mRNA_H-elongata_contig17218.4449.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17218.4449.1
Unique NamemRNA_H-elongata_contig17218.4449.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig17218.4449.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 5.170e-28
Identity = 64/167 (38.32%), Postives = 95/167 (56.89%), Query Frame = 1 
Query:    1 EKQLRVGDQNELFQNIKSVQLEETKKVKSQCIRDEEGILLRDKGRICERWVLFFRLLLNAKSDILDHDISTRLPQHPVASALGMEHTEESIDTAMKAMETAKAVGPESLPAVLLKLELQQDRTILRELHGHTILVWREGKVPQQWKHAFITVIGLPGDSALTVRLRG 501
            EK+ R GDQ   ++++K + +E  +   SQ I+DE+G +LRD   I +RW  +F  LLN KS  +D   + ++ + P    L    +   ++ A++ M   KAVGP+ LPA L+KL L  D+ +LRE H   + VW+ G VPQQWK A I V+   GD+      RG
Sbjct:   51 EKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLREVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMGCGNYRG 217
[Close]
BLAST of mRNA_H-elongata_contig17218.4449.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 9.620e-27
Identity = 66/167 (39.52%), Postives = 94/167 (56.29%), Query Frame = 1 
Query:    1 EKQLRVGDQNELFQNIKSVQLEETKKVKSQCIRDEEGILLRDKGRICERWVLFFRLLLNAKSDILDHDISTRLPQHPVASALGMEHTEESIDTAMKAMETAKAVGPESLPAVLLKLELQQDRTILRELHGHTILVWREGKVPQQWKHAFITVIGLPGDSALTVRLRG 501
            EK+ R GDQ   ++++K + +E  + + SQ I+DE+G +LRD     +RW  +F  LLN KS  +D   + R+ Q P    L    +   ++ A++ M   KAVGP+ LPA L+KL L  DR  LRE H   + VW+ G VPQQWK A I V+   GD+      RG
Sbjct:  262 EKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRG 428
[Close]
BLAST of mRNA_H-elongata_contig17218.4449.1 vs. uniprot
Match: A0A6H5JUB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB0_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 9.720e-27
Identity = 66/167 (39.52%), Postives = 94/167 (56.29%), Query Frame = 1 
Query:    1 EKQLRVGDQNELFQNIKSVQLEETKKVKSQCIRDEEGILLRDKGRICERWVLFFRLLLNAKSDILDHDISTRLPQHPVASALGMEHTEESIDTAMKAMETAKAVGPESLPAVLLKLELQQDRTILRELHGHTILVWREGKVPQQWKHAFITVIGLPGDSALTVRLRG 501
            EK+ R GDQ   ++++K + +E  + + SQ I+DE+G +LRD     +RW  +F  LLN KS  +D   + R+ Q P    L    +   ++ A++ M   KAVGP+ LPA L+KL L  DR  LRE H   + VW+ G VPQQWK A I V+   GD+      RG
Sbjct:   47 EKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRG 213
[Close]
BLAST of mRNA_H-elongata_contig17218.4449.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 9.760e-27
Identity = 66/167 (39.52%), Postives = 94/167 (56.29%), Query Frame = 1 
Query:    1 EKQLRVGDQNELFQNIKSVQLEETKKVKSQCIRDEEGILLRDKGRICERWVLFFRLLLNAKSDILDHDISTRLPQHPVASALGMEHTEESIDTAMKAMETAKAVGPESLPAVLLKLELQQDRTILRELHGHTILVWREGKVPQQWKHAFITVIGLPGDSALTVRLRG 501
            EK+ R GDQ   ++++K + +E  + + SQ I+DE+G +LRD     +RW  +F  LLN KS  +D   + R+ Q P    L    +   ++ A++ M   KAVGP+ LPA L+KL L  DR  LRE H   + VW+ G VPQQWK A I V+   GD+      RG
Sbjct:  400 EKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRG 566
[Close]
BLAST of mRNA_H-elongata_contig17218.4449.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 9.850e-27
