prot_H-elongata_contig171837.4426.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig171837.4426.1
Unique Nameprot_H-elongata_contig171837.4426.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length48
Homology
BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: A0A836CL42_9STRA (Ribosomal protein L17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL42_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.870e-21
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0
Query:    1 MYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 47
            MYDK LVHALFE   ERYG+RNGGYCRVL TMPR+GDNAKMA+IELV
Sbjct:  119 MYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQGDNAKMAIIELV 165          
BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: Q15GA8_RHDSA (Chloroplast 50S ribosomal protein 17 (Fragment) n=1 Tax=Rhodomonas salina TaxID=52970 RepID=Q15GA8_RHDSA)

HSP 1 Score: 85.5 bits (210), Expect = 1.060e-20
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0
Query:    1 MYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 47
            MYDK+LVHALFE   ERY +R GGYCRVL TMPRKGDNAKM VIELV
Sbjct:   42 MYDKQLVHALFEQAPERYAEREGGYCRVLRTMPRKGDNAKMGVIELV 88          
BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: A0A7S0CE24_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CE24_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.600e-20
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0
Query:    1 MYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 47
            +YDK LVHALF++  +RYGDR GGYCRVL TMPR+GDNAKMAVIELV
Sbjct:  123 VYDKNLVHALFDAAPDRYGDREGGYCRVLRTMPRQGDNAKMAVIELV 169          
BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: Q5K251_GUITH (50S ribosomal protein L17 n=2 Tax=Guillardia theta TaxID=55529 RepID=Q5K251_GUITH)

HSP 1 Score: 85.1 bits (209), Expect = 8.920e-20
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0
Query:    1 MYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 47
            MYDK+LVHALFE   ERY +RNGGYCRVL T+PRKGDN+KM +IELV
Sbjct:  110 MYDKQLVHALFEQAPERYSERNGGYCRVLQTLPRKGDNSKMGIIELV 156          
BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: A0A1X6PCU2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PCU2_PORUM)

HSP 1 Score: 85.5 bits (210), Expect = 1.010e-19
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 0
Query:    1 MYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 47
            ++DK LVH+LFE+  ERYG+RNGGYCRVL TMPR+GDNAKMA+IELV
Sbjct:  130 IFDKPLVHSLFEAAPERYGERNGGYCRVLRTMPRRGDNAKMAIIELV 176          
BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: A0A7S1C082_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C082_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.130e-19
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0
Query:    1 MYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 47
            MYDK+LVHALFE+  ERY DRNGGY RVL TMPR+GDNAKMAVIELV
Sbjct:  120 MYDKQLVHALFEAAPERYEDRNGGYTRVLRTMPRQGDNAKMAVIELV 166          
BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: M2W5B3_GALSU (50S ribosomal protein L17 (Plastid) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W5B3_GALSU)

HSP 1 Score: 85.1 bits (209), Expect = 1.600e-19
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0
Query:    1 MYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 47
            +YDK+LVHALFE   ERY DRNGGY R+LHTMPRKGDNA+M VIELV
Sbjct:  135 IYDKQLVHALFEQAPERYADRNGGYTRILHTMPRKGDNAEMGVIELV 181          
BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: D7G590_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G590_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.600e-19
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0
Query:    1 MYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 47
            +YDK+LVHALFESGAERYG+R GGY R++ T PRKGDNAKMA+IELV
Sbjct:  135 IYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 181          
BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: B8CAZ9_THAPS (RK17, ribosomal protein 17 50S large ribosomal subunit, chloroplast n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAZ9_THAPS)

HSP 1 Score: 83.2 bits (204), Expect = 1.840e-19
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0
Query:    1 MYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 47
            +YDK LVH+LFE+  ERYG+RNGGY RVL TMPR+GDNAKMAVIELV
Sbjct:   70 VYDKDLVHSLFEAAPERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 116          
BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: A0A7S2CVF2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVF2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.780e-19
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0
Query:    1 MYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 47
            +YDK+LVHALFE+  ERY DR GGYCRVL TMPR+GDNAKM +IELV
Sbjct:  114 IYDKELVHALFENAPERYADREGGYCRVLRTMPRQGDNAKMGIIELV 160          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CL42_9STRA4.870e-2182.98Ribosomal protein L17 n=1 Tax=Tribonema minus TaxI... [more]
Q15GA8_RHDSA1.060e-2080.85Chloroplast 50S ribosomal protein 17 (Fragment) n=... [more]
A0A7S0CE24_9STRA8.600e-2078.72Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
Q5K251_GUITH8.920e-2076.6050S ribosomal protein L17 n=2 Tax=Guillardia theta... [more]
A0A1X6PCU2_PORUM1.010e-1976.60Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S1C082_9STRA1.130e-1982.98Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
M2W5B3_GALSU1.600e-1978.7250S ribosomal protein L17 (Plastid) n=1 Tax=Galdie... [more]
D7G590_ECTSI1.600e-1978.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
B8CAZ9_THAPS1.840e-1978.72RK17, ribosomal protein 17 50S large ribosomal sub... [more]
A0A7S2CVF2_9STRA2.780e-1976.60Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036373Ribosomal protein L17 superfamilyGENE3D3.90.1030.10coord: 1..47
e-value: 4.4E-16
score: 61.3
IPR036373Ribosomal protein L17 superfamilySUPERFAMILY64263Prokaryotic ribosomal protein L17coord: 1..47
IPR000456Ribosomal protein L17PFAMPF01196Ribosomal_L17coord: 6..47
e-value: 9.3E-14
score: 52.1
IPR000456Ribosomal protein L17PANTHERPTHR14413RIBOSOMAL PROTEIN L17coord: 1..47
NoneNo IPR availablePANTHERPTHR14413:SF1850S RIBOSOMAL PROTEIN L17, CHLOROPLASTICcoord: 1..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171837contigH-elongata_contig171837:1099..1242 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171837.4426.1mRNA_H-elongata_contig171837.4426.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig171837 1099..1272 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig171837.4426.1 ID=prot_H-elongata_contig171837.4426.1|Name=mRNA_H-elongata_contig171837.4426.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036373Ribosomal_L17_sf
IPR000456Ribosomal_L17