mRNA_H-elongata_contig172373.4458.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172373.4458.1
Unique NamemRNA_H-elongata_contig172373.4458.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig172373.4458.1 vs. uniprot
Match: A0A6H5JVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM9_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.880e-11
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 WKEWFQELLNAKSPTLDASILDGIEQLPEHAPLAAEPTLEEVKEAVGKLGNGKAIGVDNVCGELLKL 201
            W  WF +LLN KSPT+D    D +++ P   PL   P+L EV+EAV ++ N KA+G+D++  EL+KL
Sbjct:   78 WARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGLDDLPAELIKL 144
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BLAST of mRNA_H-elongata_contig172373.4458.1 vs. uniprot
Match: A0A6P8H386_ACTTE (uncharacterized protein LOC116287377 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8H386_ACTTE)

HSP 1 Score: 51.6 bits (122), Expect = 1.100e-6
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:    1 WKEWFQELLNAKSPT--LDASILDGIEQLPEHAPLAA-EPTLEEVKEAVGKLGNGKAIGVDNVCGELLK 198
            W E F+E+ N + P   + +   +G E       +A  EPT+ EVKEAV KL NGKA+G+DN+  ELLK
Sbjct:   40 WMEHFKEVPNREQPANPITSEEENGFEFSAVMEEIAVNEPTIGEVKEAVKKLKNGKALGIDNITAELLK 108
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BLAST of mRNA_H-elongata_contig172373.4458.1 vs. uniprot
Match: UPI001F135E6E (uncharacterized protein LOC124542503 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F135E6E)

HSP 1 Score: 52.0 bits (123), Expect = 4.570e-6
Identity = 30/68 (44.12%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:    1 WKEWFQELLNAKSPTLDASILDGIEQLPEHAPLAAEPTLEEVKEAVGKLGNGKAIGVDNVCGELLKLG 204
            W E F  LLN      D   L  + +LP+   L   P+L+EV EA+    N KA+GVDN+ GELLK G
Sbjct:  473 WSEHFNNLLNVDR-LADFEYLRTLPELPKREDLVQPPSLQEVIEAIKAQKNKKAVGVDNIPGELLKYG 539
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172373.4458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JVM9_9PHAE3.880e-1146.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P8H386_ACTTE1.100e-644.93uncharacterized protein LOC116287377 n=1 Tax=Actin... [more]
UPI001F135E6E4.570e-644.12uncharacterized protein LOC124542503 n=1 Tax=Vanes... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172373contigH-elongata_contig172373:23..226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930004.0737011-CDS-H-elongata_contig172373:22..2261622930004.0737011-CDS-H-elongata_contig172373:22..226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172373 23..226 -
1691679242.046174-CDS-H-elongata_contig172373:22..2261691679242.046174-CDS-H-elongata_contig172373:22..226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172373 23..226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172373.4458.1prot_H-elongata_contig172373.4458.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172373 23..226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172373.4458.1

>prot_H-elongata_contig172373.4458.1 ID=prot_H-elongata_contig172373.4458.1|Name=mRNA_H-elongata_contig172373.4458.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
WKEWFQELLNAKSPTLDASILDGIEQLPEHAPLAAEPTLEEVKEAVGKLG
NGKAIGVDNVCGELLKLG
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mRNA from alignment at H-elongata_contig172373:23..226-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172373.4458.1 ID=mRNA_H-elongata_contig172373.4458.1|Name=mRNA_H-elongata_contig172373.4458.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig172373:23..226- (Himanthalia elongata Himel1 dioecious)
TGGAAAGAGTGGTTTCAGGAGCTCCTGAACGCGAAATCGCCGACTCTGGA
CGCCTCTATCCTCGACGGCATCGAGCAGTTGCCCGAACACGCCCCGCTTG
CGGCCGAGCCCACGTTGGAGGAAGTGAAGGAGGCAGTGGGCAAGCTGGGG
AACGGCAAGGCTATCGGCGTCGACAATGTCTGCGGTGAACTGCTAAAGCT
CGGT
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Coding sequence (CDS) from alignment at H-elongata_contig172373:23..226-

>mRNA_H-elongata_contig172373.4458.1 ID=mRNA_H-elongata_contig172373.4458.1|Name=mRNA_H-elongata_contig172373.4458.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig172373:23..226- (Himanthalia elongata Himel1 dioecious)
TGGAAAGAGTGGTTTCAGGAGCTCCTGAACGCGAAATCGCCGACTCTGGA
CGCCTCTATCCTCGACGGCATCGAGCAGTTGCCCGAACACGCCCCGCTTG
CGGCCGAGCCCACGTTGGAGGAAGTGAAGGAGGCAGTGGGCAAGCTGGGG
AACGGCAAGGCTATCGGCGTCGACAATGTCTGCGGTGAACTGCTAAAGCT
CGGTTGGAAAGAGTGGTTTCAGGAGCTCCTGAACGCGAAATCGCCGACTC
TGGACGCCTCTATCCTCGACGGCATCGAGCAGTTGCCCGAACACGCCCCG
CTTGCGGCCGAGCCCACGTTGGAGGAAGTGAAGGAGGCAGTGGGCAAGCT
GGGGAACGGCAAGGCTATCGGCGTCGACAATGTCTGCGGTGAACTGCTAA
AGCTCGGT
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