Identity = 66/167 (39.52%), Postives = 94/167 (56.29%), Query Frame = 1 
Query:    1 EKQLRVGDQNELFQNIKSVQLEETKKVKSQCIRDEEGILLRDKGRICERWVLFFRLLLNAKSDILDHDISTRLPQHPVASALGMEHTEESIDTAMKAMETAKAVGPESLPAVLLKLELQQDRTILRELHGHTILVWREGKVPQQWKHAFITVIGLPGDSALTVRLRG 501
            EK+ R GDQ   ++++K + +E  + + SQ I+DE+G +LRD     +RW  +F  LLN KS  +D   + R+ Q P    L    +   ++ A++ M   KAVGP+ LPA L+KL L  DR  LRE H   + VW+ G VPQQWK A I V+   GD+      RG
Sbjct:  512 EKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRG 678
[Close]
BLAST of mRNA_H-elongata_contig17218.4449.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 9.940e-27
Identity = 66/167 (39.52%), Postives = 94/167 (56.29%), Query Frame = 1 
Query:    1 EKQLRVGDQNELFQNIKSVQLEETKKVKSQCIRDEEGILLRDKGRICERWVLFFRLLLNAKSDILDHDISTRLPQHPVASALGMEHTEESIDTAMKAMETAKAVGPESLPAVLLKLELQQDRTILRELHGHTILVWREGKVPQQWKHAFITVIGLPGDSALTVRLRG 501
            EK+ R GDQ   ++++K + +E  + + SQ I+DE+G +LRD     +RW  +F  LLN KS  +D   + R+ Q P    L    +   ++ A++ M   KAVGP+ LPA L+KL L  DR  LRE H   + VW+ G VPQQWK A I V+   GD+      RG
Sbjct:  633 EKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGFLREFHAIVVDVWQTGNVPQQWKDATIKVLFKKGDTMECGNYRG 799
[Close]
BLAST of mRNA_H-elongata_contig17218.4449.1 vs. uniprot
Match: A0A6H5JGC2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC2_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.020e-26
Identity = 62/159 (38.99%), Postives = 94/159 (59.12%), Query Frame = 1 
Query:    1 EKQLRVGDQNELFQNIKSVQLEETKKVKSQCIRDEEGILLRDKGRICERWVLFFRLLLNAKSDILDHDISTRLPQHPVASALGMEHTEESIDTAMKAMETAKAVGPESLPAVLLKLELQQDRTILRELHGHTILVWREGKVPQQWKHAFITVIGLPGDS 477
            EK+ R GDQ   ++++K + +E  +   SQ I+DE+G +LRD   I +RW  +F  LLN KS  +D   + ++ + P    L    +   ++ A++ M   KAVGP++LPA L+KL L  D+ +LRE H   + VW+ G VPQQWK A I V+   GD+
Sbjct:  201 EKKRRAGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDNLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDT 359
[Close]
BLAST of mRNA_H-elongata_contig17218.4449.1 vs. uniprot
Match: A0A6H5JY74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY74_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.370e-26
Identity = 65/167 (38.92%), Postives = 94/167 (56.29%), Query Frame = 1 
Query:    1 EKQLRVGDQNELFQNIKSVQLEETKKVKSQCIRDEEGILLRDKGRICERWVLFFRLLLNAKSDILDHDISTRLPQHPVASALGMEHTEESIDTAMKAMETAKAVGPESLPAVLLKLELQQDRTILRELHGHTILVWREGKVPQQWKHAFITVIGLPGDSALTVRLRG 501
            EK+ R GDQ   ++++K + +E  +   SQ I+DE+G +LRD     +RW  +F  LLN KS  +D   + R+ Q P    L    +   ++ A++ M   KAVGP+ LPA L+KL L  DR +LRE H   + VW+ G VPQQWK A I V+   G++      RG
Sbjct:  282 EKKSREGDQAGFYRHLKMIDVEGKRPFTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKLFLDGDRGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGNTMECGNYRG 448
[Close]
BLAST of mRNA_H-elongata_contig17218.4449.1 vs. uniprot
Match: A0A6H5L5I5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I5_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.610e-26
