mRNA_H-elongata_contig17208.4442.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17208.4442.1
Unique NamemRNA_H-elongata_contig17208.4442.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17208.4442.1 vs. uniprot
Match: D8LDG6_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG6_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.940e-31
Identity = 58/70 (82.86%), Postives = 66/70 (94.29%), Query Frame = 1
Query:   10 KQAKDFGFTRVFNSKASQRETYESTMRPLVDDMFACRNALLFAYGMTNAGKTFTVLGEEGFPGLIPQALT 219
            +QAKDFGFTRVF+S+A Q ETYESTMRPLVDD+F+ +NALLFAYGMTNAGKT+TVLGE+G PGLIPQALT
Sbjct:  132 RQAKDFGFTRVFSSEAGQVETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQALT 201          
BLAST of mRNA_H-elongata_contig17208.4442.1 vs. uniprot
Match: A0A6H5JEB3_9PHAE (Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEB3_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.530e-30
Identity = 57/70 (81.43%), Postives = 65/70 (92.86%), Query Frame = 1
Query:   10 KQAKDFGFTRVFNSKASQRETYESTMRPLVDDMFACRNALLFAYGMTNAGKTFTVLGEEGFPGLIPQALT 219
            +QAKDFGFTRV +S+A Q ETYESTMRPLVDD+F+ +NALLFAYGMTNAGKT+TVLGE+G PGLIPQALT
Sbjct:  133 RQAKDFGFTRVLSSEAGQVETYESTMRPLVDDVFSAQNALLFAYGMTNAGKTYTVLGEDGSPGLIPQALT 202          
BLAST of mRNA_H-elongata_contig17208.4442.1 vs. uniprot
Match: F0XYT0_AURAN (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYT0_AURAN)

HSP 1 Score: 79.0 bits (193), Expect = 1.710e-17
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 1
Query:   19 KDFGFTRVFNSKASQRETYESTMRPLVDDMFACRNALLFAYGMTNAGKTFTVLGE---EGFPGLIPQAL 216
            +D+ FTRVF+  A+Q + YE+T  PLVD +FA R+ALLF YG+TNAGK++T++G+   E   GL+P+AL
Sbjct:    1 RDYTFTRVFDDAATQADVYEATTAPLVDALFAGRSALLFTYGVTNAGKSYTMMGDPEDEAARGLMPRAL 69          
BLAST of mRNA_H-elongata_contig17208.4442.1 vs. uniprot
Match: A0A1A8CSI1_9TELE (Kinesin family member 23 (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CSI1_9TELE)

HSP 1 Score: 75.5 bits (184), Expect = 1.950e-15
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   25 FGFTRVFNSKASQRETYESTMRPLVDDMFACRNALLFAYGMTNAGKTFTVLGEEGFPGLIPQAL 216
            + FT+VF    SQ E +E   RPLV+D+  C+N LLF YG+T +GKT+T+ G  G  GL+P++L
Sbjct:   55 YSFTKVFGINTSQMELFEDVARPLVEDLIQCKNGLLFTYGVTGSGKTYTMTGSPGEGGLLPRSL 118          
BLAST of mRNA_H-elongata_contig17208.4442.1 vs. uniprot
Match: H6S4D1_PLAVT (Kinesin (Fragment) n=1 Tax=Plasmopara viticola TaxID=143451 RepID=H6S4D1_PLAVT)

HSP 1 Score: 76.3 bits (186), Expect = 2.670e-15
Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   16 AKDFGFTRVFNSKASQRETYESTMRPLVDDMFACRNALLFAYGMTNAGKTFTVLGEEGFPGLIPQAL 216
            A +F F+R+F  +  Q+E +E+T RP++D  F  ++ L+FAYG+TN+GKT+TV G    PG++PQAL
Sbjct:  118 ATNFHFSRIFRQETQQKELFEATTRPVLDAAFEGKSGLVFAYGVTNSGKTYTVSGSSEAPGVLPQAL 184          
BLAST of mRNA_H-elongata_contig17208.4442.1 vs. uniprot
Match: A0A2D0RAZ0_ICTPU (Kinesin-like protein n=8 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0RAZ0_ICTPU)

