mRNA_H-elongata_contig171919.4428.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171919.4428.1
Unique NamemRNA_H-elongata_contig171919.4428.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig171919.4428.1 vs. uniprot
Match: A0A6H5KU09_9PHAE (Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU09_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.900e-22
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  196 PLGAIRQHRYAVKRVRCSTHPNPAGLVASASYDMSVILWN----PYPS-----PERARSSSGNQQGSR----VEICVGHTEFVAGLAFSFTDPRLLASCALDRRLCFW 480
            PL  + +HRYAVKR+R S  P+ +G++A+ASYD SVILW+    P P+     P       G   G R    ++ CVGHTEFVAG+AFS  +PRL+A+CA DRRLC W
Sbjct:  239 PLSVMLEHRYAVKRLRFS--PHQSGVLATASYDTSVILWDTKITPPPAGTGMFPLAGEGRGGGGHGRRSPRLLDRCVGHTEFVAGVAFSLFEPRLMATCAWDRRLCLW 344          
BLAST of mRNA_H-elongata_contig171919.4428.1 vs. uniprot
Match: A0A1J7JQA2_9PEZI (Peroxin-7 n=3 Tax=Coniochaeta TaxID=79808 RepID=A0A1J7JQA2_9PEZI)

HSP 1 Score: 76.3 bits (186), Expect = 2.460e-13
Identity = 51/163 (31.29%), Postives = 76/163 (46.63%), Query Frame = 1
Query:    1 EVLAGDWDKYKHPVVATGCADGSVRTWDLRQPRCAPQRLGASTKQYRFSSSSSSNCLLFTWWHSEPLGAIRQHRYAVKRVRCSTHPNPAGLVASASYDMSVILWNPYPSPERARSSSGN--QQGSRVEICVGHTEFVAGLAFS-FTDPRLLASCALDRRLCFW 480
            E+L  DW+KY H +VA    D  +RT+D+R P                                 P+G +R H YAV+R+  S  P+ A ++ SASYDM+V +W    S   A  + G   ++G ++ +   HTEFV G+ +  F     +ASC  D R+  W
Sbjct:  217 EILTHDWNKYNHALVACAGVDRVIRTFDVRNPT------------------------------GGPVGLLRGHEYAVRRLAWS--PHAADVMVSASYDMTVRVWTD-GSTMAAPQTGGPPVREGVQLGLMNRHTEFVTGVDWCLFGSGGWVASCGWDERVLLW 346          
BLAST of mRNA_H-elongata_contig171919.4428.1 vs. uniprot
Match: A0A2N1JCI6_9BASI (Peroxin-7 n=1 Tax=Malassezia vespertilionis TaxID=2020962 RepID=A0A2N1JCI6_9BASI)

HSP 1 Score: 72.0 bits (175), Expect = 6.740e-12
Identity = 49/160 (30.63%), Postives = 73/160 (45.62%), Query Frame = 1
Query:    1 EVLAGDWDKYKHPVVATGCADGSVRTWDLRQPRCAPQRLGASTKQYRFSSSSSSNCLLFTWWHSEPLGAIRQHRYAVKRVRCSTHPNPAGLVASASYDMSVILWNPYPSPERARSSSGNQQGSRVEICVGHTEFVAGLAFSFTDPRLLASCALDRRLCFW 480
            EVL+ DW+KY+   +ATG  D +++ WD R          A++   R                      +  H YAV+ V  S  P+ AG++ASASYDMSV +WN     E   +       +  ++   H EF +G+A+S   P +LAS + D     W
Sbjct:  192 EVLSLDWNKYRQMTLATGSTDRTIKIWDGRG--------NAASMAER--------------------AVVVGHNYAVRDVAWS--PHEAGMLASASYDMSVRIWNV---DEAVATGQVPMLNTPKKVYPMHKEFASGVAWSLFQPGMLASTSWDMETHVW 318          
BLAST of mRNA_H-elongata_contig171919.4428.1 vs. uniprot
Match: A0A8E2AWA2_9APHY (Peroxin-7 n=1 Tax=Obba rivulosa TaxID=1052685 RepID=A0A8E2AWA2_9APHY)

