prot_H-elongata_contig172136.4448.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig172136.4448.1
Unique Nameprot_H-elongata_contig172136.4448.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length339
Homology
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BLAST of mRNA_H-elongata_contig172136.4448.1 vs. uniprot
Match: D7FYV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV4_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 4.140e-13
Identity = 52/102 (50.98%), Postives = 60/102 (58.82%), Query Frame = 0 
Query:  244 SLAVTEGR-------GAGACRPWAGLNDDGSWRSEVERRAAGAAGAVEAERRRLAKIXXXXXXXADSSGGSEVERERSRETQQQQTRRESTSLTRLQKGNVR 338
            + AV EG        GAGA   WAGLNDDGSWR+EV RRAAG AGAVEAERRRLAK+       +D++G                 RR+S S T+LQ GNVR
Sbjct:  843 AAAVAEGERGGEEDAGAGAGHEWAGLNDDGSWRTEVARRAAGEAGAVEAERRRLAKVKADESWRSDAAGEGHGA-----------PRRDSVSFTQLQTGNVR 933
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BLAST of mRNA_H-elongata_contig172136.4448.1 vs. uniprot
Match: A0A6H5KWX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.700e-13
Identity = 52/102 (50.98%), Postives = 60/102 (58.82%), Query Frame = 0 
Query:  244 SLAVTEGR-------GAGACRPWAGLNDDGSWRSEVERRAAGAAGAVEAERRRLAKIXXXXXXXADSSGGSEVERERSRETQQQQTRRESTSLTRLQKGNVR 338
            + AV EG        GAGA   WAGLNDDGSWR+EV RRAAG AGAVEAERRRLAK+       +D++G                 RR+S S T+LQ GNVR
Sbjct:  465 AAAVAEGERGGEEDAGAGAGHVWAGLNDDGSWRTEVARRAAGEAGAVEAERRRLAKVKADESWRSDAAGEGHGA-----------PRRDSVSFTQLQTGNVR 555
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172136.4448.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYV4_ECTSI4.140e-1350.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWX8_9PHAE4.700e-1350.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172136contigH-elongata_contig172136:33..1049 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172136.4448.1mRNA_H-elongata_contig172136.4448.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig172136 33..1049 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig172136.4448.1 ID=prot_H-elongata_contig172136.4448.1|Name=mRNA_H-elongata_contig172136.4448.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=339bp
MSVSKAFESVGSRGRPGHSSDVFRMPLSGEGAASLVRLSSMISMSGMKTG
PPSFDSSVQSLPSDDRSTHVDVAVSFDHRVAAPHNELLDSVVVGRNHGGD
SEGALCPGPSVKGPATSLDPASAGEAPTLGPNLDGWTMQDPRASAAAESR
CSGASTDVGAPVNQSRDCVKTSPYLESKKASPAVAKAKKACDNRDVLGSE
PSVGRYEPARMVNGNGYPLGESRPARHCGDDDGGPPKQNREKYSLAVTEG
RGAGACRPWAGLNDDGSWRSEVERRAAGAAGAVEAERRRLAKINGDGSWR
ADSSGGSEVERERSRETQQQQTRRESTSLTRLQKGNVR*
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