prot_H-elongata_contig172007.4433.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig172007.4433.1
Unique Nameprot_H-elongata_contig172007.4433.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length132
Homology
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BLAST of mRNA_H-elongata_contig172007.4433.1 vs. uniprot
Match: D7G8G2_ECTSI (BHLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G2_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 5.040e-47
Identity = 83/130 (63.85%), Postives = 102/130 (78.46%), Query Frame = 0 
Query:    1 MTSQQIDKLRLLLLESGLDTKANKCSVLSEVINYVTQLENGVQDLEVERQTWLRETADAPEVVRQGPNGGAIDCKQVLSNQSGALAMATVEGRVMDGNLKFKSLSGYGEEELKQLTLLGLTAPSDLEAAF 130
            MTS+QIDKLR LL E G+ TKANK SVLSEV +Y  QL+  ++ LE ER  W+ ET+D PEV RQ PNGG IDCKQV ++ S ALAMATVEGR+++ NL+F++LSG+  EELKQLTLL LTAPS+L+  F
Sbjct:  217 MTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETF 346
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BLAST of mRNA_H-elongata_contig172007.4433.1 vs. uniprot
Match: A0A6H5JG03_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG03_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 2.830e-45
Identity = 83/131 (63.36%), Postives = 103/131 (78.63%), Query Frame = 0 
Query:    1 MTSQQIDKLRLLLLESGLDTKANKCSVLSEVINYVTQLENGVQDLEVERQTWLRETADAPEVVRQGPNGGAIDCKQVLSNQSGALAMATVEGRVMDGNLKFKSLSGYGEEELKQLTLLGLTAPSDLEAAFE 131
            MTS+QIDKLR LL E G+ TKANK SVLSEV +Y  QL+  ++ LE ER  W+ ET+D PEV RQ PNGG IDCKQV ++ S ALAMATVEGR+++ NL+F++LSG+  EELKQLTLL LTAPS+L+  F+
Sbjct:  212 MTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQ 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172007.4433.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8G2_ECTSI5.040e-4763.85BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JG03_9PHAE2.830e-4563.36BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 35..55
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 2..62
e-value: 2.4E-6
score: 29.6
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 5..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172007contigH-elongata_contig172007:298..1204 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172007.4433.1mRNA_H-elongata_contig172007.4433.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig172007 286..1204 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig172007.4433.1 ID=prot_H-elongata_contig172007.4433.1|Name=mRNA_H-elongata_contig172007.4433.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MTSQQIDKLRLLLLESGLDTKANKCSVLSEVINYVTQLENGVQDLEVERQ
TWLRETADAPEVVRQGPNGGAIDCKQVLSNQSGALAMATVEGRVMDGNLK
FKSLSGYGEEELKQLTLLGLTAPSDLEAAFE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036638HLH_DNA-bd_sf