mRNA_H-elongata_contig171837.4426.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171837.4426.1
Unique NamemRNA_H-elongata_contig171837.4426.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: A0A836CL42_9STRA (Ribosomal protein L17 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL42_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.040e-24
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 LPSTPQALGYMYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 171
            L S  QA+G+MYDK LVHALFE   ERYG+RNGGYCRVL TMPR+GDNAKMA+IELV
Sbjct:  109 LHSRRQAMGFMYDKALVHALFEQAPERYGERNGGYCRVLKTMPRQGDNAKMAIIELV 165
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BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: A0A1X6PCU2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PCU2_PORUM)

HSP 1 Score: 95.9 bits (237), Expect = 1.330e-23
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 LPSTPQALGYMYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 171
            L S  QALGY++DK LVH+LFE+  ERYG+RNGGYCRVL TMPR+GDNAKMA+IELV
Sbjct:  120 LHSRRQALGYIFDKPLVHSLFEAAPERYGERNGGYCRVLRTMPRRGDNAKMAIIELV 176
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BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: Q15GA8_RHDSA (Chloroplast 50S ribosomal protein 17 (Fragment) n=1 Tax=Rhodomonas salina TaxID=52970 RepID=Q15GA8_RHDSA)

HSP 1 Score: 92.0 bits (227), Expect = 4.160e-23
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 LPSTPQALGYMYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 171
            L S  +A+G+MYDK+LVHALFE   ERY +R GGYCRVL TMPRKGDNAKM VIELV
Sbjct:   32 LESRRRAIGWMYDKQLVHALFEQAPERYAEREGGYCRVLRTMPRKGDNAKMGVIELV 88
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BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: UPI00145F16A3 (50S ribosomal protein L17 n=1 Tax=Brasilonema sp. UFV-L1 TaxID=2234130 RepID=UPI00145F16A3)

HSP 1 Score: 92.4 bits (228), Expect = 6.360e-23
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 LPSTPQALGYMYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 171
            LP+  QALGY+YDK+LVHALFE    RYG+R GGY R+LHT+PR+GDN+KMA+IELV
Sbjct:   60 LPARRQALGYIYDKQLVHALFEQAPTRYGNRQGGYTRILHTIPRRGDNSKMAIIELV 116
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BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: D7G590_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G590_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.210e-22
Identity = 41/52 (78.85%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:   16 QALGYMYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 171
            QA+GY+YDK+LVHALFESGAERYG+R GGY R++ T PRKGDNAKMA+IELV
Sbjct:  130 QAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 181
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BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: A0A6P0QDW7_9CYAN (50S ribosomal protein L17 n=3 Tax=Oscillatoriales TaxID=1150 RepID=A0A6P0QDW7_9CYAN)

HSP 1 Score: 91.7 bits (226), Expect = 1.280e-22
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 LPSTPQALGYMYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 171
            L +  QALGY+YDK+LVHALFE   ERYGDRNGGY RVL T+PR+GDNA+MA+IELV
Sbjct:   60 LSARRQALGYIYDKQLVHALFEGVQERYGDRNGGYTRVLRTVPRRGDNAEMAIIELV 116
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BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: UPI001686FD79 (50S ribosomal protein L17 n=1 Tax=unclassified Microcoleus TaxID=2642155 RepID=UPI001686FD79)

HSP 1 Score: 90.9 bits (224), Expect = 2.580e-22
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 LPSTPQALGYMYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 171
            L +  QALGY+YDK+LVHALFE  A RYG+RNGGY RVL TMPR+GDNA+MA+IELV
Sbjct:   60 LSARRQALGYIYDKQLVHALFEQVATRYGNRNGGYTRVLRTMPRRGDNAEMAIIELV 116
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BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: Q5K251_GUITH (50S ribosomal protein L17 n=2 Tax=Guillardia theta TaxID=55529 RepID=Q5K251_GUITH)

HSP 1 Score: 92.0 bits (227), Expect = 2.610e-22
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 LPSTPQALGYMYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 171
            L +  QA+G+MYDK+LVHALFE   ERY +RNGGYCRVL T+PRKGDN+KM +IELV
Sbjct:  100 LSARRQAMGWMYDKQLVHALFEQAPERYSERNGGYCRVLQTLPRKGDNSKMGIIELV 156
[Close]
BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: B8CAZ9_THAPS (RK17, ribosomal protein 17 50S large ribosomal subunit, chloroplast n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAZ9_THAPS)

HSP 1 Score: 90.5 bits (223), Expect = 3.660e-22
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:   16 QALGYMYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 171
            QALG++YDK LVH+LFE+  ERYG+RNGGY RVL TMPR+GDNAKMAVIELV
Sbjct:   65 QALGWVYDKDLVHSLFEAAPERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 116
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BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Match: K9WQ55_9CYAN (50S ribosomal protein L17 n=6 Tax=Cyanobacteria TaxID=1117 RepID=K9WQ55_9CYAN)