HSP 1 Score: 77.4 bits (189), Expect = 6.540e-15
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   13 QAKDFGFTRVFNSKASQRETYESTMRPLVDDMFACRNALLFAYGMTNAGKTFTVLGEEGFPGLIPQAL 216
            Q   FGFT++F  +++Q E ++ T+R  V D   C+NAL+F+YG+TNAGKT T+ G    PG++P+AL
Sbjct:  104 QVHKFGFTKIFGPESTQAEFFDGTIRSQVQDFLQCKNALVFSYGVTNAGKTHTIQGSPKDPGILPRAL 171          
BLAST of mRNA_H-elongata_contig17208.4442.1 vs. uniprot
Match: A0A6S8U5N5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8U5N5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.940e-15
Identity = 35/72 (48.61%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   10 KQAKDFGFTRVFNSKASQRETYESTMRPLVDDMFACRNALLFAYGMTNAGKTFTVLG---EEGFPGLIPQAL 216
            ++A+D+ F RVF++ A+Q E YE T  PLVD +F  R+ALLF YG+TNAGK++T++G   +    GL+P++L
Sbjct:  119 REARDYTFARVFDAAATQNEVYERTTAPLVDGLFGGRSALLFTYGVTNAGKSYTMMGSPEDNDTAGLLPRSL 190          
BLAST of mRNA_H-elongata_contig17208.4442.1 vs. uniprot
Match: A0A662YGT2_9STRA (Kinesin motor domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGT2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-14
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   16 AKDFGFTRVFNSKASQRETYESTMRPLVDDMFACRNALLFAYGMTNAGKTFTVLGEEGFPGLIPQAL 216
            A  F F+R+F     QR+ +E+T RP++D  FA ++ L+FAYG+TN+GKT+T+ G    PG++PQAL
Sbjct:  125 ATSFHFSRIFRPDTEQRDLFEATTRPVLDAAFAGKSGLVFAYGVTNSGKTYTISGTGDAPGVLPQAL 191          
BLAST of mRNA_H-elongata_contig17208.4442.1 vs. uniprot
Match: A0A4D9CZ51_9STRA (Kinesin-like protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ51_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.220e-14
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   13 QAKDFGFTRVFNSKASQRETYESTMRPLVDDMFACRNALLFAYGMTNAGKTFTVLGEEGFPGLIPQAL 216
            Q ++F F RV   +  Q E Y  T +PLVD ++  ++ LLFAYG+TNAGKT+T++G+EG  G++P+AL
Sbjct:  126 QVREFTFHRVLGPECRQEEVYRQTAQPLVDALWMGQSGLLFAYGVTNAGKTYTIMGKEGDAGVLPRAL 193          
BLAST of mRNA_H-elongata_contig17208.4442.1 vs. uniprot
Match: UPI001939B508 (kinesin-like protein KIF20B isoform X1 n=2 Tax=Styela clava TaxID=7725 RepID=UPI001939B508)

