mRNA_H-elongata_contig172438.4459.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172438.4459.1
Unique NamemRNA_H-elongata_contig172438.4459.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 176 bits (447), Expect = 1.340e-47
Identity = 114/350 (32.57%), Postives = 192/350 (54.86%), Query Frame = 1
Query:    1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFP--GAVGQLNKAIYGLQGKA---------------------DPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRK--IPATSGVPTLSKTDEPRN-PEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 972
            +P++  +AM+S + D W +A E+EM  M  N V+  V   K    +G K ++K+K+G DG VE Y+ RLVA+G+   EG+ Y E +SP     SIR+L A  A  D E+   D +  FL  ++ EE+Y    E +        V +L ++IYGL+  +                     +PCV++K+  G + + +V++VDDIL    D  ++      L ++  +KD+G+  Y +G  I R+R  R L + Q +Y+++++++++ EK ++  +P   GV +LS+ + P+   E+E M + PY  AVGA+M+T T TRPD+A A+   +R+ +   G  H K    I++Y
Sbjct:   92 DPKSYEEAMQSLDHDKWIRAMESEMESMKINKVWTLVEASKGIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKI-SGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRY-QANPGEEHWKVVKTILKY 438          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A438JH99_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JH99_VITVI)

HSP 1 Score: 177 bits (450), Expect = 3.390e-46
Identity = 114/350 (32.57%), Postives = 191/350 (54.57%), Query Frame = 1
Query:    1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFP--GAVGQLNKAIYGLQGKA---------------------DPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRK--IPATSGVPTLSKTDEPRNPE-KEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 972
            +P+N  +AM+  + + W++A E+E+  M  N V+  V   KD   +G K ++K+K+G DG VE Y+ RLVA+G+   EG+ Y E +SP     SIR+L A  A  D E+   D +  FL  ++ E++Y    E Y        V +L ++IYGL+  +                     +PCV+++   G   + +V++VDDIL    D   +      L ++  +KD+G+  Y +G  I R+R  R L + Q +Y+++++++++ E  ++  +P  +GV TLS+ D P+ PE +E M + PY  AVGA+M+T T TRPD+A A+   +R+ +   G  H K    I++Y
Sbjct:  703 DPKNYEEAMQILDRNKWQEAMESEIESMKINKVWTLVEASKDIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEDVYMTQPEGYTSMSDHNKVCKLRRSIYGLKQASRSWNIHFNKTIEKFDFVKCEEEPCVYKRF-SGSTIIFLVLYVDDILLIGNDIPAMQGTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRY-QANPGEEHWKVVKTILKY 1049          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: H3GAU1_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GAU1_PHYRM)

HSP 1 Score: 167 bits (423), Expect = 2.000e-45
Identity = 106/327 (32.42%), Postives = 174/327 (53.21%), Query Frame = 1
Query:   25 MESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKY--QKFPGAVGQLNKAIYGLQ---------------------GKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKI--PATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKN 930
            M S   D W  A ++EM+ + ++  ++ V  P+DK  +G K + + K   +GNV K++ RLVA+G+    G+ +T+ ++P     SI    AT A +D E  N D +  FL  D+ EELY +  + +  Q  P     L +A+YG +                       ADPCV+ +    E  +VV+ +VD ++  +K K  I+     L +K  +K++G+++Y +G  I RNR+ + + ++Q  Y++ + EKF  +K + +  PA      +  T+     E+  + K+PYRE VGALM+ AT TRPDIA AV  VA+FC++ N
