mRNA_H-elongata_contig171906.4427.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: A0A6H5JV32_9PHAE (Selenoprotein O n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV32_9PHAE) HSP 1 Score: 204 bits (518), Expect = 1.400e-59 Identity = 106/121 (87.60%), Postives = 111/121 (91.74%), Query Frame = 1
Query: 1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPEAAAAGLEGGSSARYLAM 363
+VLRSSIREFLCSEAMHFL IPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTR+APTFLRFGSFEIFKPRD RTGR GPS GNDALR+QML+YA RFFP AAAAG +G S ARYLAM
Sbjct: 241 KVLRSSIREFLCSEAMHFLGIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRLAPTFLRFGSFEIFKPRDPRTGRDGPSAGNDALRLQMLEYAIGRFFPGAAAAGPKG-SKARYLAM 360
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: A0A0S7K1U9_9TELE (Selenoprotein O (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7K1U9_9TELE) HSP 1 Score: 149 bits (377), Expect = 5.250e-43 Identity = 71/104 (68.27%), Postives = 84/104 (80.77%), Query Frame = 1
Query: 1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPE 312
+VLRSSIREFLCSEAM FL IPTTRA ++VTSD+KV RD++Y+GN E+ S+V R+APTFLRFGSFEIFKP DE TGR GPS G + +R QMLDY F+PE
Sbjct: 47 KVLRSSIREFLCSEAMFFLGIPTTRAGSVVTSDSKVVRDIYYSGNPCYEKCSVVLRIAPTFLRFGSFEIFKPADEFTGRQGPSYGREEIRGQMLDYVIEMFYPE 150
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: A0A836CN66_9STRA (Selenoprotein O n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN66_9STRA) HSP 1 Score: 156 bits (395), Expect = 1.810e-42 Identity = 84/122 (68.85%), Postives = 95/122 (77.87%), Query Frame = 1
Query: 1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPEAAAAGL-EGGSSARYLAM 363
+VLRSSIREFLCSEAMH+L IPTTRAA++VTSDT V+RD+FYTG+VI ERA+IV R+APTFLRFGSFEIFK D TGR GPS GN L +ML Y+ FFPEAAAA GG A L M
Sbjct: 144 KVLRSSIREFLCSEAMHYLGIPTTRAASMVTSDTLVQRDLFYTGDVINERATIVLRIAPTFLRFGSFEIFKGTDPTTGRRGPSEGNVDLLKKMLHYSLSTFFPEAAAAAAGPGGLPAGTLMM 265
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: A0A7S2V3H2_9STRA (Selenoprotein O n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3H2_9STRA) HSP 1 Score: 157 bits (396), Expect = 2.400e-42 Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 1
Query: 1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPEAAAA 324
+VLRSSIREFLCSEA HFL IPTTRA LVTS+TKV RDV+YTGN I E+ASIV R+AP+FLRFGSFEIFKP D TGR GPS+GN AL Q+LD+A ++FPE AAA
Sbjct: 201 KVLRSSIREFLCSEANHFLGIPTTRAGTLVTSNTKVVRDVYYTGNPILEKASIVLRIAPSFLRFGSFEIFKPSDALTGRKGPSVGNTALLHQLLDFAIAQYFPEVAAA 308
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: UPI001CF1ED27 (protein adenylyltransferase SelO, mitochondrial-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF1ED27) HSP 1 Score: 150 bits (380), Expect = 1.370e-41 Identity = 69/104 (66.35%), Postives = 83/104 (79.81%), Query Frame = 1
Query: 1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPE 312
+VLRSSIREFLCSEAMHFL +PTTRA + VTSD+K+ RD+FY GN I+E+ ++V R+APTF+RFGSFEIFKP D TGR GPS G + VQ+LDY FFPE
Sbjct: 195 KVLRSSIREFLCSEAMHFLGVPTTRAGSCVTSDSKIIRDIFYNGNAIREKCTVVLRIAPTFIRFGSFEIFKPVDSMTGRRGPSAGRTDIMVQLLDYTVNTFFPE 298
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: A0A2B4RRY1_STYPI (Selenoprotein O n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4RRY1_STYPI) HSP 1 Score: 152 bits (384), Expect = 8.710e-41 Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1
Query: 1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPEAAAAGLEGGSSARYLAM 363
+VLRSSIREFLCSEAMHFL IPTTRA + VTSDT++ RD+FY GN I+ER +I+ R+APTF+RFGSFEIFKP D TGR GPS G + +Q+LDY + FFP+ + G YLA
