mRNA_H-elongata_contig171950.4430.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171950.4430.1
Unique NamemRNA_H-elongata_contig171950.4430.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig171950.4430.1 vs. uniprot
Match: D8LFF4_ECTSI (Protein kinase domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFF4_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 1.900e-67
Identity = 136/230 (59.13%), Postives = 153/230 (66.52%), Query Frame = 1 
Query:    1 DGGGGRRASRGRAHSFVGTAIYMSPERLQGEPYGPAADVWSLGLTLLTLAIGSYPLEISSFHSGFSASGHSVASIGGGSRGSGEYPDTGNAAPSPSPFPASTITPGSTPGNPRGSGVF-PAAHQVP--------------------REFSRGESIAEGGDPAASPPFAEVFRSVPKFSRREPMSVFMPPERAEQLRPSKSFMSFLTACLRYDAEERITAGEMLKHPFLQV 627
            +G GGRRASRGRAHSFVGTAIYMSPERLQGEPYGP+ADVWSLGL+LLTLAIG YPLEISSFHSG + SG        GSR SGE+P+    AP P+       +   +    R SG F P    V                     R  SRG   A G + A SPPF E FRSVP+FSRREPMSVFMPPERA +LR SK+F+SFL  CLRY+ E+R+TA EMLKHPFLQV
Sbjct:  281 EGAGGRRASRGRAHSFVGTAIYMSPERLQGEPYGPSADVWSLGLSLLTLAIGKYPLEISSFHSGINGSG--------GSRSSGEFPN----APGPAATGGGLSSGAPSSAGSRFSGAFSPLVKTVATTPSTSASLXXXXXXXXLRSRSSSRGSIGAGGAESAGSPPFFEAFRSVPRFSRREPMSVFMPPERAAELRLSKAFVSFLRGCLRYEPEKRMTAQEMLKHPFLQV 498
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BLAST of mRNA_H-elongata_contig171950.4430.1 vs. uniprot
Match: A0A6H5K3B8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B8_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 7.370e-61
Identity = 134/245 (54.69%), Postives = 151/245 (61.63%), Query Frame = 1 
Query:    1 DGGGGRRASRGRAHSFVGTAIYMSPERLQGEPYGPAADVWSLGLTLLTLAIGSYPLEI-----------------SSFHSGFSASGHSVASIGGGSRGSGEYPDTGNAAPSPSPFPASTITPGSTPGNPRGSGVF-PAAHQVP-------------------REFSRGESIAEGGDPAASPPFAEVFRSVPKFSRREPMSVFMPPERAEQLRPSKSFMSFLTACLRYDAEERITAGEMLKHPFLQ 624
            +G GGR+ASRGRAHSFVGTAIYMSPERLQGEPYGP+ADVWSLGL+LLTLAIG YPLEI                 SSFHS  + SG        GSR SGE+PD    AP P+       +   +    R SG F P    V                    R  SRG   A G + A SPPF E FRSVP+FSRREPMSVFMPPERA +LR SK+F+SFL  CLRY+ E+R+TA EMLKHPFLQ
Sbjct:  838 EGAGGRQASRGRAHSFVGTAIYMSPERLQGEPYGPSADVWSLGLSLLTLAIGKYPLEIPKNNLYWNLVKLVCPQISSFHSSINGSG--------GSRSSGEFPD----APGPAAAGGGLSSGAPSSAGSRLSGAFSPMVKTVATXXXXXXXXXXXXXXXLRSRSSSRGSIGAGGAESAGSPPFFEAFRSVPRFSRREPMSVFMPPERAAELRLSKTFVSFLRGCLRYEPEKRMTAQEMLKHPFLQ 1070
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BLAST of mRNA_H-elongata_contig171950.4430.1 vs. uniprot
Match: D8LLW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLW0_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.720e-14
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:  484 MSVFMPPERAEQLRPSKSFMSFLTACLRYDAEERITAGEMLKHPFLQV 627
            MSVFMPPERA +LR SK+F+SFL  CLRY+ E+R+TA EMLKHPFLQV
Sbjct:    1 MSVFMPPERAAELRLSKAFVSFLRGCLRYEPEKRMTAQEMLKHPFLQV 48
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BLAST of mRNA_H-elongata_contig171950.4430.1 vs. uniprot
Match: A0A835YL65_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL65_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.480e-13
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   37 AHSFVGTAIYMSPERLQGEPYGPAADVWSLGLTLLTLAIGSYPLEI 174
            AH+FVGTA+YMSPERL+GE Y  ++DVWSLGL+LLTLA+G +PL +
Sbjct:  187 AHTFVGTAVYMSPERLRGEEYSFSSDVWSLGLSLLTLALGRFPLNV 232
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BLAST of mRNA_H-elongata_contig171950.4430.1 vs. uniprot
Match: A0A654GIZ2_9CEST (Protein kinase domain-containing protein n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A654GIZ2_9CEST)