Sbjct:    1 MRSKYKDQWLDAMKSEMKSLKDHNTWELVKMPRDKKAIGCKWVFRIKRDPNGNVVKFKARLVAKGYTQRPGIDFTDTFAPVARKESINASLATAAEEDMEAENVDVDTAFLYGDVEEELYMDQPDGFEDQSNPAMKCLLKQALYGTKQAARQWNNKLNKYLEDQGFRRSDADPCVYVRRSTDEYSIVVI-YVDALMLFSKTKEHIESIKVTLKKKFSIKELGELKYCLGIEIDRNREDKTILMNQRAYIKRLAEKFGVDKCKAVHTPADCNSKLVKMTE-----EEAFVAKYPYRELVGALMYLATCTRPDIAQAVGEVAKFCKRYN 321          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 171 bits (433), Expect = 5.890e-45
Identity = 117/335 (34.93%), Postives = 188/335 (56.12%), Query Frame = 1
Query:    1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKY-QKFPGAVGQLNKAIYGLQGKADPCVFRKVV------DGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPT---LSKTDEPRNPEK-EEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 972
            EP   RQA+ SP  + W++A   EM   + N  +  V  P  +  +G+K +++ K   DG++E+++ RLVA+GF    G  Y+E ++ T    ++R + A  A +D  LR+ D    F+ +DI+ E+Y    E + Q  P  V +L+K++YGL  K  P ++ + +      +   +V+V V VDDI   +K +  +D F A+L +  KL+D+G   Y +G  ITRNR  RKL + Q  Y+ + +E+F     +  PAT+ +     LSK+  P+ P++ EEM + PY  AVG+L++ ATMTRPDIA     +ARF     G  H KA  ++++Y
Sbjct:  103 EPVTYRQAITSPNAEQWQEAMIEEMTAHLSNGTWNLVELPPGQKAIGSKWVYRIKHKADGSIERFKARLVAKGFSQRLGFDYSETFASTMRQNTLRTVLALAAVEDLHLRSIDISHAFINSDIDTEIYMTQPEGFRQGGPRIVCRLDKSLYGL--KQAPRLWDEKLGIYIYQNDNVKVIVPVFVDDITLASKSEDMLDEFVAKLSKHFKLRDLGATSYLLGVEITRNRPERKLYLSQRQYIINKLEEFGMTDCK--PATTPMTPNLILSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARF-NSNPGMDHWKAVKHVLRY 432          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: H3G9E3_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9E3_PHYRM)

HSP 1 Score: 169 bits (427), Expect = 7.780e-45
Identity = 107/327 (32.72%), Postives = 177/327 (54.13%), Query Frame = 1
Query:   67 TEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKY--QKFPGAVGQLNKAIYGLQ---------------------GKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKI--PATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 972
            +EM+ + ++  ++ V  P+DK  +G K + + K   +GNV K++ RLVA+G+    G+ +T+ ++P     SI    AT A +D E  N D +  FL  D+ EELY +  + +  Q  P     L +A+YG +                       ADPCV+ +    E  +VV+ +VDD++  +K K  I+     L ++  +K++G+++Y +G  I RNR+ + + ++Q  Y++ + EKF  +K + +  PA      +  T+     E+  + K+PYRE VGALM+ AT TRPDIA AV  VA+FCE+ N  +H  AA  I++Y
Sbjct:    3 SEMKSLEDHNTWELVKMPRDKKAIGFKWVFRIKRDPNGNVVKFKARLVAKGYTQRPGIDFTDTFAPVAREESINASLATAAEEDMEAENVDVDTAFLYGDVEEELYMDQPDGFEDQSNPAMKCLLKQALYGTKQAARQWNSKLNKHLEDQGFRRSDADPCVYVRRSTDEYSIVVI-YVDDLMLFSKTKEHIESIKVALKKEFSIKELGELKYCLGIEIDRNREDKTILMNQRAYIKRLAEKFGVDKCKAVHTPADCNSKLVKMTE-----EEAFVAKYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYN-KSHWVAAKRILKY 322          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A1Y1IQX0_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQX0_KLENI)

HSP 1 Score: 172 bits (435), Expect = 3.440e-44
