mRNA_H-elongata_contig172135.4447.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172135.4447.1
Unique NamemRNA_H-elongata_contig172135.4447.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172135.4447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172135contigH-elongata_contig172135:8..1003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size491
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930002.4769216-CDS-H-elongata_contig172135:7..851622930002.4769216-CDS-H-elongata_contig172135:7..85Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172135 8..85 +
1691679241.5046952-CDS-H-elongata_contig172135:7..851691679241.5046952-CDS-H-elongata_contig172135:7..85Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172135 8..85 +
1622930002.4922473-CDS-H-elongata_contig172135:590..10011622930002.4922473-CDS-H-elongata_contig172135:590..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172135 591..1001 +
1691679241.5125754-CDS-H-elongata_contig172135:590..10011691679241.5125754-CDS-H-elongata_contig172135:590..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172135 591..1001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172135.4447.1prot_H-elongata_contig172135.4447.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172135 8..1001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172135.4447.1

>prot_H-elongata_contig172135.4447.1 ID=prot_H-elongata_contig172135.4447.1|Name=mRNA_H-elongata_contig172135.4447.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
RRAIQHWGRVHRDEANRRRVIAANRNVNHLRRNMKLRVVVVSAICRQSYT
WHINDTTRALRRWREFVRKATDQERFSLEISRMSSVSPLTPIDPRSIASG
LEASAISNNGRVSERNGKSKGGTENTSSARKLWDLAQVNHLRRKMKLRVV
VVSAICRQSYTWH
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mRNA from alignment at H-elongata_contig172135:8..1003+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172135.4447.1 ID=mRNA_H-elongata_contig172135.4447.1|Name=mRNA_H-elongata_contig172135.4447.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=996bp|location=Sequence derived from alignment at H-elongata_contig172135:8..1003+ (Himanthalia elongata Himel1 dioecious)
AGGCGAGCAATCCAGCACTGGGGGCGCGTTCACCGGGATGAAGCGAACCG
CCGGAGGGTGATCGCGGCGAACCGAAATGTGAGTGGTTTCGACTAATATT
TATGGCCATCACATATAGCAGAGTAAGATTAACCGGATTTGGTTGCCTTC
TGCTCGTTTGCGCCTGAGAATTTGGTCTAGTGAGGCGGGTTCAGCAGTCC
CGTACCGCGTTAGCCTGAATCTGGTGTGTACTCCCGGGATCCTCGTTTTC
CGCGACGGCGTCCATCTCTACCGTCAACCGCCATCGGGCGAATCCCGATT
TTATCAGTCACGCAATTGCGTACCGATGGCGTTTACTATCGAGAGTCCGC
CGGCAATGGGCCAGTATTCCTCAAGATAGCTTGAGTAACGGGTGCAGCTT
ATTGAGGTAGCCCCATGGACCAATTGTTGTACGCCTCTATTTTTCCCACA
TCCACTATGGCTAGAGTGGGCATGACGGTTTGCACTATTCCTATTTTAGC
TCGATATGTTTTTCCTAAAGCTTTATGATTCGTCCTCAAAGCGGGCGTCC
TGTAACTCTTACGATTGTCACGGATTGATGCAGGTGAACCACCTCCGGCG
GAACATGAAGCTACGAGTAGTCGTCGTCAGCGCGATCTGCCGGCAGAGCT
ACACCTGGCACATCAATGACACGACGCGCGCCCTGCGAAGGTGGAGGGAG
TTCGTGCGTAAGGCTACTGACCAAGAGAGATTTAGCCTGGAAATTTCGCG
CATGTCCTCGGTCTCGCCCTTGACGCCGATTGATCCGCGCTCTATCGCGT
CGGGACTGGAGGCTTCAGCGATTTCGAACAACGGGCGCGTCTCGGAGAGG
AACGGAAAATCGAAGGGCGGGACGGAGAACACCTCGTCCGCGAGGAAGTT
GTGGGATTTGGCGCAGGTGAACCACCTCCGGCGGAAGATGAAGCTACGAG
TAGTCGTCGTCAGCGCGATCTGCCGGCAGAGCTACACCTGGCACAT
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Coding sequence (CDS) from alignment at H-elongata_contig172135:8..1003+

>mRNA_H-elongata_contig172135.4447.1 ID=mRNA_H-elongata_contig172135.4447.1|Name=mRNA_H-elongata_contig172135.4447.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig172135:8..1003+ (Himanthalia elongata Himel1 dioecious)
AGGCGAGCAATCCAGCACTGGGGGCGCGTTCACCGGGATGAAGCGAACCG
CCGGAGGGTGATCGCGGCGAACCGAAATAGGCGAGCAATCCAGCACTGGG
GGCGCGTTCACCGGGATGAAGCGAACCGCCGGAGGGTGATCGCGGCGAAC
CGAAATGTGAACCACCTCCGGCGGAACATGAAGCTACGAGTAGTCGTCGT
CAGCGCGATCTGCCGGCAGAGCTACACCTGGCACATCAATGACACGACGC
GCGCCCTGCGAAGGTGGAGGGAGTTCGTGCGTAAGGCTACTGACCAAGAG
AGATTTAGCCTGGAAATTTCGCGCATGTCCTCGGTCTCGCCCTTGACGCC
GATTGATCCGCGCTCTATCGCGTCGGGACTGGAGGCTTCAGCGATTTCGA
ACAACGGGCGCGTCTCGGAGAGGAACGGAAAATCGAAGGGCGGGACGGAG
AACACCTCGTCCGCGAGGAAGTTGTGGGATTTGGCGCAGGTGAACCACCT
CCGGCGGAAGATGAAGCTACGAGTAGTCGTCGTCAGCGCGATCTGCCGGC
AGAGCTACACCTGGCACGTGAACCACCTCCGGCGGAACATGAAGCTACGA
GTAGTCGTCGTCAGCGCGATCTGCCGGCAGAGCTACACCTGGCACATCAA
TGACACGACGCGCGCCCTGCGAAGGTGGAGGGAGTTCGTGCGTAAGGCTA
CTGACCAAGAGAGATTTAGCCTGGAAATTTCGCGCATGTCCTCGGTCTCG
CCCTTGACGCCGATTGATCCGCGCTCTATCGCGTCGGGACTGGAGGCTTC
AGCGATTTCGAACAACGGGCGCGTCTCGGAGAGGAACGGAAAATCGAAGG
GCGGGACGGAGAACACCTCGTCCGCGAGGAAGTTGTGGGATTTGGCGCAG
GTGAACCACCTCCGGCGGAAGATGAAGCTACGAGTAGTCGTCGTCAGCGC
GATCTGCCGGCAGAGCTACACCTGGCAC
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