Identity = 62/166 (37.35%), Postives = 94/166 (56.63%), Query Frame = 1 
Query:    4 KQLRVGDQNELFQNIKSVQLEETKKVKSQCIRDEEGILLRDKGRICERWVLFFRLLLNAKSDILDHDISTRLPQHPVASALGMEHTEESIDTAMKAMETAKAVGPESLPAVLLKLELQQDRTILRELHGHTILVWREGKVPQQWKHAFITVIGLPGDSALTVRLRG 501
            K+ R GDQ   ++++K + +E  +   SQ I+DE+G +LRD   I +RW  +F  LLN KS  +D   + ++ + P    L    +   ++ A++ M   KAVGP+ LPA L+KL L  D+ +LRE H   + VW+ G VP+QWK A I V+   GD+      RG
Sbjct:  113 KKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMTNRKAVGPDDLPAELIKLLLDGDQGLLREFHASLVDVWQTGDVPKQWKDATIKVLFKKGDTMECGNYRG 278
[Close]
BLAST of mRNA_H-elongata_contig17218.4449.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.130e-25
Identity = 64/167 (38.32%), Postives = 95/167 (56.89%), Query Frame = 1 
Query:    1 EKQLRVGDQNELFQNIKSVQLEETKKVKSQCIRDEEGILLRDKGRICERWVLFFRLLLNAKSDILDHDISTRLPQHPVASALGMEHTEESIDTAMKAMETAKAVGPESLPAVLLKLELQQDRTILRELHGHTILVWREGKVPQQWKHAFITVIGLPGDSALTVRLRG 501
            EK+ R GDQ   ++++K + +E  +   SQ I+DE+G +LRD   I +RW  +F  LLN KS  +D   + ++ + P    L    +   ++ A++ M   KAVGP+ LPA L+KL L  D+ +LRE H   + VW+ G VPQQWK A I V+   GD+      RG
Sbjct:  550 EKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFLDGDQGLLREFHAIVVDVWQTGDVPQQWKDATIKVLFKKGDTMECGNYRG 716
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17218.4449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L012_9PHAE5.170e-2838.32Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8Z5_9PHAE9.620e-2739.52Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUB0_9PHAE9.720e-2739.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC90_9PHAE9.760e-2739.52Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE9.850e-2739.52Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDI8_9PHAE9.940e-2739.52Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JGC2_9PHAE1.020e-2638.99Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JY74_9PHAE3.370e-2638.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5I5_9PHAE4.610e-2637.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVN7_9PHAE1.130e-2538.32Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17218contigH-elongata_contig17218:2175..2675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.6
Seed ortholog evalue3.2e-09
Seed eggNOG ortholog6500.XP_005096957.1
EggNOG free text desc.protein kinase activity
EggNOG OGs39TZY@33154,3BI15@33208,KOG1075@1,KOG1075@2759
COG Functional cat.J
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930002.6169298-CDS-H-elongata_contig17218:2174..26751622930002.6169298-CDS-H-elongata_contig17218:2174..2675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17218 2175..2675 -
1691679241.5306792-CDS-H-elongata_contig17218:2174..26751691679241.5306792-CDS-H-elongata_contig17218:2174..2675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17218 2175..2675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17218.4449.1prot_H-elongata_contig17218.4449.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17218 2175..2675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17218.4449.1