Identity = 116/350 (33.14%), Postives = 194/350 (55.43%), Query Frame = 1
Query:    1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKF-PGAVGQLNKAIYGLQ---------------------GKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAE--KVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPA--HKKAAMNIMQY 972
            EP++ ++A+   + + WR++ + EMR ++EN  ++ V +P+    V  K ++K K    GN+E+++ RLVA+GF   +GV + E Y+P     ++R L    AA+D EL   D +  FL  ++ EE+Y +  + Y++  P  V +L K IYGL+                      ++D  +F  VVDGE  V VVV VDDIL  A  +  + +  A L +K  ++D+G   Y++G  +TR+R+AR +K+ Q    + ++ +++ E  K R  P +SG   L K  +P      +  K+PY E VG+L++ +  TRPDIA AV A+AR+    +GP   H +AA+ +++Y
Sbjct:  835 EPQSYQEAVGGEQSEIWRQSMDDEMRSLLENGTWELVPKPEGVKPVPMKWVYKIKQDAAGNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPKTVCRLKKTIYGLRQAPRAWHQRLKAELGEIEFQASESDAALFTGVVDGE-RVWVVVWVDDILIAAAGEKRLAKVKAHLSRKFDVRDLGPAEYFLGMELTRDRRARTVKLTQKKLTKELLGRYELEAAKARSTPLSSGE-KLQKEGDPL-----DTGKYPYSELVGSLLYLSVCTRPDIAQAVGALARYM---SGPTQEHWRAALGVVRY 1174          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A1Y1IVX6_KLENI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVX6_KLENI)

HSP 1 Score: 171 bits (433), Expect = 5.880e-44
Identity = 115/350 (32.86%), Postives = 193/350 (55.14%), Query Frame = 1
Query:    1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKF-PGAVGQLNKAIYGLQ---------------------GKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKF--DAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPA--HKKAAMNIMQY 972
            EP++ ++A+   + + WR++ + EMR ++EN  ++ V +P+    V  K ++K K    GN+E+++ RLVA+GF   +GV + E Y+P     ++R L    AA+D EL   D +  FL  ++ EE+Y +  + Y++  P  V +L K IYGL+                      ++D  +F  V+DGE  V VVV VDDIL  AK +  + +  A L +K  ++D+G   Y++G  +TR+R+AR +K+ Q    + ++ ++  +A K R  P +SG   L +  +P      +  K+PY E VG+L++ +  TRPDIA AV A+AR+     GP   H +AA+ + +Y
Sbjct:  560 EPQSYQEAVGGEQSEIWRQSMDDEMRSLLENGTWELVPKPEGVKPVPMKWVYKIKRDAAGNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPETVCRLKKTIYGLRQAPRAWHQKLKTELGEIEFRASESDAALFTGVIDGE-RVWVVVWVDDILIAAKGEQRLAKVKAHLSEKFDVRDLGPAEYFLGMELTRDRRARTIKLTQKKLTKELLGRYGLEAAKARSTPLSSGE-KLQREGDPL-----DTGKYPYSELVGSLLYLSVCTRPDIAQAVGALARYMA---GPTEEHWRAALGVARY 899          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5JJC4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC4_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 8.350e-44
Identity = 114/344 (33.14%), Postives = 177/344 (51.45%), Query Frame = 1
Query:    1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYK-QVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGLQGKA---------------------DPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIM 966
            EP   R+A +S     W KA      G++    +   V  P    V+  + ++K    + G  EK + RLVA+GF    GV Y E +SPT + ASIR+L A T   + EL +FD EQ F +++++ E++ ++    +   G V +L+K++YGL+  +                     DPCV R ++  E   +V +H DDIL HA  +         LG     K++G+V++++GC  +R+R+A  ++I Q  YV S++E+F+  +   I A+      S        E EE    P+RE VG+LMW A  TRPDI++AVRAVAR   +    +H KAA  I+
