
Match: A0A6H5JXG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG8_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 3.560e-47
Identity = 84/168 (50.00%), Postives = 108/168 (64.29%), Query Frame = 1
Query:    7 YGCGYCAAHCAALGTVWRGDSIFLAKNVAAMAPFPDPAMFTPQELAAINISKRVGPVPSVVTSEDIKDMASVFSEKEQEAVVNCCAVMGFLNRFM-----------------DTIGMTLEMEPLEIGVRKLAATGWKPGSAFDPEADAELIEEDRIEAIKRSERNSKS 459
            +GC YC+AHCA LGT+ +G  +FL KN  AM P P P +F P+ELA INI K++G VP+ VTS+DI+ MA   + +EQE V+N   +MGFLNRFM                  T GMTLE+EPLE G + LA +GW  G +FDPE D EL+EEDR  A +R ER  ++
Sbjct:   41 FGCSYCSAHCAGLGTIRQGHDVFLTKNAQAMMPVPGPGVFNPKELAVINIGKKLGAVPNEVTSDDIQSMARALTSEEQECVINAMVLMGFLNRFMLMMTNDCFCSRMDESPRGTFGMTLELEPLETGNKHLAESGWTAGISFDPEGDEELMEEDRAMAERREERKKQA 208          
BLAST of mRNA_H-elongata_contig105390.446.1 vs. uniprot
Match: A0A0C2CZ51_9DELT (Putative fusion protein n=2 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C2CZ51_9DELT)

HSP 1 Score: 105 bits (261), Expect = 1.530e-23
Identity = 60/141 (42.55%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    1 RAYGCGYCAAHCAALGTVWRGDSIFLAKNVAAM-APFPDPAMFTPQELAAINISKRVGPVPSVVTSEDIKDMASVFSEKEQEAVVNCCAVMGFLNRFMDTIGMTLEMEPLEIGVRKLAATGWKPGSAFDPEADAELIEEDR 420
            R+YGC YC+AH A +GTV+RG    L +N  A+ A   D  +F   ++AAIN +  V  +PS VT E   D+A  +SE  +EA+V    +MGFLN  MD++GM LE   LEI  + L  + W+PG  +D   D ++IE D+
Sbjct:   98 RSYGCSYCSAHSAGVGTVFRGPGGSLERNKQALDAKSCD--LFGAADIAAINYATAVAKIPSEVTLEHRLDLARYYSETHEEAIVLAATLMGFLNCAMDSLGMVLEWRILEIAQQYLTPSDWQPGQNYDEAFDRDIIEADK 236          
BLAST of mRNA_H-elongata_contig105390.446.1 vs. uniprot
Match: A6G658_9DELT (Probable fusion protein n=1 Tax=Plesiocystis pacifica SIR-1 TaxID=391625 RepID=A6G658_9DELT)

HSP 1 Score: 97.8 bits (242), Expect = 5.260e-21
Identity = 54/145 (37.24%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    1 RAYGCGYCAAHCAALGTVWRGDSIFLAKNVAAMAPFPDPAMFTPQELAAINISKRVGPVPSVVTSEDIKDMASVFSEKEQEAVVNCCAVMGFLNRFMDTIGMTLEMEPLEIGVRKLAATGWKPGSAFDPEADAELIEEDRIEAIK 435
            R++GCGYC+AH A +GT++RG    L +N  AM P     +F+P + AAI+ +  +  VP+ +  E    +A  +SE  +E++V    +MGFLN  +D +GM LE   L    + L+ +GW+ G+ ++ E D EL+E D  E  K
Sbjct:   59 RSFGCGYCSAHAAGIGTMFRGAGGSLERNREAMNPQAC-NLFSPADQAAIDFANAIAEVPTGIREEHRIAIAKHYSEDHEESIVLSATLMGFLNCCIDVLGMVLERRMLHQAEQYLSGSGWEAGNKYEEEYDRELVEADPDEDTK 202          
BLAST of mRNA_H-elongata_contig105390.446.1 vs. uniprot
Match: A0A2S9YJQ3_9DELT (Uncharacterized protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9YJQ3_9DELT)