HSP 1 Score: 90.5 bits (223), Expect = 3.660e-22
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 LPSTPQALGYMYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV 171
            L S  QALGY+YDK+LVH+LFE   +RYGDRNGGY RVL T+PR+GDNA+MA+IELV
Sbjct:   60 LASRRQALGYIYDKQLVHSLFEGVKDRYGDRNGGYTRVLRTVPRRGDNAEMAIIELV 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171837.4426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CL42_9STRA5.040e-2477.19Ribosomal protein L17 n=1 Tax=Tribonema minus TaxI... [more]
A0A1X6PCU2_PORUM1.330e-2375.44Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
Q15GA8_RHDSA4.160e-2373.68Chloroplast 50S ribosomal protein 17 (Fragment) n=... [more]
UPI00145F16A36.360e-2370.1850S ribosomal protein L17 n=1 Tax=Brasilonema sp. ... [more]
D7G590_ECTSI1.210e-2278.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6P0QDW7_9CYAN1.280e-2273.6850S ribosomal protein L17 n=3 Tax=Oscillatoriales ... [more]
UPI001686FD792.580e-2273.6850S ribosomal protein L17 n=1 Tax=unclassified Mic... [more]
Q5K251_GUITH2.610e-2270.1850S ribosomal protein L17 n=2 Tax=Guillardia theta... [more]
B8CAZ9_THAPS3.660e-2278.85RK17, ribosomal protein 17 50S large ribosomal sub... [more]
K9WQ55_9CYAN3.660e-2271.9350S ribosomal protein L17 n=6 Tax=Cyanobacteria Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171837contigH-elongata_contig171837:1099..1272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog130081.XP_005707481.1
Preferred namePRPL17
KEGG koko:K02879
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0015934,GO:0022625,GO:0022626,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0203@1,KOG3280@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRibosomal protein L17
Ec32 orthologEc-14_006650.1
Exons1
Model size174
Cds size144
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.7484062-CDS-H-elongata_contig171837:1098..12421622930000.7484062-CDS-H-elongata_contig171837:1098..1242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171837 1099..1242 -
1691679240.9066737-CDS-H-elongata_contig171837:1098..12421691679240.9066737-CDS-H-elongata_contig171837:1098..1242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171837 1099..1242 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.7663045-UTR-H-elongata_contig171837:1242..12721622930000.7663045-UTR-H-elongata_contig171837:1242..1272Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig171837 1243..1272 -
1691679240.919174-UTR-H-elongata_contig171837:1242..12721691679240.919174-UTR-H-elongata_contig171837:1242..1272Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig171837 1243..1272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171837.4426.1prot_H-elongata_contig171837.4426.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171837 1099..1242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171837.4426.1

>prot_H-elongata_contig171837.4426.1 ID=prot_H-elongata_contig171837.4426.1|Name=mRNA_H-elongata_contig171837.4426.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MYDKKLVHALFESGAERYGDRNGGYCRVLHTMPRKGDNAKMAVIELV*
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mRNA from alignment at H-elongata_contig171837:1099..1272-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171837.4426.1 ID=mRNA_H-elongata_contig171837.4426.1|Name=mRNA_H-elongata_contig171837.4426.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig171837:1099..1272- (Himanthalia elongata Himel1 dioecious)
CTGCCTTCCACACCCCAGGCGCTGGGATATATGTACGACAAGAAGCTGGT
GCACGCGCTCTTCGAGTCTGGCGCAGAACGGTATGGCGACCGCAACGGTG
GTTACTGCCGCGTGTTGCACACCATGCCAAGGAAGGGAGACAACGCGAAG
ATGGCAGTGATCGAGCTTGTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig171837:1099..1272-

>mRNA_H-elongata_contig171837.4426.1 ID=mRNA_H-elongata_contig171837.4426.1|Name=mRNA_H-elongata_contig171837.4426.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig171837:1099..1272- (Himanthalia elongata Himel1 dioecious)
ATGTACGACAAGAAGCTGGTGCACGCGCTCTTCGAGTCTGGCGCAGAACG
GTATGGCGACCGCAACGGTGGTTACTGCCGCGTGTTGCACACCATGCCAA
GGAAGGGAGACAACGCGAAGATGGCAGTGATCGAGCTTGTATAAATGTAC
GACAAGAAGCTGGTGCACGCGCTCTTCGAGTCTGGCGCAGAACGGTATGG
CGACCGCAACGGTGGTTACTGCCGCGTGTTGCACACCATGCCAAGGAAGG
GAGACAACGCGAAGATGGCAGTGATCGAGCTTGTATAA
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