HSP 1 Score: 69.3 bits (168), Expect = 7.320e-11
Identity = 48/163 (29.45%), Postives = 77/163 (47.24%), Query Frame = 1
Query:    1 EVLAGDWDKYKHPVVATGCADGSVRTWDLRQPRCAPQRLGASTKQYRFSSSSSSNCLLFTWWHSEPLGAIRQ-----HRYAVKRVRCSTHPNPAGLVASASYDMSVILWNPYPSPERARSSSGNQQGSRV-EICVGHTEFVAGLAFSFTDPRLLASCALDRRL 471
            E+L+ DW+KY+  ++A+   D  ++ WD R  +  P+                          +  +G I +     H YAV++V+ S  P+ AGL+ASASYDM+  +W          +++    G+ +  I   HTEFV G ++S  D   LASC  D +L
Sbjct:  220 EILSLDWNKYRPWLIASAGVDKVIKVWDCRMVKIGPEAA-----------------------QTPAVGGICETQFVGHEYAVRKVQWS--PHRAGLLASASYDMTCRIW----------TTNQTLNGTHLLYIHDPHTEFVMGCSWSLYDEGFLASCGWDCKL 347          
BLAST of mRNA_H-elongata_contig171919.4428.1 vs. uniprot
Match: A0A8J4UR91_9MYCE (Peroxin-7 n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UR91_9MYCE)

HSP 1 Score: 68.9 bits (167), Expect = 8.160e-11
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 1
Query:  196 PLGAIRQHRYAVKRVRCSTHPNPAGLVASASYDMSVILWNPYPSPERARSSSGNQQGSRVEICVGHTEFVAGLAFSFTDPRLLASCALDRRLCFW 480
            P   +R H YA+KR++CS H     ++AS SYDMSVI+W      +RAR     +Q   +     HTEFV G+ ++      LASCA D ++C W
Sbjct:  226 PASILRGHTYAIKRIKCSPHSE--SMLASTSYDMSVIIW------DRAR-----EQDPLLMRMDHHTEFVLGVDWNMFIDGQLASCAWDDQVCVW 307          
BLAST of mRNA_H-elongata_contig171919.4428.1 vs. uniprot
Match: D7FIF0_ECTSI (Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIF0_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.030e-10
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 1
Query:  325 SPERARSSSGNQQGSR--VEICVGHTEFVAGLAFSFTDPRLLASCALDRRLCFW 480
            S  R     G  QGS   ++ CVGHTEFVAG+AFS  +PRL+A+CA DRRLCFW
Sbjct:  304 SANRIEQGQGQGQGSPRLLDRCVGHTEFVAGVAFSLFEPRLMATCAWDRRLCFW 357          
BLAST of mRNA_H-elongata_contig171919.4428.1 vs. uniprot
Match: UPI001C7A00FF (uncharacterized protein n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7A00FF)

HSP 1 Score: 65.1 bits (157), Expect = 2.220e-9
Identity = 58/186 (31.18%), Postives = 79/186 (42.47%), Query Frame = 1
Query:   34 HPVVATGCA-DGSVRTWDLRQPRCAPQRLGASTKQYRFSS----SSSSNCLLFTW-------------------WHSEPL---------GAIRQ----HRYAVKRVRCSTHPNPAGLVASASYDMSVILWNPYPSPERARSSSGNQQGSRVEICVGHTEFVAGLAFSFTDPRLLASCALDRRLCFW 480
            HP +   C+ DG+V+ +DLR P  A     + TK    ++    +S S  L   W                   W    +         GA       H YAVK+V+ S  P+   L+ASASYDM+  +WN  P    ++          V I  GHTEFVAG A+S  +   LASC  D RL  +
Sbjct:  168 HPDILASCSTDGTVKIFDLRAPAYA-SNTNSYTKPLSAAALTVPASGSEVLSLDWNKYKTFTIACGGVDKTIKVWDCRMIKMGETGLVGGACETTLLGHEYAVKKVQWS--PHHGDLLASASYDMTCRVWNTMPVAPVSQL---------VYIHDGHTEFVAGCAWSLYEEGFLASCGWDGRLALY 341          
BLAST of mRNA_H-elongata_contig171919.4428.1 vs. uniprot
Match: A0A813JQ23_POLGL (Peroxin-7 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JQ23_POLGL)