Sbjct:   14 EPGRYREARQSMHAVIWDKAMSEAFEGLLRAGTFALAVKAPISCNVIDARWVYKWISDETGKTEKAKARLVAKGFEQKHGVDYLETFSPTANAASIRLLVALTCKYNLELLHFDIEQAFFQSELDHEVFMKLPPDCESMSGKVVRLDKSLYGLRQASRTFHRRQVWDLKAIGFEQPLFDPCVLRFIMGDEVMGMVAIHADDIL-HAGTERLAKMVVEALGDSLSTKNLGEVKFFLGCAFSRDREAGTIEISQESYVRSVLERFNIYRTSSISASPAKAYRSVM------EDEEAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPK-TSHWKAAQKIL 349          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 169 bits (429), Expect = 2.200e-43
Identity = 113/351 (32.19%), Postives = 187/351 (53.28%), Query Frame = 1
Query:    1 EPRNRRQAMESPEWDDWRKAKETEMRGMVENCVYKQVARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGA--VGQLNKAIYGLQGKA---------------------DPCVFRKVVDGEA-EVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKI--PATSGVPTLSKTDEPRNP-EKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPAHKKAAMNIMQY 972
            EPR+  +AM+SP+W  W+KA E EMR + ++  Y  V  P++  VVG+K + + K   +G +E Y+ RLVAQGF  + G+ + + ++P    ASIR++ A  A  D ++   D +  +L AD+ EE++ +      K      V  L  AIYGL+                        D CVF    D ++  +++ + VDD      +   +  F  E+ ++ ++ D+G++ + +G  + R+R AR L + Q  Y++ ++ +F+ E  + +  P   G   LS    P  P E E+MR  PYREA+G+LM+ A  TRPDIA AV A+++F +   G AH +AA  +++Y
Sbjct:  959 EPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVL-WFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEPGA-ILSIRQCPSTPREFEDMRNVPYREAIGSLMYAALGTRPDIAFAVTALSQFMQNP-GRAHWEAAKRVLRY 1306          
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 2.880e-43
Identity = 110/334 (32.93%), Postives = 176/334 (52.69%), Query Frame = 1
Query:   43 DDWRKAKETEMRGMVENCVYKQV-ARPKDKLVVGTKILHKQKVGQDGNVEKYQCRLVAQGFW*VEGVHYTEKYSPTPSTASIRMLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLNKAIYGL---------------------QGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAELGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKVRKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKKNGPA--HKKAAMNIMQY 972
            + W +A   E  G +    +  V   P+ +  V +K     K  ++G ++ ++ RLVA+GF  +  V Y    SP PS+ASI+++ A    K   L ++D +Q +  A ++EE++ ++          + +  +AIYGL                     Q KADPCVFRK+VD    +++V++VDDIL    D+   +   A L +K   K++G+ +++ GC I R+ +A  L+I Q  Y++SMVE+FD +   +IPAT G     K       E EE  ++P REA+G++MW +T +RPD++ AVRAVAR     + PA  H  A   I+ Y
Sbjct:  750 EGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKR------EDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHA---HAPAKRHWDAIQKILGY 1073          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172438.4459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K3MAN7_TRIPR1.340e-4732.57Retrotransposon protein putative Ty1-copia subclas... [more]
A0A438JH99_VITVI3.390e-4632.57Retrovirus-related Pol polyprotein from transposon... [more]
H3GAU1_PHYRM2.000e-4532.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
