mRNA_H-elongata_contig172006.4432.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172006.4432.1
Unique NamemRNA_H-elongata_contig172006.4432.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig172006.4432.1 vs. uniprot
Match: A0A835YTW0_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.620e-11
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   22 QDLLKARPNSVALVVSTENLTQNLYHGNERSMLLQ 126
            +DLL ARPNS+ALVVSTENLTQNLYHGN+RSMLLQ
Sbjct:  264 RDLLMARPNSIALVVSTENLTQNLYHGNDRSMLLQ 298          
BLAST of mRNA_H-elongata_contig172006.4432.1 vs. uniprot
Match: A0A7S2B3F5_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3F5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.250e-10
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 LINPPCVQDLLKARPNSVALVVSTENLTQNLYHGNERSMLLQ 126
            +I+   V+ LLK+RPN +ALVVSTENLTQNLYHGN+RSMLLQ
Sbjct:  288 VISVDLVKKLLKSRPNCLALVVSTENLTQNLYHGNDRSMLLQ 329          
BLAST of mRNA_H-elongata_contig172006.4432.1 vs. uniprot
Match: F0YI68_AURAN (3-ketoacyl-CoA synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI68_AURAN)

HSP 1 Score: 63.2 bits (152), Expect = 1.710e-10
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 LINPPCVQDLLKARPNSVALVVSTENLTQNLYHGNERSMLLQ 126
            LI     Q++L++ PN VALVVSTENLTQNLYHGNERSMLLQ
Sbjct:  272 LIGIELAQNVLRSHPNKVALVVSTENLTQNLYHGNERSMLLQ 313          
BLAST of mRNA_H-elongata_contig172006.4432.1 vs. uniprot
Match: F0YHH3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHH3_AURAN)

HSP 1 Score: 62.8 bits (151), Expect = 2.320e-10
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 LINPPCVQDLLKARPNSVALVVSTENLTQNLYHGNERSMLLQ 126
            LI     Q++L++ PN +ALVVSTENLTQNLYHGNERSMLLQ
Sbjct: 4801 LIGIELAQNVLRSHPNKIALVVSTENLTQNLYHGNERSMLLQ 4842          
BLAST of mRNA_H-elongata_contig172006.4432.1 vs. uniprot
Match: A0A7S1U9N3_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9N3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.970e-10
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 LINPPCVQDLLKARPNSVALVVSTENLTQNLYHGNERSMLLQ 126
            LI+    + LLKA PNS ALVVSTENLTQNLYHGN+RSML+Q
Sbjct:  259 LISIDLAKRLLKAHPNSTALVVSTENLTQNLYHGNKRSMLVQ 300          
BLAST of mRNA_H-elongata_contig172006.4432.1 vs. uniprot
Match: A0A8J2S738_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S738_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.080e-9
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1
Query:    1 LINPPCVQDLLKARPNSVALVVSTENLTQNLYHGNERSMLLQ 126
            L+     Q++L++ P+ VALVVSTENLTQNLYHGN+RSMLLQ
Sbjct:  271 LVGIELAQNILRSHPSKVALVVSTENLTQNLYHGNDRSMLLQ 312          
BLAST of mRNA_H-elongata_contig172006.4432.1 vs. uniprot
Match: A0A7S2XYV1_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYV1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.850e-9
Identity = 28/33 (84.85%), Postives = 32/33 (96.97%), Query Frame = 1
Query:   28 LLKARPNSVALVVSTENLTQNLYHGNERSMLLQ 126
            L+++RP+S ALVVSTENLTQNLYHGNERSMLLQ
Sbjct:  276 LMESRPHSTALVVSTENLTQNLYHGNERSMLLQ 308          
BLAST of mRNA_H-elongata_contig172006.4432.1 vs. uniprot
Match: A0A7S2WTL4_9STRA (3-ketoacyl-CoA synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTL4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.330e-9
Identity = 27/35 (77.14%), Postives = 33/35 (94.29%), Query Frame = 1
Query:   22 QDLLKARPNSVALVVSTENLTQNLYHGNERSMLLQ 126
            ++LL++RPNS+ALVVSTENLTQNLY GNER ML+Q
Sbjct:  260 KNLLRSRPNSIALVVSTENLTQNLYRGNERMMLIQ 294          
BLAST of mRNA_H-elongata_contig172006.4432.1 vs. uniprot
Match: A0A444ZZZ3_ARAHY (FAE domain-containing protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444ZZZ3_ARAHY)