HSP 1 Score: 61.2 bits (147), Expect = 3.780e-9
Identity = 33/97 (34.02%), Postives = 47/97 (48.45%), Query Frame = 1
Query:  190 SEPLGAIRQHRYAVKRVRCSTHPNPAGLVASASYDMSVILWNPYPSPERARSSSGNQQGSRVEICVGHTEFVAGLAFSFTDPRLLASCALDRRLCFW 480
            S+PL  +  H+ AV+RV+C  HP+    + SASYDMS+ +W+                G        H+EFV G+  S  +  L+ S A DR  C W
Sbjct:   14 SQPLQILHGHQLAVRRVKC--HPHAENQLISASYDMSINMWD-------------MSMGQMTRHFDHHSEFVLGVDLSLFEENLVVSAAWDRTCCVW 95          
BLAST of mRNA_H-elongata_contig171919.4428.1 vs. uniprot
Match: A0A2A9PI93_9HYPO (Peroxin-7 n=1 Tax=Ophiocordyceps unilateralis TaxID=268505 RepID=A0A2A9PI93_9HYPO)

HSP 1 Score: 63.9 bits (154), Expect = 5.530e-9
Identity = 53/176 (30.11%), Postives = 75/176 (42.61%), Query Frame = 1
Query:   40 VVATGCADGSVRTWDLRQPRCAPQRLGASTKQYRFSSSSSSNCLLFTW-WHSE-----------------------PLGAIRQHRYAVKRVRCSTHPNPAGLVASASYDMSVILWNPYPSPERARSSSGNQQGSRVEICVG----HTEFVAGLAFS-FTDPRLLASCALDRRLCFW 480
            +V+   +DG +R +DLR P  A   L  +   +   SS  +  L   W  +S+                       PL  +R H YAV+R+  S  P+   ++ SASYDM+V LW      + A +SS   Q   +    G    HTEFV G+ +  F     LAS   D RL  W
Sbjct:  160 LVSAASSDGQLRVFDLRTPSSAKYHLAVAIPVHASPSSPPAELLTHDWNKYSDSVVAVAGVHRLISTFDVRYPAPAPLSIMRGHEYAVRRIAWS--PHAPDVLVSASYDMTVRLW------DDAAASSAQAQPPHLARQAGLMNRHTEFVTGVDWCLFGVGGWLASVGWDERLLLW 327          
BLAST of mRNA_H-elongata_contig171919.4428.1 vs. uniprot
Match: A0BZT1_PARTE (Peroxin-7 n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BZT1_PARTE)