HSP 1 Score: 95.9 bits (237), Expect = 3.270e-20
Identity = 56/140 (40.00%), Postives = 81/140 (57.86%), Query Frame = 1
Query:    1 RAYGCGYCAAHCAALGTVWRGDSIFLAKNVAAMAPFPDPAMFTPQELAAINISKRVGPVPSVVTSEDIKDMASVFSEKEQEAVVNCCAVMGFLNRFMDTIGMTLEMEPLEIGVRKLAATGWKPGSAFDPEADAELIEEDR 420
            R+YGC YCAAH A +GTV+RG    LA+N  A+       +F   ++AAIN +  VG +PS VT +    +A  +SE  +EA+V    +MGFLN  MDT+GM LE   L+   + L  + W+P   +    D E+I+ D+
Sbjct:   97 RSYGCSYCAAHSAGIGTVFRGPGGSLARNKEALDAEAC-NLFGAADIAAINYATAVGRIPSEVTLDHRVGLARHYSETHEEAIVLAATLMGFLNCAMDTLGMVLEWGVLKNAQQYLTPSAWQPAQNYVEAYDREVIDADK 235          
BLAST of mRNA_H-elongata_contig105390.446.1 vs. uniprot
Match: UPI001CD33499 (hypothetical protein n=1 Tax=Cognatishimia sp. MH4019 TaxID=2854030 RepID=UPI001CD33499)

HSP 1 Score: 69.3 bits (168), Expect = 6.560e-12
Identity = 42/123 (34.15%), Postives = 63/123 (51.22%), Query Frame = 1
Query:    4 AYGCGYCAAHCAALGTVWRGDSIFLAKNVAAMAPFPDPAMFTPQELAAINISKRVGPVPSVVTSEDIKDMASVFSEKEQEAVVNCCAVMGFLNRFMDTIGMTLEMEPLEIGVRKLAATGWKPG 372
            A GC YC AH A +      D     + + A+  F   A+F+  E AA+  +     VP+ VT E + ++ + FSE E   ++ C +VMGF+NR+ D++  TLE  P +   R L   GW  G
Sbjct:   39 AAGCLYCQAHTAKIVATLSEDD----QKMEAIWEFEIHALFSEPERAALRFAMAAASVPNAVTDEMMDELRTHFSEDEIVELLACVSVMGFMNRWNDSLATTLEDGPCDAAERTLGKKGWSVG 157          
BLAST of mRNA_H-elongata_contig105390.446.1 vs. uniprot
Match: D7G5G2_ECTSI (Probable fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G2_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.010e-11
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  292 DTIGMTLEMEPLEIGVRKLAATGWKPGSAFDPEADAELIEEDRIEAIKRSERNSKS--GFLS 471
            DT+GMTLE+EPLE G   LA +GW  G +FDPE D EL+EEDR+ A +R ER  ++  GF S
Sbjct:   44 DTLGMTLELEPLETGNEHLAESGWTAGISFDPEGDEELMEEDRVMAERREERKKQACGGFTS 105          
BLAST of mRNA_H-elongata_contig105390.446.1 vs. uniprot
Match: UPI0019E81851 (Uncharacterized protein n=1 Tax=Chloroflexi bacterium AL-W TaxID=2686371 RepID=UPI0019E81851)

HSP 1 Score: 67.0 bits (162), Expect = 1.100e-10
Identity = 43/123 (34.96%), Postives = 59/123 (47.97%), Query Frame = 1
Query:    4 AYGCGYCAAHCAALGTVWRGDSIFLAKNVAAMAPFPDPAMFTPQELAAINISKRVGPVPSVVTSEDIKDMASVFSEKEQEAVVNCCAVMGFLNRFMDTIGMTLEMEPLEIGVRKLAATGWKPG 372
            A GC YC AH A    V   D     + +AA   F     FTP E AA+ +++    VP+ VT    + +   F+E     +V   A+MGFLNR+ DT+   LE +P     + LA   W PG
Sbjct:   73 AAGCRYCQAHAAHQAMVAGVD----VEKIAAAWEFDTDPRFTPAERAALRLARDGAVVPNAVTPPHFEALTMHFAEGAMVEIVAIIALMGFLNRWNDTMATQLEEKPQRFAEQHLARHNWSPG 191          
BLAST of mRNA_H-elongata_contig105390.446.1 vs. uniprot
Match: A0A239J8F8_9RHOB (Uncharacterized peroxidase-related enzyme n=2 Tax=Roseobacteraceae TaxID=2854170 RepID=A0A239J8F8_9RHOB)