E2LZP6_MONPE5.890e-4534.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3G9E3_PHYRM7.780e-4532.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1IQX0_KLENI3.440e-4433.14Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A1Y1IVX6_KLENI5.880e-4432.86Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JJC4_9PHAE8.350e-4433.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GQU1_9APHY2.200e-4332.19Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A6H5KSG8_9PHAE2.880e-4332.93Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172438contigH-elongata_contig172438:299..1333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.0
Seed ortholog evalue2.8e-27
Seed eggNOG ortholog164328.Phyra71619
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3QHW0@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size972
Cds size684
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172438.4459.1prot_H-elongata_contig172438.4459.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172438 587..1333 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930004.124845-UTR-H-elongata_contig172438:298..5861622930004.124845-UTR-H-elongata_contig172438:298..586Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172438 299..586 +
1691679242.060015-UTR-H-elongata_contig172438:298..5861691679242.060015-UTR-H-elongata_contig172438:298..586Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172438 299..586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930004.1390443-CDS-H-elongata_contig172438:586..7541622930004.1390443-CDS-H-elongata_contig172438:586..754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172438 587..754 +
1691679242.0706434-CDS-H-elongata_contig172438:586..7541691679242.0706434-CDS-H-elongata_contig172438:586..754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172438 587..754 +
1622930004.1557372-CDS-H-elongata_contig172438:817..13331622930004.1557372-CDS-H-elongata_contig172438:817..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172438 818..1333 +
1691679242.0781307-CDS-H-elongata_contig172438:817..13331691679242.0781307-CDS-H-elongata_contig172438:817..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172438 818..1333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172438.4459.1

>prot_H-elongata_contig172438.4459.1 ID=prot_H-elongata_contig172438.4459.1|Name=mRNA_H-elongata_contig172438.4459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=228bp
MLSATTAAKDGELRNFDAEQTFLKADINEELYREISEKYQKFPGAVGQLN
KAIYGLQGKADPCVFRKVVDGEAEVVVVVHVDDILAHAKDKVTIDRFAAE
LGQKSKLKDMGDVRYYMGCHITRNRKARKLKIDQHLYVESMVEKFDAEKV
RKIPATSGVPTLSKTDEPRNPEKEEMRKFPYREAVGALMWTATMTRPDIA
SAVRAVARFCEKKNGPAHKKAAMNIMQY
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mRNA from alignment at H-elongata_contig172438:299..1333+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172438.4459.1 ID=mRNA_H-elongata_contig172438.4459.1|Name=mRNA_H-elongata_contig172438.4459.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1035bp|location=Sequence derived from alignment at H-elongata_contig172438:299..1333+ (Himanthalia elongata Himel1 dioecious)