HSP 1 Score: 69.7 bits (169), Expect = 1.850e-10
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   37 AHSFVGTAIYMSPERLQGEPYGPAADVWSLGLTLLTLAIGSYPL----EISSFHSGFS 198
            AHSFVG+  YM+PER+ G+PY  ++DVWSLGLTL+ LA G YP+    + S + SGFS
Sbjct:  197 AHSFVGSRSYMAPERISGKPYNTSSDVWSLGLTLIELATGRYPIPAIEDESLYFSGFS 254
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BLAST of mRNA_H-elongata_contig171950.4430.1 vs. uniprot
Match: A0A0K2TY06_LEPSM (MAP kinseERK kinase [Bombyx mori] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2TY06_LEPSM)

HSP 1 Score: 69.7 bits (169), Expect = 1.940e-10
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   37 AHSFVGTAIYMSPERLQGEPYGPAADVWSLGLTLLTLAIGSYPL 168
            A+SFVGT  YMSPERLQG PY  A+DVWSLGL+LL +++G YP+
Sbjct:  244 ANSFVGTRSYMSPERLQGSPYSVASDVWSLGLSLLEISLGMYPI 287
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BLAST of mRNA_H-elongata_contig171950.4430.1 vs. uniprot
Match: A0A7M3Q0E0_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3Q0E0_SPIER)

HSP 1 Score: 69.7 bits (169), Expect = 2.110e-10
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   37 AHSFVGTAIYMSPERLQGEPYGPAADVWSLGLTLLTLAIGSYPL----EISSFHSGFS 198
            AHSFVG+  YM+PER+ G+PY  ++DVWSLGLTL+ LA G YP+    + S + SGFS
Sbjct:  339 AHSFVGSRSYMAPERISGKPYNTSSDVWSLGLTLIELATGRYPIPAIEDESLYFSGFS 396
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BLAST of mRNA_H-elongata_contig171950.4430.1 vs. uniprot
Match: A0A0R3UJD9_MESCO (Protein kinase domain-containing protein n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UJD9_MESCO)

HSP 1 Score: 69.7 bits (169), Expect = 2.260e-10
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:   37 AHSFVGTAIYMSPERLQGEPYGPAADVWSLGLTLLTLAIGSYPLEI----SSFHSGFS 198
            AHSFVG+  YM+PER+ G+ Y  ++DVWSLGLTL+ LA G YP+      S +H+GFS
Sbjct:  338 AHSFVGSRSYMAPERISGQSYNTSSDVWSLGLTLIELATGHYPIPAIENESQYHTGFS 395
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BLAST of mRNA_H-elongata_contig171950.4430.1 vs. uniprot
Match: A0A0X3PZN3_SCHSO (Protein kinase domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0X3PZN3_SCHSO)