HSP 1 Score: 66.2 bits (160), Expect = 2.130e-10
Identity = 40/123 (32.52%), Postives = 61/123 (49.59%), Query Frame = 1
Query:    4 AYGCGYCAAHCAALGTVWRGDSIFLAKNVAAMAPFPDPAMFTPQELAAINISKRVGPVPSVVTSEDIKDMASVFSEKEQEAVVNCCAVMGFLNRFMDTIGMTLEMEPLEIGVRKLAATGWKPG 372
            A GC YC AH A +      D     + +  +  F    +F+  E  A+  +     VP++VT E ++DM   FS+ E   ++ C +VMGF+NR+ D++  TLE  P E   R +   GW  G
Sbjct:   77 AAGCLYCQAHTARIVDDLSEDE----RKMETIWEFETSDLFSEAERVALRFAVSAASVPNLVTDELMEDMRQHFSDDEIVELLACVSVMGFMNRWNDSLATTLEQAPRESAERTIGKKGWTVG 195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105390.446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMN7_ECTSI1.630e-7874.52Probable fusion protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JWC3_9PHAE6.550e-5658.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JXG8_9PHAE3.560e-4750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0C2CZ51_9DELT1.530e-2342.55Putative fusion protein n=2 Tax=Enhygromyxa salina... [more]
A6G658_9DELT5.260e-2137.24Probable fusion protein n=1 Tax=Plesiocystis pacif... [more]
A0A2S9YJQ3_9DELT3.270e-2040.00Uncharacterized protein n=1 Tax=Enhygromyxa salina... [more]
UPI001CD334996.560e-1234.15hypothetical protein n=1 Tax=Cognatishimia sp. MH4... [more]
D7G5G2_ECTSI1.010e-1156.45Probable fusion protein n=1 Tax=Ectocarpus silicul... [more]
UPI0019E818511.100e-1034.96Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A239J8F8_9RHOB2.130e-1032.52Uncharacterized peroxidase-related enzyme n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105390contigH-elongata_contig105390:1078..2023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score104.0
Seed ortholog evalue6.6e-20
Seed eggNOG ortholog391625.PPSIR1_29453
EggNOG free text desc.hydroperoxide reductase activity
EggNOG OGsCOG2128@1,COG2128@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929586.7231793-CDS-H-elongata_contig105390:1077..13671622929586.7231793-CDS-H-elongata_contig105390:1077..1367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105390 1078..1367 +
1691679080.9444957-CDS-H-elongata_contig105390:1077..13671691679080.9444957-CDS-H-elongata_contig105390:1077..1367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105390 1078..1367 +
1622929586.7338483-CDS-H-elongata_contig105390:1842..20231622929586.7338483-CDS-H-elongata_contig105390:1842..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105390 1843..2023 +
1691679080.9539745-CDS-H-elongata_contig105390:1842..20231691679080.9539745-CDS-H-elongata_contig105390:1842..2023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105390 1843..2023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105390.446.1prot_H-elongata_contig105390.446.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105390 1078..2023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105390.446.1

