mRNA_H-elongata_contig1718.4423.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1718.4423.1
Unique NamemRNA_H-elongata_contig1718.4423.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1718.4423.1 vs. uniprot
Match: D7G0X4_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X4_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.840e-31
Identity = 60/108 (55.56%), Postives = 77/108 (71.30%), Query Frame = 1
Query:   85 LDRRS---DIYPGMWDVSVGGHFSAGDTSLETAVKETGEELGIECDDQSLTFVSLVLNTPSTRSFQT---MCTLFQDIYLLHYDGAVNELKYAPSEVEEVKLVPVGEL 390
            L +RS   D +PGMWDVSVGGHF+AG+ SLETA+KET EELG+ CD+ SL FV  V  T    +      +C  ++DIYLL +DG V +LK++PSEVE+VKLVP+  L
Sbjct:   38 LQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETDEELGLSCDESSLRFVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQAL 145          
BLAST of mRNA_H-elongata_contig1718.4423.1 vs. uniprot
Match: A0A835YMT5_9STRA (NUDIX hydrolase domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMT5_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.520e-22
Identity = 49/109 (44.95%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   85 LDRRS---DIYPGMWDVSVGGHFSAGDTSLETAVKETGEELGIECDDQSLTFVSLVLNTP---STRSFQTMCTLFQDIYLLHYDGAVNELKYAPSEVEEVKLVPVGELE 393
            + RRS   D YPGMWDVSVGGH +AGD SL TA KET EELGI  +D  L F+  +  +    + R     C  ++D+Y+L Y+G + E+ ++  EVEEV+  P  ++E
Sbjct:   20 MQRRSKFKDTYPGMWDVSVGGHMTAGDDSLLTAKKETAEELGINFNDTDLEFLFTIATSAQGSTERHGNFNCNEYKDVYMLRYNGGLAEIHFSEGEVEEVRWEPYDQVE 128          
BLAST of mRNA_H-elongata_contig1718.4423.1 vs. uniprot
Match: A0A7S0NEA1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NEA1_9CRYP)

HSP 1 Score: 89.7 bits (221), Expect = 2.960e-19
Identity = 41/97 (42.27%), Postives = 66/97 (68.04%), Query Frame = 1
Query:  100 DIYPGMWDVSVGGHFSAGDTSLETAVKETGEELGIECDDQSLTFVSLVL-----NTPSTRSFQTMCTLFQDIYLLHYDGAVNELKYAPSEVEEVKLV 375
            D +PG WDVS+ GH S+GD+ +ETA+KE  EELG++ +++ L ++  +      ++P T  F  +C  ++DI+LL YDG++ +LK+AP EV+ V  V
Sbjct:  118 DTFPGKWDVSIAGHVSSGDSVIETAMKEAKEELGLDVEEEQLEYLGTIATSMRGSSPITGDF--LCNEYKDIFLLKYDGSLEDLKFAPEEVQAVSRV 212          
BLAST of mRNA_H-elongata_contig1718.4423.1 vs. uniprot
Match: L1JKA1_GUITC (Nudix hydrolase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JKA1_GUITC)

HSP 1 Score: 87.0 bits (214), Expect = 3.090e-18
Identity = 46/115 (40.00%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   70 WPYPG-----LDRRS---DIYPGMWDVSVGGHFSAGDTSLETAVKETGEELGIECDDQSLTFV-----SLVLNTPSTRSFQTMCTLFQDIYLLHYDGAVNELKYAPSEVEEVKLV 375
            W Y G     + +RS   D +PG WDVS+ GH S+GD+ +ETA+KE+ EELG++   + L ++     S+  ++P T  F  +C  ++DI+LL Y+G +++LK+AP EV+ V  V
Sbjct:   99 WLYDGQGNLIIQQRSEGKDTFPGKWDVSIAGHVSSGDSVIETAMKESKEELGLDIKKEELEYLGTIATSMAGSSPITGDF--LCNEYKDIFLLKYEGHLDDLKFAPEEVQAVSRV 211          
BLAST of mRNA_H-elongata_contig1718.4423.1 vs. uniprot
Match: A0A7S0QHM2_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHM2_9CRYP)

HSP 1 Score: 85.9 bits (211), Expect = 1.210e-17
Identity = 53/131 (40.46%), Postives = 68/131 (51.91%), Query Frame = 1
Query:   46 HVTGFHPR----WPYPG-----LDRRSD---IYPGMWDVSVGGHFSAGDTSLETAVKETGEELGIECDDQSLTFVSLVLNT---PSTRSFQTMCTLFQDIYLLHYDGAVNELKYAPSEVEEVKLVPVGELE 393
            H TG   R    W Y       L +RSD    +P  WDVSVGGH SAGDT +E A++ET EELG++  +  L FV+ V  T    S +     C  ++D++L  YDG    L YAP EV  V      E+E
Sbjct:  108 HATGTWHRAVHIWLYNSKGQILLQKRSDEKDTFPSKWDVSVGGHLSAGDTVVEAALRETEEELGLKIGEGDLAFVATVATTVAGSSAKQGAFTCNEYKDLFLARYDGPAEALVYAPDEVAGVAWRDADEVE 238          
BLAST of mRNA_H-elongata_contig1718.4423.1 vs. uniprot
Match: A0A1G2M3F6_9BACT (Nudix hydrolase domain-containing protein n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_01_FULL_46_22b TaxID=1802301 RepID=A0A1G2M3F6_9BACT)