HSP 1 Score: 53.5 bits (127), Expect = 6.000e-8
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 1
Query:    1 LINPPCVQDLLKARPNSVALVVSTENLTQNLYHGNERSMLL 123
            LI+    +DLLKA PNS A+VVST+N+T N Y GNERSMLL
Sbjct:   26 LISIDLAKDLLKANPNSYAVVVSTDNITLNWYFGNERSMLL 66          
BLAST of mRNA_H-elongata_contig172006.4432.1 vs. uniprot
Match: W9S2B9_9ROSA (3-ketoacyl-CoA synthase n=1 Tax=Morus notabilis TaxID=981085 RepID=W9S2B9_9ROSA)

HSP 1 Score: 55.1 bits (131), Expect = 1.220e-7
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1
Query:    1 LINPPCVQDLLKARPNSVALVVSTENLTQNLYHGNERSMLL 123
            LI+    +DLL+A PNS A+VVSTEN+TQN Y GN+RSMLL
Sbjct:  266 LISIDLAKDLLRANPNSYAVVVSTENITQNWYFGNDRSMLL 306          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172006.4432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTW0_9STRA2.620e-1188.573-ketoacyl-CoA synthase n=1 Tax=Tribonema minus Ta... [more]
A0A7S2B3F5_9STRA1.250e-1073.813-ketoacyl-CoA synthase n=1 Tax=Dictyocha speculum... [more]
F0YI68_AURAN1.710e-1073.813-ketoacyl-CoA synthase n=1 Tax=Aureococcus anopha... [more]
F0YHH3_AURAN2.320e-1071.43Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1U9N3_9STRA5.970e-1073.813-ketoacyl-CoA synthase n=1 Tax=Phaeomonas parva T... [more]
A0A8J2S738_9STRA2.080e-966.673-ketoacyl-CoA synthase n=1 Tax=Pelagomonas calceo... [more]
A0A7S2XYV1_9STRA2.850e-984.853-ketoacyl-CoA synthase n=1 Tax=Fibrocapsa japonic... [more]
A0A7S2WTL4_9STRA5.330e-977.143-ketoacyl-CoA synthase n=1 Tax=Rhizochromulina ma... [more]
A0A444ZZZ3_ARAHY6.000e-865.85FAE domain-containing protein n=1 Tax=Arachis hypo... [more]
W9S2B9_9ROSA1.220e-765.853-ketoacyl-CoA synthase n=1 Tax=Morus notabilis Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172006contigH-elongata_contig172006:75..200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog44056.XP_009040076.1
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K15397
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,map00062,map01110
KEGG ModuleM00415
EggNOG free text desc.synthase
EggNOG OGs2QPKZ@2759,COG3424@1
EC2.3.1.199
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930001.4630837-CDS-H-elongata_contig172006:74..2001622930001.4630837-CDS-H-elongata_contig172006:74..200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172006 75..200 -
1691679241.1899364-CDS-H-elongata_contig172006:74..2001691679241.1899364-CDS-H-elongata_contig172006:74..200Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172006 75..200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172006.4432.1prot_H-elongata_contig172006.4432.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172006 75..200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172006.4432.1

>prot_H-elongata_contig172006.4432.1 ID=prot_H-elongata_contig172006.4432.1|Name=mRNA_H-elongata_contig172006.4432.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
LINPPCVQDLLKARPNSVALVVSTENLTQNLYHGNERSMLLQ
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mRNA from alignment at H-elongata_contig172006:75..200-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172006.4432.1 ID=mRNA_H-elongata_contig172006.4432.1|Name=mRNA_H-elongata_contig172006.4432.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig172006:75..200- (Himanthalia elongata Himel1 dioecious)
TTGATAAACCCGCCGTGTGTCCAGGACCTTCTCAAGGCAAGGCCGAACTC GGTCGCCCTGGTGGTGAGCACGGAAAACCTCACCCAAAATCTCTACCACG GAAACGAGCGTTCGATGCTCTTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig172006:75..200-

>mRNA_H-elongata_contig172006.4432.1 ID=mRNA_H-elongata_contig172006.4432.1|Name=mRNA_H-elongata_contig172006.4432.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig172006:75..200- (Himanthalia elongata Himel1 dioecious)
TTGATAAACCCGCCGTGTGTCCAGGACCTTCTCAAGGCAAGGCCGAACTC
GGTCGCCCTGGTGGTGAGCACGGAAAACCTCACCCAAAATCTCTACCACG
GAAACGAGCGTTCGATGCTCTTGCAGTTGATAAACCCGCCGTGTGTCCAG
GACCTTCTCAAGGCAAGGCCGAACTCGGTCGCCCTGGTGGTGAGCACGGA
AAACCTCACCCAAAATCTCTACCACGGAAACGAGCGTTCGATGCTCTTGC
AG
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