HSP 1 Score: 69.7 bits (169), Expect = 2.280e-10
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   37 AHSFVGTAIYMSPERLQGEPYGPAADVWSLGLTLLTLAIGSYPL----EISSFHSGFS 198
            AHSFVG+  YM+PER+ G+PY  ++DVWSLGLTL+ LA G YP+    + S + SGFS
Sbjct:  339 AHSFVGSRSYMAPERISGKPYNTSSDVWSLGLTLIELATGRYPIPAIEDESLYFSGFS 396
[Close]
BLAST of mRNA_H-elongata_contig171950.4430.1 vs. uniprot
Match: A0A7S1U7Z8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7Z8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.290e-10
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   22 ASRGR-AHSFVGTAIYMSPERLQGEPYGPAADVWSLGLTLLTLAIGSYPLEI 174
            A  GR A SFVGT +YMSPER+ G  YG  +DVWSLGL+LLT+A+G  PL++
Sbjct:   29 AEHGRKAGSFVGTVMYMSPERISGGEYGYNSDVWSLGLSLLTVALGEMPLQM 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171950.4430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFF4_ECTSI1.900e-6759.13Protein kinase domain-containing protein (Fragment... [more]
A0A6H5K3B8_9PHAE7.370e-6154.69Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LLW0_ECTSI1.720e-1475.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YL65_9STRA8.480e-1369.57Kinase-like domain-containing protein (Fragment) n... [more]
A0A654GIZ2_9CEST1.850e-1056.90Protein kinase domain-containing protein n=2 Tax=D... [more]
A0A0K2TY06_LEPSM1.940e-1068.18MAP kinseERK kinase [Bombyx mori] n=2 Tax=Lepeopht... [more]
A0A7M3Q0E0_SPIER2.110e-1056.90Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A0R3UJD9_MESCO2.260e-1055.17Protein kinase domain-containing protein n=2 Tax=M... [more]
A0A0X3PZN3_SCHSO2.280e-1056.90Protein kinase domain-containing protein n=1 Tax=S... [more]
A0A7S1U7Z8_9STRA2.290e-1061.54Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171950contigH-elongata_contig171950:116..1215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.0
Seed ortholog evalue1.2e-58
Seed eggNOG ortholog2880.D8LFF4
KEGG koko:K04412,ko:K08838,ko:K16288,ko:K17546
KEGG Pathwayko04010,ko04214,ko04390,ko04391,ko04392,map04010,map04214,map04390,map04391,map04392
KEGG ModuleM00683
GOsGO:0007154,GO:0007165,GO:0007186,GO:0007212,GO:0008150,GO:0009987,GO:0023052,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007
EggNOG free text desc.hippo signaling
EggNOG OGsKOG0574@1,KOG0574@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-14_001880.1
Exons2
Model size627
Cds size627
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930001.228709-CDS-H-elongata_contig171950:115..2861622930001.228709-CDS-H-elongata_contig171950:115..286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171950 116..286 +
1691679241.0835526-CDS-H-elongata_contig171950:115..2861691679241.0835526-CDS-H-elongata_contig171950:115..286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171950 116..286 +
1622930001.244488-CDS-H-elongata_contig171950:759..12151622930001.244488-CDS-H-elongata_contig171950:759..1215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171950 760..1215 +
1691679241.0941262-CDS-H-elongata_contig171950:759..12151691679241.0941262-CDS-H-elongata_contig171950:759..1215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171950 760..1215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171950.4430.1prot_H-elongata_contig171950.4430.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171950 116..1215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171950.4430.1

>prot_H-elongata_contig171950.4430.1 ID=prot_H-elongata_contig171950.4430.1|Name=mRNA_H-elongata_contig171950.4430.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp
DGGGGRRASRGRAHSFVGTAIYMSPERLQGEPYGPAADVWSLGLTLLTLA
IGSYPLEISSFHSGFSASGHSVASIGGGSRGSGEYPDTGNAAPSPSPFPA
STITPGSTPGNPRGSGVFPAAHQVPREFSRGESIAEGGDPAASPPFAEVF
RSVPKFSRREPMSVFMPPERAEQLRPSKSFMSFLTACLRYDAEERITAGE
MLKHPFLQV
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mRNA from alignment at H-elongata_contig171950:116..1215+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171950.4430.1 ID=mRNA_H-elongata_contig171950.4430.1|Name=mRNA_H-elongata_contig171950.4430.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1100bp|location=Sequence derived from alignment at H-elongata_contig171950:116..1215+ (Himanthalia elongata Himel1 dioecious)
GATGGCGGCGGTGGTAGGCGGGCTAGTCGTGGGAGGGCCCATTCGTTCGT
CGGCACCGCGATTTATATGTCGCCCGAGCGGCTTCAGGGGGAGCCGTACG
GCCCGGCGGCTGATGTATGGAGCCTCGGGCTGACGCTGTTGACGCTGGCG
ATTGGAAGTTACCCTCTAGAGGTGACAAGGGTTTTGACGAGTTGGATGGG
CATTTACAGAGTCGGGAAGGGGGGTCTATGGAGGGTCCCGCCGCTATCGA
TGTGAAAAGCCTTTTTTTAATTGAAAATTTAAAGCACATAACATATAAAA
TAGGCTCACCGCTTCAAAATCCTGTGGTCAATACAGGATTGGGAATTGTC
CGAAACGGCATGTGATTTGAGGAAAAGCAATCACGGCTTTCTCAAAGCGC
GACCGTTTCAACCGTTTCAATTATTCAATCATTCAATCATTCACAGCATA
TACGACGCGGTCGATTCGAATCGTTTGGACAGTGCAACCAGATTCCTAAA
CCAGACTTCTGCTTACAGATTATCGCACCCCGAGATTCCCCCGTACCCCC
ATATGTAAACCCTTCCATTTTTTTTCCATTTTTTCTTCTCCAGATCCCCA
AGAACAACCTATACTGGAACCTAGTAAAGCTGGTATGCCCACAGATTAGC
TCCTTCCACAGCGGCTTCAGCGCGAGCGGGCACAGCGTCGCCTCGATCGG
TGGCGGCAGCCGGGGCAGTGGCGAATACCCCGACACCGGAAATGCCGCCC
CCTCTCCGTCCCCTTTCCCCGCCTCGACGATAACGCCAGGATCCACGCCC
GGAAACCCTCGTGGTTCGGGCGTGTTTCCGGCGGCGCACCAGGTGCCGCG
AGAGTTCAGCCGAGGAGAGTCGATCGCGGAAGGGGGTGATCCTGCCGCTT
CCCCTCCTTTCGCTGAGGTGTTTCGATCGGTCCCGAAGTTCTCGAGGCGA
GAGCCGATGTCGGTGTTTATGCCGCCCGAGCGTGCCGAACAGCTTCGGCC
TTCAAAAAGCTTCATGTCGTTCCTGACGGCCTGCCTGAGATACGACGCCG
AGGAGCGTATAACCGCTGGGGAGATGCTGAAGCACCCGTTCCTGCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig171950:116..1215+