>prot_H-elongata_contig105390.446.1 ID=prot_H-elongata_contig105390.446.1|Name=mRNA_H-elongata_contig105390.446.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
RAYGCGYCAAHCAALGTVWRGDSIFLAKNVAAMAPFPDPAMFTPQELAAI
NISKRVGPVPSVVTSEDIKDMASVFSEKEQEAVVNCCAVMGFLNRFMDTI
GMTLEMEPLEIGVRKLAATGWKPGSAFDPEADAELIEEDRIEAIKRSERN
SKSGFLS
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mRNA from alignment at H-elongata_contig105390:1078..2023+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105390.446.1 ID=mRNA_H-elongata_contig105390.446.1|Name=mRNA_H-elongata_contig105390.446.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=946bp|location=Sequence derived from alignment at H-elongata_contig105390:1078..2023+ (Himanthalia elongata Himel1 dioecious)
AGGGCCTACGGATGCGGCTACTGCGCCGCGCACTGCGCCGCGCTCGGGAC GGTTTGGCGCGGGGATAGCATCTTTCTCGCGAAGAACGTGGCCGCGATGG CCCCCTTCCCCGATCCGGCGATGTTCACACCCCAGGAGCTCGCGGCAATC AACATCTCCAAGAGGGTAGGGCCGGTGCCGAGCGTGGTGACCTCGGAGGA CATCAAAGACATGGCGTCAGTATTTTCCGAGAAAGAGCAGGAGGCCGTGG TAAACTGCTGCGCGGTCATGGGTTTCCTCAACCGCTTCATGTGAGTTTGG AGGCGTTTCTCTCTGGGACGGAGGAAGGTGGCCTGAGGGTGGCGACGCGG ATGTTGACCGCAACCGAGTGTTTTTGCTGTCTGGGTTTGTTTTGTCAGTC CACATGGAGGATATGGTTGATTTTGCTATCTTCGAAGACCCCTCCTGGCA ACATTTAAAAAATATTAATTAAAAACGTGCTGAGTAACGGTACGCGATTC CTGGTATACTACAAGAACGCGAGGGGCACACACGTTACCCACGAGGGACA GTTGGTGCAACTAGATGTCGAGTGGGGAAAAACGTGACGATATTCTACAC TTCATGTATCCTAAGACGTGATTGCACCGTTGTGTTGTTGAGCTGATAAC GTGTAACGCATCGGGACCCTCCTCCCGTCTCCCTCCTTATCCAGGTGAGC TGATGTTGGTGTTTCTCTCATGAGCCGTTGCTATCTTTAAAATATATATA TATTGTTTCCCCCAGGGATACCATCGGTATGACGCTCGAGATGGAACCGC TTGAGATCGGCGTGAGAAAGCTGGCGGCGACGGGTTGGAAACCAGGGAGC GCGTTCGATCCAGAAGCCGACGCAGAGCTGATAGAGGAGGATCGCATCGA GGCCATCAAGCGGTCGGAGAGAAACTCGAAGTCCGGGTTTTTATCG
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Coding sequence (CDS) from alignment at H-elongata_contig105390:1078..2023+

>mRNA_H-elongata_contig105390.446.1 ID=mRNA_H-elongata_contig105390.446.1|Name=mRNA_H-elongata_contig105390.446.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig105390:1078..2023+ (Himanthalia elongata Himel1 dioecious)
AGGGCCTACGGATGCGGCTACTGCGCCGCGCACTGCGCCGCGCTCGGGAC
GGTTTGGCGCGGGGATAGCATCTTTCTCGCGAAGAACGTGGCCGCGATGG
CCCCCTTCCCCGATCCGGCGATGTTCACACCCCAGGAGCTCGCGGCAATC
AACATCTCCAAGAGGGTAGGGCCGGTGCCGAGCGTGGTGACCTCGGAGGA
CATCAAAGACATGGCGTCAGTATTTTCCGAGAAAGAGCAGGAGGCCGTGG
TAAACTGCTGCGCGGTCATGGGTTTCCTCAACCGCTTCATAGGGCCTACG
GATGCGGCTACTGCGCCGCGCACTGCGCCGCGCTCGGGACGGTTTGGCGC
GGGGATAGCATCTTTCTCGCGAAGAACGTGGCCGCGATGGCCCCCTTCCC
CGATCCGGCGATGTTCACACCCCAGGAGCTCGCGGCAATCAACATCTCCA
AGAGGGTAGGGCCGGTGCCGAGCGTGGTGACCTCGGAGGACATCAAAGAC
ATGGCGTCAGTATTTTCCGAGAAAGAGCAGGAGGCCGTGGTAAACTGCTG
CGCGGTCATGGGTTTCCTCAACCGCTTCATGGATACCATCGGTATGACGC
TCGAGATGGAACCGCTTGAGATCGGCGTGAGAAAGCTGGCGGCGACGGGT
TGGAAACCAGGGAGCGCGTTCGATCCAGAAGCCGACGCAGAGCTGATAGA
GGAGGATCGCATCGAGGCCATCAAGCGGTCGGAGAGAAACTCGAAGTCCG
GGTTTTTATCGGGATACCATCGGTATGACGCTCGAGATGGAACCGCTTGA
GATCGGCGTGAGAAAGCTGGCGGCGACGGGTTGGAAACCAGGGAGCGCGT
TCGATCCAGAAGCCGACGCAGAGCTGATAGAGGAGGATCGCATCGAGGCC
ATCAAGCGGTCGGAGAGAAACTCGAAGTCCGGGTTTTTATCG
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