>prot_H-elongata_contig17218.4449.1 ID=prot_H-elongata_contig17218.4449.1|Name=mRNA_H-elongata_contig17218.4449.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
EKQLRVGDQNELFQNIKSVQLEETKKVKSQCIRDEEGILLRDKGRICERW
VLFFRLLLNAKSDILDHDISTRLPQHPVASALGMEHTEESIDTAMKAMET
AKAVGPESLPAVLLKLELQQDRTILRELHGHTILVWREGKVPQQWKHAFI
TVIGLPGDSALTVRLRG
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mRNA from alignment at H-elongata_contig17218:2175..2675-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17218.4449.1 ID=mRNA_H-elongata_contig17218.4449.1|Name=mRNA_H-elongata_contig17218.4449.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=501bp|location=Sequence derived from alignment at H-elongata_contig17218:2175..2675- (Himanthalia elongata Himel1 dioecious)
GAGAAGCAGCTGCGCGTGGGAGACCAGAACGAATTGTTCCAGAACATCAA
ATCGGTGCAACTGGAGGAAACGAAAAAGGTCAAATCACAGTGCATCCGCG
ACGAGGAAGGAATACTGCTACGCGACAAAGGGCGAATCTGTGAGAGGTGG
GTGCTATTCTTCCGTTTGCTGTTGAACGCGAAATCCGACATACTCGATCA
TGACATCTCGACGAGGCTGCCACAGCATCCAGTCGCGAGTGCCCTCGGGA
TGGAGCACACGGAGGAGTCGATTGACACAGCGATGAAGGCAATGGAAACC
GCAAAAGCAGTGGGGCCGGAAAGCCTTCCCGCGGTTCTGCTGAAACTCGA
ACTTCAACAAGACCGGACCATCCTGCGGGAGCTCCATGGACATACTATCC
TCGTCTGGCGAGAGGGTAAAGTCCCACAGCAGTGGAAACACGCATTCATT
ACCGTAATTGGGTTGCCAGGAGACTCAGCGCTCACTGTGAGGCTGAGGGG
T
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Coding sequence (CDS) from alignment at H-elongata_contig17218:2175..2675-

>mRNA_H-elongata_contig17218.4449.1 ID=mRNA_H-elongata_contig17218.4449.1|Name=mRNA_H-elongata_contig17218.4449.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig17218:2175..2675- (Himanthalia elongata Himel1 dioecious)
GAGAAGCAGCTGCGCGTGGGAGACCAGAACGAATTGTTCCAGAACATCAA
ATCGGTGCAACTGGAGGAAACGAAAAAGGTCAAATCACAGTGCATCCGCG
ACGAGGAAGGAATACTGCTACGCGACAAAGGGCGAATCTGTGAGAGGTGG
GTGCTATTCTTCCGTTTGCTGTTGAACGCGAAATCCGACATACTCGATCA
TGACATCTCGACGAGGCTGCCACAGCATCCAGTCGCGAGTGCCCTCGGGA
TGGAGCACACGGAGGAGTCGATTGACACAGCGATGAAGGCAATGGAAACC
GCAAAAGCAGTGGGGCCGGAAAGCCTTCCCGCGGTTCTGCTGAAACTCGA
ACTTCAACAAGACCGGACCATCCTGCGGGAGCTCCATGGACATACTATCC
TCGTCTGGCGAGAGGGTAAAGTCCCACAGCAGTGGAAACACGCATTCATT
ACCGTAATTGGGTTGCCAGGAGACTCAGCGCTCACTGTGAGGCTGAGGGG
TGAGAAGCAGCTGCGCGTGGGAGACCAGAACGAATTGTTCCAGAACATCA
AATCGGTGCAACTGGAGGAAACGAAAAAGGTCAAATCACAGTGCATCCGC
GACGAGGAAGGAATACTGCTACGCGACAAAGGGCGAATCTGTGAGAGGTG
GGTGCTATTCTTCCGTTTGCTGTTGAACGCGAAATCCGACATACTCGATC
ATGACATCTCGACGAGGCTGCCACAGCATCCAGTCGCGAGTGCCCTCGGG
ATGGAGCACACGGAGGAGTCGATTGACACAGCGATGAAGGCAATGGAAAC
CGCAAAAGCAGTGGGGCCGGAAAGCCTTCCCGCGGTTCTGCTGAAACTCG
AACTTCAACAAGACCGGACCATCCTGCGGGAGCTCCATGGACATACTATC
CTCGTCTGGCGAGAGGGTAAAGTCCCACAGCAGTGGAAACACGCATTCAT
TACCGTAATTGGGTTGCCAGGAGACTCAGCGCTCACTGTGAGGCTGAGGG
GT
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