GAACCTAGGAATCGGCGGCAGGCGATGGAATCACCGGAATGGGACGATTG GCGGAAAGCAAAGGAAACAGAGATGCGTGGCATGGTCGAGAACTGCGTTT ATAAGCAGGTGGCTCGACCGAAGGATAAGCTCGTGGTTGGCACAAAAATA CTCCACAAGCAAAAGGTCGGACAGGACGGTAATGTCGAGAAATACCAGTG CCGACTTGTAGCTCAAGGGTTCTGGTAGGTGGAAGGTGTACACTATACGG AAAAATACTCGCCCACGCCATCAACCGCGTCAATCCGGATGCTTTCGGCC ACAACAGCGGCCAAGGACGGTGAGCTGCGCAATTTCGATGCGGAGCAGAC ATTCTTGAAAGCAGACATCAATGAGGAGTTATATAGAGAGATCTCCGAGA AGTACCAGAAGTTTCCGGGGGCAGTGGGACAGCTGAACAAGGCCATTTAC GGACTCGTACAGGCGGGGTGGTGCTGGAACAACAAGTTCTGCGGCGATAT TGCGGCGATTGGATTCGAGCAGGGAAAGGCGGATCCATGCGTGTTTCGTA AGGTCGTTGACGGCGAGGCGGAAGTGGTGGTGGTCGTACACGTGGACGAT ATTCTTGCTCACGCCAAGGATAAAGTGACTATAGATAGATTCGCGGCTGA GCTTGGACAAAAGTCCAAATTGAAGGACATGGGTGACGTCAGGTACTATA TGGGCTGCCACATCACTAGGAACCGCAAGGCGCGCAAGCTGAAGATCGAC CAACACTTGTACGTGGAGTCGATGGTGGAAAAGTTTGATGCCGAGAAGGT AAGAAAGATACCGGCTACATCGGGGGTGCCAACACTCTCAAAGACAGACG AGCCGCGGAACCCAGAGAAGGAGGAAATGAGGAAGTTCCCATACCGGGAA GCAGTGGGGGCGCTTATGTGGACGGCGACGATGACACGGCCGGACATTGC GAGCGCAGTACGTGCTGTGGCCAGGTTCTGCGAAAAAAAAAATGGGCCGG CGCATAAGAAGGCAGCGATGAATATCATGCAATAT
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Coding sequence (CDS) from alignment at H-elongata_contig172438:299..1333+

>mRNA_H-elongata_contig172438.4459.1 ID=mRNA_H-elongata_contig172438.4459.1|Name=mRNA_H-elongata_contig172438.4459.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1368bp|location=Sequence derived from alignment at H-elongata_contig172438:299..1333+ (Himanthalia elongata Himel1 dioecious)
ATGCTTTCGGCCACAACAGCGGCCAAGGACGGTGAGCTGCGCAATTTCGA
TGCGGAGCAGACATTCTTGAAAGCAGACATCAATGAGGAGTTATATAGAG
AGATCTCCGAGAAGTACCAGAAGTTTCCGGGGGCAGTGGGACAGCTGAAC
AAGGCCATTTACGGACTCATGCTTTCGGCCACAACAGCGGCCAAGGACGG
TGAGCTGCGCAATTTCGATGCGGAGCAGACATTCTTGAAAGCAGACATCA
ATGAGGAGTTATATAGAGAGATCTCCGAGAAGTACCAGAAGTTTCCGGGG
GCAGTGGGACAGCTGAACAAGGCCATTTACGGACTCCAGGGAAAGGCGGA
TCCATGCGTGTTTCGTAAGGTCGTTGACGGCGAGGCGGAAGTGGTGGTGG
TCGTACACGTGGACGATATTCTTGCTCACGCCAAGGATAAAGTGACTATA
GATAGATTCGCGGCTGAGCTTGGACAAAAGTCCAAATTGAAGGACATGGG
TGACGTCAGGTACTATATGGGCTGCCACATCACTAGGAACCGCAAGGCGC
GCAAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGATGGTGGAAAAG
TTTGATGCCGAGAAGGTAAGAAAGATACCGGCTACATCGGGGGTGCCAAC
ACTCTCAAAGACAGACGAGCCGCGGAACCCAGAGAAGGAGGAAATGAGGA
AGTTCCCATACCGGGAAGCAGTGGGGGCGCTTATGTGGACGGCGACGATG
ACACGGCCGGACATTGCGAGCGCAGTACGTGCTGTGGCCAGGTTCTGCGA
AAAAAAAAATGGGCCGGCGCATAAGAAGGCAGCGATGAATATCATGCAAT
ATCAGGGAAAGGCGGATCCATGCGTGTTTCGTAAGGTCGTTGACGGCGAG
GCGGAAGTGGTGGTGGTCGTACACGTGGACGATATTCTTGCTCACGCCAA
GGATAAAGTGACTATAGATAGATTCGCGGCTGAGCTTGGACAAAAGTCCA
AATTGAAGGACATGGGTGACGTCAGGTACTATATGGGCTGCCACATCACT
AGGAACCGCAAGGCGCGCAAGCTGAAGATCGACCAACACTTGTACGTGGA
GTCGATGGTGGAAAAGTTTGATGCCGAGAAGGTAAGAAAGATACCGGCTA
CATCGGGGGTGCCAACACTCTCAAAGACAGACGAGCCGCGGAACCCAGAG
AAGGAGGAAATGAGGAAGTTCCCATACCGGGAAGCAGTGGGGGCGCTTAT
GTGGACGGCGACGATGACACGGCCGGACATTGCGAGCGCAGTACGTGCTG
TGGCCAGGTTCTGCGAAAAAAAAAATGGGCCGGCGCATAAGAAGGCAGCG
ATGAATATCATGCAATAT
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