HSP 1 Score: 76.6 bits (187), Expect = 1.240e-14
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 1
Query:   25 FGFTRVFNSKASQRETYESTMRPLVDDMFACRNALLFAYGMTNAGKTFTVLGEEGFPGLIPQAL 216
            F FT++F+   SQ+E Y  T  PLV D     NAL+F YG+TNAGKT+T+ G +G  G+IPQA+
Sbjct:  117 FTFTKIFDQATSQKEFYRETSHPLVQDFIDGNNALIFTYGVTNAGKTYTLQGSQGNEGIIPQAI 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17208.4442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDG6_ECTSI3.940e-3182.86Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JEB3_9PHAE2.530e-3081.43Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1... [more]
F0XYT0_AURAN1.710e-1753.62Kinesin motor domain-containing protein (Fragment)... [more]
A0A1A8CSI1_9TELE1.950e-1548.44Kinesin family member 23 (Fragment) n=1 Tax=Nothob... [more]
H6S4D1_PLAVT2.670e-1547.76Kinesin (Fragment) n=1 Tax=Plasmopara viticola Tax... [more]
A0A2D0RAZ0_ICTPU6.540e-1547.06Kinesin-like protein n=8 Tax=Siluroidei TaxID=1489... [more]
A0A6S8U5N5_9STRA8.940e-1548.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A662YGT2_9STRA1.120e-1447.76Kinesin motor domain-containing protein (Fragment)... [more]
A0A4D9CZ51_9STRA1.220e-1448.53Kinesin-like protein n=1 Tax=Nannochloropsis salin... [more]
UPI001939B5081.240e-1451.56kinesin-like protein KIF20B isoform X1 n=2 Tax=Sty... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17208contigH-elongata_contig17208:6476..6697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue2.9e-26
Seed eggNOG ortholog2880.D8LDG6
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930002.1313016-CDS-H-elongata_contig17208:6475..66971622930002.1313016-CDS-H-elongata_contig17208:6475..6697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17208 6476..6697 +
1691679241.3831484-CDS-H-elongata_contig17208:6475..66971691679241.3831484-CDS-H-elongata_contig17208:6475..6697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17208 6476..6697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17208.4442.1prot_H-elongata_contig17208.4442.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17208 6476..6697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17208.4442.1

>prot_H-elongata_contig17208.4442.1 ID=prot_H-elongata_contig17208.4442.1|Name=mRNA_H-elongata_contig17208.4442.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
FNEKQAKDFGFTRVFNSKASQRETYESTMRPLVDDMFACRNALLFAYGMT
NAGKTFTVLGEEGFPGLIPQALT*
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mRNA from alignment at H-elongata_contig17208:6476..6697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17208.4442.1 ID=mRNA_H-elongata_contig17208.4442.1|Name=mRNA_H-elongata_contig17208.4442.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig17208:6476..6697+ (Himanthalia elongata Himel1 dioecious)
TTTAACGAAAAACAGGCTAAGGACTTCGGCTTTACGCGGGTCTTCAATTC GAAGGCCTCTCAACGAGAGACGTACGAGTCTACCATGCGGCCCCTCGTGG ACGACATGTTTGCCTGTCGCAACGCCCTCTTGTTCGCGTATGGAATGACT AACGCAGGGAAGACCTTTACCGTCCTCGGCGAGGAGGGTTTTCCCGGCCT AATTCCTCAAGCGCTGACGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig17208:6476..6697+

>mRNA_H-elongata_contig17208.4442.1 ID=mRNA_H-elongata_contig17208.4442.1|Name=mRNA_H-elongata_contig17208.4442.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig17208:6476..6697+ (Himanthalia elongata Himel1 dioecious)
TTTAACGAAAAACAGGCTAAGGACTTCGGCTTTACGCGGGTCTTCAATTC
GAAGGCCTCTCAACGAGAGACGTACGAGTCTACCATGCGGCCCCTCGTGG
ACGACATGTTTGCCTGTCGCAACGCCCTCTTGTTCGCGTATGGAATGACT
AACGCAGGGAAGACCTTTACCGTCCTCGGCGAGGAGGGTTTTCCCGGCCT
AATTCCTCAAGCGCTGACGTGATTTAACGAAAAACAGGCTAAGGACTTCG
GCTTTACGCGGGTCTTCAATTCGAAGGCCTCTCAACGAGAGACGTACGAG
TCTACCATGCGGCCCCTCGTGGACGACATGTTTGCCTGTCGCAACGCCCT
CTTGTTCGCGTATGGAATGACTAACGCAGGGAAGACCTTTACCGTCCTCG
GCGAGGAGGGTTTTCCCGGCCTAATTCCTCAAGCGCTGACGTGA
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