HSP 1 Score: 63.2 bits (152), Expect = 9.760e-9
Identity = 45/167 (26.95%), Postives = 69/167 (41.32%), Query Frame = 1
Query:   19 WDKYKHPVVATGCADGSVRTWDLRQPRCA---------PQRLGASTKQYRFSSSSSSNCLLFTWWH----SEPLGAIRQHRYAVKRVRCSTHPNPAGLVASASYDMSVILWNPYPSPERARSSSGNQQGSRVEICVGHTEFVAGLAFSFTDPRLLASCALDRRLCFW 480
            W   +  + AT   DG++R WDL  P               L     +Y    ++SS       W       P+  +  HR+ V++V+ S  P+ A ++ SASYDMSV++WN                   ++    HTEFV GL FS    + + S + D +   W
Sbjct:  159 WHPIQQNMFATTGNDGAMRLWDLNSPSNKNIASIKAHMSDTLSCDFNKYEELIATSSADKTIKLWDLRNLKAPIQTLLGHRHPVRKVKFS--PHEAIILGSASYDMSVMIWN-----------IQEPSNPLIKNHPKHTEFVVGLDFSIHTEKQICSASWDGKAMIW 312          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171919.4428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU09_9PHAE2.900e-2250.00Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxI... [more]
A0A1J7JQA2_9PEZI2.460e-1331.29Peroxin-7 n=3 Tax=Coniochaeta TaxID=79808 RepID=A0... [more]
A0A2N1JCI6_9BASI6.740e-1230.63Peroxin-7 n=1 Tax=Malassezia vespertilionis TaxID=... [more]
A0A8E2AWA2_9APHY7.320e-1129.45Peroxin-7 n=1 Tax=Obba rivulosa TaxID=1052685 RepI... [more]
A0A8J4UR91_9MYCE8.160e-1140.00Peroxin-7 n=1 Tax=Polysphondylium violaceum TaxID=... [more]
D7FIF0_ECTSI1.030e-1059.26Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
UPI001C7A00FF2.220e-931.18uncharacterized protein n=1 Tax=Marasmius oreades ... [more]
A0A813JQ23_POLGL3.780e-934.02Peroxin-7 n=1 Tax=Polarella glacialis TaxID=89957 ... [more]
A0A2A9PI93_9HYPO5.530e-930.11Peroxin-7 n=1 Tax=Ophiocordyceps unilateralis TaxI... [more]
A0BZT1_PARTE9.760e-926.95Peroxin-7 n=1 Tax=Paramecium tetraurelia TaxID=588... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171919contigH-elongata_contig171919:265..1011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score83.2
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog40492.XP_007304436.1
Preferred namePEX7
KEGG koko:K13341
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
GOsGO:0000268,GO:0003674,GO:0005048,GO:0005053,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006605,GO:0006625,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016043,GO:0016558,GO:0016560,GO:0017038,GO:0031907,GO:0031974,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043574,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072662,GO:0072663
EggNOG free text desc.WD40 repeat-like protein
EggNOG OGs224XP@155619,38BPW@33154,3H2FU@355688,3NXHS@4751,3UYN9@5204,KOG0277@1,KOG0277@2759
COG Functional cat.U
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size489
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.9148479-CDS-H-elongata_contig171919:264..4001622930000.9148479-CDS-H-elongata_contig171919:264..400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171919 265..400 +
1691679240.9488664-CDS-H-elongata_contig171919:264..4001691679240.9488664-CDS-H-elongata_contig171919:264..400Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171919 265..400 +
1622930000.9300761-CDS-H-elongata_contig171919:658..10111622930000.9300761-CDS-H-elongata_contig171919:658..1011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171919 659..1011 +
1691679240.9599316-CDS-H-elongata_contig171919:658..10111691679240.9599316-CDS-H-elongata_contig171919:658..1011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171919 659..1011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171919.4428.1prot_H-elongata_contig171919.4428.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171919 265..1011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171919.4428.1

