mRNA_H-elongata_contig17203.4438.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17203.4438.1
Unique NamemRNA_H-elongata_contig17203.4438.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17203.4438.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 7.780e-13
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:  295 EGVASVENTFQSLAVVFGETLKPLGRGATRKQMELVWTGRMRHYNALIQAQQ 450
            +G ASVE TFQSLA  FGETL P+ RGATR++ E VWTGR+RH++A IQAQQ
Sbjct: 1069 QGAASVERTFQSLAAAFGETLVPVDRGATREEREAVWTGRVRHFHARIQAQQ 1120
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BLAST of mRNA_H-elongata_contig17203.4438.1 vs. uniprot
Match: A0A6H5J4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4R7_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.870e-12
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:  295 EGVASVENTFQSLAVVFGETLKPLGRGATRKQMELVWTGRMRHYNALIQAQQ 450
            +G ASVE TFQSLA  FGETL P+ R ATR++ E VWTGR+RH++A IQAQQ
Sbjct:  198 QGAASVERTFQSLAAAFGETLVPVDRAATREEREAVWTGRVRHFHARIQAQQ 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17203.4438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBB5_ECTSI7.780e-1369.23Essential abundant protein involved in regulation ... [more]
A0A6H5J4R7_9PHAE4.870e-1267.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17203contigH-elongata_contig17203:3165..3620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.8
Seed ortholog evalue4.9e-12
Seed eggNOG ortholog2880.D8LBB5
KEGG koko:K15192
EggNOG free text desc.helicase activity
EggNOG OGsKOG0392@1,KOG0392@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Hectar predicted targeting categoryother localisation
Exons1
Model size458
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930001.922085-CDS-H-elongata_contig17203:3164..36201622930001.922085-CDS-H-elongata_contig17203:3164..3620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 3165..3620 +
1691679241.341997-CDS-H-elongata_contig17203:3164..36201691679241.341997-CDS-H-elongata_contig17203:3164..3620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 3165..3620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17203.4438.1prot_H-elongata_contig17203.4438.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17203 3165..3620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17203.4438.1

>prot_H-elongata_contig17203.4438.1 ID=prot_H-elongata_contig17203.4438.1|Name=mRNA_H-elongata_contig17203.4438.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
PAKGEDNTTDNQETPAAAAADNEKSGPSRAPPSRGKRKRSKPENTTKATA
ADAVAAAPASRTSRRSSRRPEAKVVAPPGGKANTEAKQKIEAKATKESEG
VASVENTFQSLAVVFGETLKPLGRGATRKQMELVWTGRMRHYNALIQAQQ
V*
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mRNA from alignment at H-elongata_contig17203:3165..3620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17203.4438.1 ID=mRNA_H-elongata_contig17203.4438.1|Name=mRNA_H-elongata_contig17203.4438.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=456bp|location=Sequence derived from alignment at H-elongata_contig17203:3165..3620+ (Himanthalia elongata Himel1 dioecious)
CCTGCCAAAGGAGAAGATAACACCACTGACAACCAAGAAACACCCGCGGC
TGCGGCGGCGGACAACGAAAAATCCGGACCCTCGCGGGCACCGCCTTCTA
GAGGCAAGCGAAAGCGGTCGAAACCAGAAAATACCACCAAGGCTACCGCT
GCTGATGCTGTTGCTGCCGCGCCCGCCTCAAGAACTTCTCGGCGTTCCTC
CCGTCGACCTGAGGCCAAGGTGGTGGCGCCACCGGGTGGGAAGGCGAATA
CGGAAGCAAAACAAAAAATAGAAGCGAAGGCGACTAAAGAGTCGGAGGGA
GTGGCGAGCGTAGAAAATACGTTCCAGTCGCTCGCAGTAGTCTTCGGGGA
GACACTGAAGCCCCTGGGTAGAGGCGCTACGAGGAAGCAGATGGAATTAG
TGTGGACGGGGAGGATGAGACACTACAATGCTCTAATACAAGCGCAGCAG
GTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig17203:3165..3620+

>mRNA_H-elongata_contig17203.4438.1 ID=mRNA_H-elongata_contig17203.4438.1|Name=mRNA_H-elongata_contig17203.4438.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig17203:3165..3620+ (Himanthalia elongata Himel1 dioecious)
CCTGCCAAAGGAGAAGATAACACCACTGACAACCAAGAAACACCCGCGGC
TGCGGCGGCGGACAACGAAAAATCCGGACCCTCGCGGGCACCGCCTTCTA
GAGGCAAGCGAAAGCGGTCGAAACCAGAAAATACCACCAAGGCTACCGCT
GCTGATGCTGTTGCTGCCGCGCCCGCCTCAAGAACTTCTCGGCGTTCCTC
CCGTCGACCTGAGGCCAAGGTGGTGGCGCCACCGGGTGGGAAGGCGAATA
CGGAAGCAAAACAAAAAATAGAAGCGAAGGCGACTAAAGAGTCGGAGGGA
GTGGCGAGCGTAGAAAATACGTTCCAGTCGCTCGCAGTAGTCTTCGGGGA
GACACTGAAGCCCCTGGGTAGAGGCGCTACGAGGAAGCAGATGGAATTAG
TGTGGACGGGGAGGATGAGACACTACAATGCTCTAATACAAGCGCAGCAG
GTATAACCTGCCAAAGGAGAAGATAACACCACTGACAACCAAGAAACACC
CGCGGCTGCGGCGGCGGACAACGAAAAATCCGGACCCTCGCGGGCACCGC
CTTCTAGAGGCAAGCGAAAGCGGTCGAAACCAGAAAATACCACCAAGGCT
ACCGCTGCTGATGCTGTTGCTGCCGCGCCCGCCTCAAGAACTTCTCGGCG
TTCCTCCCGTCGACCTGAGGCCAAGGTGGTGGCGCCACCGGGTGGGAAGG
CGAATACGGAAGCAAAACAAAAAATAGAAGCGAAGGCGACTAAAGAGTCG
GAGGGAGTGGCGAGCGTAGAAAATACGTTCCAGTCGCTCGCAGTAGTCTT
CGGGGAGACACTGAAGCCCCTGGGTAGAGGCGCTACGAGGAAGCAGATGG
AATTAGTGTGGACGGGGAGGATGAGACACTACAATGCTCTAATACAAGCG
CAGCAGGTATAA
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