mRNA_H-elongata_contig172007.4433.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172007.4433.1
Unique NamemRNA_H-elongata_contig172007.4433.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig172007.4433.1 vs. uniprot
Match: D7G8G2_ECTSI (BHLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G2_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 3.360e-49
Identity = 87/134 (64.93%), Postives = 106/134 (79.10%), Query Frame = 1 
Query:    1 RRSLMTSQQIDKLRLLLLESGLDTKANKCSVLSEVINYVTQLENGVQDLEVERQTWLRETADAPEVVRQGPNGGAIDCKQVLSNQSGALAMATVEGRVMDGNLKFKSLSGYGEEELKQLTLLGLTAPSDLEAAF 402
            RRSLMTS+QIDKLR LL E G+ TKANK SVLSEV +Y  QL+  ++ LE ER  W+ ET+D PEV RQ PNGG IDCKQV ++ S ALAMATVEGR+++ NL+F++LSG+  EELKQLTLL LTAPS+L+  F
Sbjct:  213 RRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETF 346
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BLAST of mRNA_H-elongata_contig172007.4433.1 vs. uniprot
Match: A0A6H5JG03_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG03_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 2.350e-47
Identity = 87/135 (64.44%), Postives = 107/135 (79.26%), Query Frame = 1 
Query:    1 RRSLMTSQQIDKLRLLLLESGLDTKANKCSVLSEVINYVTQLENGVQDLEVERQTWLRETADAPEVVRQGPNGGAIDCKQVLSNQSGALAMATVEGRVMDGNLKFKSLSGYGEEELKQLTLLGLTAPSDLEAAFE 405
            RRSLMTS+QIDKLR LL E G+ TKANK SVLSEV +Y  QL+  ++ LE ER  W+ ET+D PEV RQ PNGG IDCKQV ++ S ALAMATVEGR+++ NL+F++LSG+  EELKQLTLL LTAPS+L+  F+
Sbjct:  208 RRSLMTSRQIDKLRKLLQECGIQTKANKSSVLSEVASYTAQLQQQIEQLEEERARWMAETSDVPEVGRQDPNGGTIDCKQVFAHASVALAMATVEGRLIESNLQFEALSGHRNEELKQLTLLSLTAPSELQETFQ 342
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172007.4433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8G2_ECTSI3.360e-4964.93BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JG03_9PHAE2.350e-4764.44BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172007contigH-elongata_contig172007:286..1204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue7.5e-09
Seed eggNOG ortholog35128.Thaps20899
EggNOG free text desc.helix loop helix domain
EggNOG OGs2C415@1,2T5J0@2759,2XF85@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size408
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172007.4433.1prot_H-elongata_contig172007.4433.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172007 298..1204 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930001.5259385-UTR-H-elongata_contig172007:285..2971622930001.5259385-UTR-H-elongata_contig172007:285..297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172007 286..297 +
1691679241.211129-UTR-H-elongata_contig172007:285..2971691679241.211129-UTR-H-elongata_contig172007:285..297Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172007 286..297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930001.543811-CDS-H-elongata_contig172007:297..4491622930001.543811-CDS-H-elongata_contig172007:297..449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172007 298..449 +
1691679241.2210727-CDS-H-elongata_contig172007:297..4491691679241.2210727-CDS-H-elongata_contig172007:297..449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172007 298..449 +
1622930001.571531-CDS-H-elongata_contig172007:679..7551622930001.571531-CDS-H-elongata_contig172007:679..755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172007 680..755 +