>prot_H-elongata_contig171919.4428.1 ID=prot_H-elongata_contig171919.4428.1|Name=mRNA_H-elongata_contig171919.4428.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
EVLAGDWDKYKHPVVATGCADGSVRTWDLRQPRCAPQRLGASTKQYRFSS
SSSSNCLLFTWWHSEPLGAIRQHRYAVKRVRCSTHPNPAGLVASASYDMS
VILWNPYPSPERARSSSGNQQGSRVEICVGHTEFVAGLAFSFTDPRLLAS
CALDRRLCFWMM*
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mRNA from alignment at H-elongata_contig171919:265..1011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171919.4428.1 ID=mRNA_H-elongata_contig171919.4428.1|Name=mRNA_H-elongata_contig171919.4428.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at H-elongata_contig171919:265..1011+ (Himanthalia elongata Himel1 dioecious)
GAGGTCCTCGCCGGAGACTGGGATAAGTACAAGCATCCAGTCGTGGCCAC CGGCTGCGCGGACGGGTCGGTGAGGACGTGGGACCTTCGCCAACCAAGGT GTGCCCCGCAACGGCTAGGAGCGAGTACAAAGCAATGTCGCCAGAGGTAT ACCGTCACTGTATACTGTTCACTGCCGGGCTTGGCGAGAATCAATGTATA CAAGGAGCGCGGGTGCCGGAATCGCGGTGTGATCATTTTCATATGGTGGG GCAGGCAATCCGTATGTCTAGAGCCTACGGGTCACTATTCAGTAATAAAG CCCCTAATTTCTCCTCTCCAGCAAAGAGCTGCGAAGGATACAGTTTGTTT TTGCTCTTCTCTAATCGAGTATGAAGTGTGTGCCGTCGAATCAGATCGAT TCTCCTCCTCCTCTTCTTCAAATTGCCTCCTTTTTACTTGGTGGCACAGC GAACCGCTGGGGGCGATTCGACAGCACCGTTACGCCGTAAAGCGCGTTCG CTGCTCCACTCACCCGAACCCCGCCGGGTTGGTGGCGTCGGCGTCGTACG ACATGAGCGTAATCCTGTGGAATCCCTACCCGAGCCCCGAGAGAGCTAGG AGCTCGTCGGGGAACCAGCAAGGGTCGAGGGTAGAGATATGTGTCGGGCA CACGGAGTTTGTCGCGGGGCTGGCGTTCTCTTTTACCGACCCACGTCTGC TAGCTTCATGTGCATTGGATCGCCGTTTGTGTTTTTGGATGATGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig171919:265..1011+

>mRNA_H-elongata_contig171919.4428.1 ID=mRNA_H-elongata_contig171919.4428.1|Name=mRNA_H-elongata_contig171919.4428.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig171919:265..1011+ (Himanthalia elongata Himel1 dioecious)
GAGGTCCTCGCCGGAGACTGGGATAAGTACAAGCATCCAGTCGTGGCCAC
CGGCTGCGCGGACGGGTCGGTGAGGACGTGGGACCTTCGCCAACCAAGGT
GTGCCCCGCAACGGCTAGGAGCGAGTACAAAGCAATGAGGTCCTCGCCGG
AGACTGGGATAAGTACAAGCATCCAGTCGTGGCCACCGGCTGCGCGGACG
GGTCGGTGAGGACGTGGGACCTTCGCCAACCAAGGTGTGCCCCGCAACGG
CTAGGAGCGAGTACAAAGCAATATCGATTCTCCTCCTCCTCTTCTTCAAA
TTGCCTCCTTTTTACTTGGTGGCACAGCGAACCGCTGGGGGCGATTCGAC
AGCACCGTTACGCCGTAAAGCGCGTTCGCTGCTCCACTCACCCGAACCCC
GCCGGGTTGGTGGCGTCGGCGTCGTACGACATGAGCGTAATCCTGTGGAA
TCCCTACCCGAGCCCCGAGAGAGCTAGGAGCTCGTCGGGGAACCAGCAAG
GGTCGAGGGTAGAGATATGTGTCGGGCACACGGAGTTTGTCGCGGGGCTG
GCGTTCTCTTTTACCGACCCACGTCTGCTAGCTTCATGTGCATTGGATCG
CCGTTTGTGTTTTTGGATGATGTAAATCGATTCTCCTCCTCCTCTTCTTC
AAATTGCCTCCTTTTTACTTGGTGGCACAGCGAACCGCTGGGGGCGATTC
GACAGCACCGTTACGCCGTAAAGCGCGTTCGCTGCTCCACTCACCCGAAC
CCCGCCGGGTTGGTGGCGTCGGCGTCGTACGACATGAGCGTAATCCTGTG
GAATCCCTACCCGAGCCCCGAGAGAGCTAGGAGCTCGTCGGGGAACCAGC
AAGGGTCGAGGGTAGAGATATGTGTCGGGCACACGGAGTTTGTCGCGGGG
CTGGCGTTCTCTTTTACCGACCCACGTCTGCTAGCTTCATGTGCATTGGA
TCGCCGTTTGTGTTTTTGGATGATGTAA
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