>mRNA_H-elongata_contig171950.4430.1 ID=mRNA_H-elongata_contig171950.4430.1|Name=mRNA_H-elongata_contig171950.4430.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig171950:116..1215+ (Himanthalia elongata Himel1 dioecious)
GATGGCGGCGGTGGTAGGCGGGCTAGTCGTGGGAGGGCCCATTCGTTCGT
CGGCACCGCGATTTATATGTCGCCCGAGCGGCTTCAGGGGGAGCCGTACG
GCCCGGCGGCTGATGTATGGAGCCTCGGGCTGACGCTGTTGACGCTGGCG
ATTGGAAGTTACCCTCTAGAGGATGGCGGCGGTGGTAGGCGGGCTAGTCG
TGGGAGGGCCCATTCGTTCGTCGGCACCGCGATTTATATGTCGCCCGAGC
GGCTTCAGGGGGAGCCGTACGGCCCGGCGGCTGATGTATGGAGCCTCGGG
CTGACGCTGTTGACGCTGGCGATTGGAAGTTACCCTCTAGAGATTAGCTC
CTTCCACAGCGGCTTCAGCGCGAGCGGGCACAGCGTCGCCTCGATCGGTG
GCGGCAGCCGGGGCAGTGGCGAATACCCCGACACCGGAAATGCCGCCCCC
TCTCCGTCCCCTTTCCCCGCCTCGACGATAACGCCAGGATCCACGCCCGG
AAACCCTCGTGGTTCGGGCGTGTTTCCGGCGGCGCACCAGGTGCCGCGAG
AGTTCAGCCGAGGAGAGTCGATCGCGGAAGGGGGTGATCCTGCCGCTTCC
CCTCCTTTCGCTGAGGTGTTTCGATCGGTCCCGAAGTTCTCGAGGCGAGA
GCCGATGTCGGTGTTTATGCCGCCCGAGCGTGCCGAACAGCTTCGGCCTT
CAAAAAGCTTCATGTCGTTCCTGACGGCCTGCCTGAGATACGACGCCGAG
GAGCGTATAACCGCTGGGGAGATGCTGAAGCACCCGTTCCTGCAGGTGAT
TAGCTCCTTCCACAGCGGCTTCAGCGCGAGCGGGCACAGCGTCGCCTCGA
TCGGTGGCGGCAGCCGGGGCAGTGGCGAATACCCCGACACCGGAAATGCC
GCCCCCTCTCCGTCCCCTTTCCCCGCCTCGACGATAACGCCAGGATCCAC
GCCCGGAAACCCTCGTGGTTCGGGCGTGTTTCCGGCGGCGCACCAGGTGC
CGCGAGAGTTCAGCCGAGGAGAGTCGATCGCGGAAGGGGGTGATCCTGCC
GCTTCCCCTCCTTTCGCTGAGGTGTTTCGATCGGTCCCGAAGTTCTCGAG
GCGAGAGCCGATGTCGGTGTTTATGCCGCCCGAGCGTGCCGAACAGCTTC
GGCCTTCAAAAAGCTTCATGTCGTTCCTGACGGCCTGCCTGAGATACGAC
GCCGAGGAGCGTATAACCGCTGGGGAGATGCTGAAGCACCCGTTCCTGCA
GGTG
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