1691679241.2293475-CDS-H-elongata_contig172007:679..7551691679241.2293475-CDS-H-elongata_contig172007:679..755Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172007 680..755 +
1622930001.5883396-CDS-H-elongata_contig172007:1036..12041622930001.5883396-CDS-H-elongata_contig172007:1036..1204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172007 1037..1204 +
1691679241.238074-CDS-H-elongata_contig172007:1036..12041691679241.238074-CDS-H-elongata_contig172007:1036..1204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172007 1037..1204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172007.4433.1

>prot_H-elongata_contig172007.4433.1 ID=prot_H-elongata_contig172007.4433.1|Name=mRNA_H-elongata_contig172007.4433.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MTSQQIDKLRLLLLESGLDTKANKCSVLSEVINYVTQLENGVQDLEVERQ
TWLRETADAPEVVRQGPNGGAIDCKQVLSNQSGALAMATVEGRVMDGNLK
FKSLSGYGEEELKQLTLLGLTAPSDLEAAFE*
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mRNA from alignment at H-elongata_contig172007:286..1204+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172007.4433.1 ID=mRNA_H-elongata_contig172007.4433.1|Name=mRNA_H-elongata_contig172007.4433.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=919bp|location=Sequence derived from alignment at H-elongata_contig172007:286..1204+ (Himanthalia elongata Himel1 dioecious)
CGCAGGTCTCTAATGACGTCTCAGCAGATCGACAAGCTCCGGCTCCTCTT
GCTGGAAAGCGGCCTCGACACCAAGGCCAACAAATGCAGCGTGCTGTCCG
AGGTTATCAACTACGTGACACAGCTCGAAAATGGGGTCCAAGATCTTGAA
GTGGAACGGCAAACGTGAGCGACCCCCCCCCCCCCCCCCCCCCCCCCCAC
ACACACTTTTTTAAAAAGGCCCCCCCCTTCTCTCCGTAATAGCTCTTGTT
GATGCCTCGATGCCTCCCAGTGCATGAAATTGTTGCATACCCGTCCTGTC
GCTTGTCTATACGGCGTGTTTATTGTGCATCCGAGCTCGGCGGCTCTGCA
CTGAACTGAACTAACCGAACCCGGGAAAACGCTGACCGGGGTAGGTGGCT
CCGGGAGACCGCGGACGCTCCGGAGGTGGTACGGCAAGGTCCTAACGGCG
GAGCGATCGATTGCAAGCAGGTGAGGAAGGACGGCAGGCCCTTGCCGCAC
CGTGAAATCTTTAGGGCGCGCCGCTTCCGCGTGAGAGTCAACCGCGAACG
TATCGCGCTCGAGCACGCACAACGTGGCAAACCTTTTTTTATGATGGAAA
GGCAGGAATGCGGGGACGGGTGGTTAGGATGTTGGGAAAATAGAGATGTT
TCAGTGCCGTCCTTGCCCCTCGTGTAGGCTGTTCCTGATTGGTCCAGCCC
ACGGGCGGCTTCCAGCGGTGACGCGCGCCAACGCGCCGTGCTTGGGGACA
GGTGCTGTCGAATCAAAGCGGGGCCCTTGCCATGGCGACAGTGGAGGGGC
GGGTCATGGACGGCAACCTGAAATTTAAATCGCTGAGCGGGTACGGCGAA
GAAGAGCTAAAACAGCTAACCCTCCTGGGGCTCACCGCGCCGTCGGACCT
CGAAGCGGCTTTCGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig172007:286..1204+

>mRNA_H-elongata_contig172007.4433.1 ID=mRNA_H-elongata_contig172007.4433.1|Name=mRNA_H-elongata_contig172007.4433.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig172007:286..1204+ (Himanthalia elongata Himel1 dioecious)
ATGACGTCTCAGCAGATCGACAAGCTCCGGCTCCTCTTGCTGGAAAGCGG
CCTCGACACCAAGGCCAACAAATGCAGCGTGCTGTCCGAGGTTATCAACT
ACGTGACACAGCTCGAAAATGGGGTCCAAGATCTTGAAGTGGAACGGCAA
ACATGACGTCTCAGCAGATCGACAAGCTCCGGCTCCTCTTGCTGGAAAGC
GGCCTCGACACCAAGGCCAACAAATGCAGCGTGCTGTCCGAGGTTATCAA
CTACGTGACACAGCTCGAAAATGGGGTCCAAGATCTTGAAGTGGAACGGC
AAACGTGGCTCCGGGAGACCGCGGACGCTCCGGAGGTGGTACGGCAAGGT
CCTAACGGCGGAGCGATCGATTGCAAGCAGGTGGCTCCGGGAGACCGCGG
ACGCTCCGGAGGTGGTACGGCAAGGTCCTAACGGCGGAGCGATCGATTGC
AAGCAGGTGCTGTCGAATCAAAGCGGGGCCCTTGCCATGGCGACAGTGGA
GGGGCGGGTCATGGACGGCAACCTGAAATTTAAATCGCTGAGCGGGTACG
GCGAAGAAGAGCTAAAACAGCTAACCCTCCTGGGGCTCACCGCGCCGTCG
GACCTCGAAGCGGCTTTCGAGTGAGTGCTGTCGAATCAAAGCGGGGCCCT
TGCCATGGCGACAGTGGAGGGGCGGGTCATGGACGGCAACCTGAAATTTA
AATCGCTGAGCGGGTACGGCGAAGAAGAGCTAAAACAGCTAACCCTCCTG
GGGCTCACCGCGCCGTCGGACCTCGAAGCGGCTTTCGAGTGA
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