Sbjct: 156 KVLRSSIREFLCSEAMHFLGIPTTRAGSCVTSDTRITRDIFYDGNPIRERCTIILRIAPTFIRFGSFEIFKPTDPMTGRKGPSEGRTDILIQLLDYTVQTFFPQV----VTGDKEEAYLAF 272
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: A0A4Z2HSQ3_9TELE (Selenoprotein O n=2 Tax=Cottales TaxID=1490021 RepID=A0A4Z2HSQ3_9TELE) HSP 1 Score: 152 bits (384), Expect = 1.120e-40 Identity = 72/104 (69.23%), Postives = 83/104 (79.81%), Query Frame = 1
Query: 1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPE 312
+VLRSSIREFLCSE MHFL +PTTRA ++VTSDTKV RDV+YTGN ER S+V R+APTFLRFGSFEIFK DE TGR GPS G D +R QM+DY F+P+
Sbjct: 191 KVLRSSIREFLCSEVMHFLGVPTTRAGSVVTSDTKVVRDVYYTGNPRLERCSVVVRIAPTFLRFGSFEIFKRADEHTGRQGPSCGRDEIRGQMMDYVIEMFYPD 294
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: UPI00168CB0C0 (protein adenylyltransferase SelO, mitochondrial isoform X2 n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=UPI00168CB0C0) HSP 1 Score: 150 bits (380), Expect = 1.180e-40 Identity = 76/108 (70.37%), Postives = 85/108 (78.70%), Query Frame = 1
Query: 1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPEAAAA 324
+VLRSSIREFLCSEAM L IPTTRA A VTS + V RDVFY GN QE ++V RVAPTFLRFGSFEIFKP DERTGR+GPS+G + +RVQMLDY F+PE AA
Sbjct: 200 KVLRSSIREFLCSEAMFHLGIPTTRAGACVTSQSTVERDVFYDGNPKQEPCAVVLRVAPTFLRFGSFEIFKPADERTGRAGPSVGRNEIRVQMLDYVVGTFYPEIQAA 307
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: G3PJI5_GASAC (Selenoprotein O n=1 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3PJI5_GASAC) HSP 1 Score: 150 bits (379), Expect = 1.370e-40 Identity = 71/104 (68.27%), Postives = 82/104 (78.85%), Query Frame = 1
Query: 1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPE 312
+VLRSSIREFLCSE MHFL +PTTRAA +VTSDT+V RDV+Y+GN ER S V R+APTFLRFGSFEIFK DE TGR GPS G D +R QM+DY F+P+
Sbjct: 148 KVLRSSIREFLCSEVMHFLGVPTTRAACVVTSDTRVVRDVYYSGNPRNERCSAVVRIAPTFLRFGSFEIFKQADEHTGRQGPSYGRDEIRGQMMDYVIEMFYPD 251
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Match: G3PJH3_GASAC (Selenoprotein O n=1 Tax=Gasterosteus aculeatus TaxID=69293 RepID=G3PJH3_GASAC) HSP 1 Score: 150 bits (379), Expect = 1.850e-40 Identity = 71/104 (68.27%), Postives = 82/104 (78.85%), Query Frame = 1
Query: 1 QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERASIVTRVAPTFLRFGSFEIFKPRDERTGRSGPSMGNDALRVQMLDYAARRFFPE 312
+VLRSSIREFLCSE MHFL +PTTRAA +VTSDT+V RDV+Y+GN ER S V R+APTFLRFGSFEIFK DE TGR GPS G D +R QM+DY F+P+
Sbjct: 160 KVLRSSIREFLCSEVMHFLGVPTTRAACVVTSDTRVVRDVYYSGNPRNERCSAVVRIAPTFLRFGSFEIFKQADEHTGRQGPSYGRDEIRGQMMDYVIEMFYPD 263 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171906.4427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig171906.4427.1 >prot_H-elongata_contig171906.4427.1 ID=prot_H-elongata_contig171906.4427.1|Name=mRNA_H-elongata_contig171906.4427.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp QVLRSSIREFLCSEAMHFLNIPTTRAAALVTSDTKVRRDVFYTGNVIQERback to top mRNA from alignment at H-elongata_contig171906:280..1099+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig171906.4427.1 ID=mRNA_H-elongata_contig171906.4427.1|Name=mRNA_H-elongata_contig171906.4427.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=820bp|location=Sequence derived from alignment at H-elongata_contig171906:280..1099+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig171906:280..1099+ >mRNA_H-elongata_contig171906.4427.1 ID=mRNA_H-elongata_contig171906.4427.1|Name=mRNA_H-elongata_contig171906.4427.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig171906:280..1099+ (Himanthalia elongata Himel1 dioecious)back to top |