mRNA_H-elongata_contig17203.4437.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17203.4437.1
Unique NamemRNA_H-elongata_contig17203.4437.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17203.4437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17203contigH-elongata_contig17203:1826..2404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size272
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17203.4437.1prot_H-elongata_contig17203.4437.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17203 1831..2404 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930001.7844474-UTR-H-elongata_contig17203:1825..18301622930001.7844474-UTR-H-elongata_contig17203:1825..1830Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17203 1826..1830 +
1691679241.2868774-UTR-H-elongata_contig17203:1825..18301691679241.2868774-UTR-H-elongata_contig17203:1825..1830Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17203 1826..1830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930001.8025293-CDS-H-elongata_contig17203:1830..20541622930001.8025293-CDS-H-elongata_contig17203:1830..2054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 1831..2054 +
1691679241.2962172-CDS-H-elongata_contig17203:1830..20541691679241.2962172-CDS-H-elongata_contig17203:1830..2054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 1831..2054 +
1622930001.8196673-CDS-H-elongata_contig17203:2361..24041622930001.8196673-CDS-H-elongata_contig17203:2361..2404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 2362..2404 +
1691679241.3060837-CDS-H-elongata_contig17203:2361..24041691679241.3060837-CDS-H-elongata_contig17203:2361..2404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17203 2362..2404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17203.4437.1

>prot_H-elongata_contig17203.4437.1 ID=prot_H-elongata_contig17203.4437.1|Name=mRNA_H-elongata_contig17203.4437.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MEQEHRRDTRAHDIDRFDRRGKTTMSTPWELVLTEAVRRAESAWAWEREL
AFLLMETCAGRGGDERSRNRSLLSSIDTGECEAIRAAWA
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mRNA from alignment at H-elongata_contig17203:1826..2404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17203.4437.1 ID=mRNA_H-elongata_contig17203.4437.1|Name=mRNA_H-elongata_contig17203.4437.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=579bp|location=Sequence derived from alignment at H-elongata_contig17203:1826..2404+ (Himanthalia elongata Himel1 dioecious)
CTTCAATGGAACAGGAGCACCGCCGAGACACCCGCGCCCATGATATCGAT
AGGTTCGACAGGCGGGGCAAGACCACGATGTCAACCCCCTGGGAGTTGGT
TTTAACGGAGGCGGTACGAAGGGCGGAATCGGCGTGGGCATGGGAACGCG
AGCTAGCGTTTTTGCTCATGGAGACCTGCGCCGGACGCGGAGGAGACGAA
CGATCGCGTAACCGTTCGCTGCTCTCGAGGTAGGAATCCGCACCCACCTT
CTCTGGGAAAAGTGGAGCATATAGCGGAGGCAAAAATAAATCGGGCAGTC
GGCTTGCTGCACGGCGTTCGGTTGGTCGCAGGATAACGATGCACCCAACA
CAAGTCGATGAAAAGGACATATATGATTCCCTCTATACACAGTAGAAGTG
AAATATTTGGTTTTGGAACAGAACGACACACGACCTCTAGCTGCATTCCC
GTCTTCACATGAAAAAACGCCTTCTTTGCCGATCCGCAAACGAACTCCCG
TATCGTATGAAAAACGCTAACCTCGATTGACCGAAGCATCGATACGGGGG
AATGCGAGGCGATACGAGCTGCCTGGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig17203:1826..2404+

>mRNA_H-elongata_contig17203.4437.1 ID=mRNA_H-elongata_contig17203.4437.1|Name=mRNA_H-elongata_contig17203.4437.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig17203:1826..2404+ (Himanthalia elongata Himel1 dioecious)
ATGGAACAGGAGCACCGCCGAGACACCCGCGCCCATGATATCGATAGGTT
CGACAGGCGGGGCAAGACCACGATGTCAACCCCCTGGGAGTTGGTTTTAA
CGGAGGCGGTACGAAGGGCGGAATCGGCGTGGGCATGGGAACGCGAGCTA
GCGTTTTTGCTCATGGAGACCTGCGCCGGACGCGGAGGAGACGAACGATC
GCGTAACCGTTCGCTGCTCTCGAGATGGAACAGGAGCACCGCCGAGACAC
CCGCGCCCATGATATCGATAGGTTCGACAGGCGGGGCAAGACCACGATGT
CAACCCCCTGGGAGTTGGTTTTAACGGAGGCGGTACGAAGGGCGGAATCG
GCGTGGGCATGGGAACGCGAGCTAGCGTTTTTGCTCATGGAGACCTGCGC
CGGACGCGGAGGAGACGAACGATCGCGTAACCGTTCGCTGCTCTCGAGCA
TCGATACGGGGGAATGCGAGGCGATACGAGCTGCCTGGGCCCATCGATAC
GGGGGAATGCGAGGCGATACGAGCTGCCTGGGCC
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