prot_H-elongata_contig17203.4436.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17203.4436.1
Unique Nameprot_H-elongata_contig17203.4436.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length149
Homology
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BLAST of mRNA_H-elongata_contig17203.4436.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.500e-10
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 0 
Query:   23 AAGDERCKRLLRRCFSELLSEKNDDVRSHCARLWSVLLEALACNTDAAATASAELATACLSVLFAPPSIP 92
            AA   RC+RLL RCF  LLSE++D VR H ARLWS LL+ L         A A L  +CL +LFAPP+ P
Sbjct:  636 AAAATRCERLLLRCFQALLSERDDGVREHSARLWSELLKGLGRADGHRRAAHASLMASCLGILFAPPATP 705
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BLAST of mRNA_H-elongata_contig17203.4436.1 vs. uniprot
Match: A0A6H5J7D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D4_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.230e-8
Identity = 33/61 (54.10%), Postives = 38/61 (62.30%), Query Frame = 0 
Query:   29 CKRLLRRCFSELLSEKNDDVRSHCARLWSVLLEALACNTDAAATASAELATACLSVLFAPP 89
            C+RLL RCF  LLSE++D VR H ARLWS LL+ L         A A L  +CL VLF PP
Sbjct:  263 CERLLLRCFQALLSERDDGVREHSARLWSELLKGLGRADGHRGAAHASLMASCLGVLFTPP 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17203.4436.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBB5_ECTSI2.500e-1052.86Essential abundant protein involved in regulation ... [more]
A0A6H5J7D4_9PHAE2.230e-854.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17203contigH-elongata_contig17203:1079..1722 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17203.4436.1mRNA_H-elongata_contig17203.4436.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17203 1079..1722 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17203.4436.1 ID=prot_H-elongata_contig17203.4436.1|Name=mRNA_H-elongata_contig17203.4436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
RARLETSNIQRAESVVAIAAAAAAGDERCKRLLRRCFSELLSEKNDDVRS
HCARLWSVLLEALACNTDAAATASAELATACLSVLFAPPSIPTSHIGLKP
AAADGARSCSDAARSTNHAHQAGGSTTSKRRQQQEKREIVSAEEWVGKG
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