HSP 1 Score: 77.0 bits (188), Expect = 4.940e-15
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   94 RSDIYPGMWDVSVGGHFSAGDTSLETAVKETGEELGIECDDQSLTFVSLVLNTPSTRSFQTMCTLFQDIYLLHYDGAVNELKYAPSEVEEVKLVPVGE 387
            + D   GMWD+SVGGH SAG TS+E AV+E  EE+GI  +   LTF+          + +     FQD+YL+  D  V++L     EV+EV+ + + E
Sbjct:   53 KKDRGGGMWDISVGGHISAGQTSIEAAVREVSEEIGITIEPSELTFLFGTSTDAELSNRKNQAKHFQDVYLVKKDLDVSKLVLQKEEVDEVRYISIEE 150          
BLAST of mRNA_H-elongata_contig1718.4423.1 vs. uniprot
Match: UPI000248F8F3 (NUDIX domain-containing protein n=1 Tax=Aquimarina agarivorans TaxID=980584 RepID=UPI000248F8F3)

HSP 1 Score: 75.1 bits (183), Expect = 3.010e-14
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  100 DIYPGMWDVSVGGHFSAGDTSLETAVKETGEELGIECDDQSLTFVSLVLNTPSTRSFQTMC-TLFQDIYLLHYDGAVNELKYAPSEVEEVKLVPVGELE 393
            D YP +WD+SV GH SAGDT    AV+E  EE+G++  ++ L F+  +    S R   T+    F  +Y+L +   +NELK    EV  VKL+ + +LE
Sbjct:   56 DTYPNLWDISVAGHLSAGDTPSTAAVREIQEEIGVKISEEKLFFLKTIRK--SNRISNTIIDNEFNHLYVLEFAVNINELKLQTEEVTAVKLIDINDLE 152          
BLAST of mRNA_H-elongata_contig1718.4423.1 vs. uniprot
Match: UPI001E3585F4 (NUDIX domain-containing protein n=1 Tax=Lacrimispora sp. NSJ-141 TaxID=2897778 RepID=UPI001E3585F4)

HSP 1 Score: 72.0 bits (175), Expect = 5.020e-13
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   85 LDRRS---DIYPGMWDVSVGGHFSAGDTSLETAVKETGEELGIECDDQSLTFVSLVLNTPSTRSFQTMCTL---FQDIYLLHYDGAVNELKYAPSEVEEVK 369
            L RRS   D YPG+WDV+  GH SAGD  LETAV+ET EELGI  +   L F+   L + S+  +Q +  +   F  ++L+  D  ++  +    EVEEV+
Sbjct:   54 LQRRSEEKDSYPGLWDVAAAGHVSAGDGYLETAVRETKEELGISLESGELQFL-FCLKSESSWEYQGISYIDREFHYVFLVEKDAGLSGFRLQKEEVEEVR 153          
BLAST of mRNA_H-elongata_contig1718.4423.1 vs. uniprot
Match: A0A1F6EN17_9BACT (Nudix hydrolase domain-containing protein n=1 Tax=Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_01_FULL_50_24 TaxID=1798507 RepID=A0A1F6EN17_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 1.710e-12
Identity = 38/105 (36.19%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   85 LDRRSD---IYPGMWDVSVGGHFSAGDTSLETAVKETGEELGIECDDQSLTFVSLVLNTPSTRSFQTMCTL-FQDIYLLHYDGAVNELKYAPSEVEEVKLVPVGE 387
            L +RS     +P  WD+SV GH S+G TS+E A +ET EE+G+   D++  ++  V       +  T     FQD++L+H D ++ +L   P EVEEV+ + + E
Sbjct:   48 LQKRSKNKIAHPSCWDISVAGHASSGQTSIEAAKRETEEEIGLTLLDEAYEYLFTVRRVREVINKGTYVNNEFQDVFLVHSDISIEDLVLPPDEVEEVRWLDISE 152          
BLAST of mRNA_H-elongata_contig1718.4423.1 vs. uniprot
Match: A0A4Q1ISZ4_9FLAO (NUDIX domain-containing protein n=1 Tax=Lutibacter sp. HS1-25 TaxID=2485000 RepID=A0A4Q1ISZ4_9FLAO)

HSP 1 Score: 69.3 bits (168), Expect = 4.550e-12
Identity = 33/97 (34.02%), Postives = 52/97 (53.61%), Query Frame = 1
Query:  100 DIYPGMWDVSVGGHFSAGDTSLETAVKETGEELGIECDDQSLTFVSLVLNTPSTRSFQTMCTLFQDIYLLHYDGAVNELKYAPSEVEEVKLVPVGEL 390
            D +PG+WD+SV GH SAG+  +++A++E  EE+GI    + L ++        T     +      IY+   +  +  LK    EV EVKL+P+ EL
Sbjct:   55 DTFPGLWDISVAGHISAGELPIDSAIREVSEEVGISIQQKQLHYIG-TSTKKVTHKIDLIDNELHHIYICSINFNIETLKIQQEEVAEVKLIPLNEL 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1718.4423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0X4_ECTSI2.840e-3155.56Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A835YMT5_9STRA5.520e-2244.95NUDIX hydrolase domain-like protein n=1 Tax=Tribon... [more]
A0A7S0NEA1_9CRYP2.960e-1942.27Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1JKA1_GUITC3.090e-1840.00Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S0QHM2_9CRYP1.210e-1740.46Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A1G2M3F6_9BACT4.940e-1539.80Nudix hydrolase domain-containing protein n=1 Tax=... [more]
UPI000248F8F33.010e-1439.39NUDIX domain-containing protein n=1 Tax=Aquimarina... [more]
UPI001E3585F45.020e-1341.58NUDIX domain-containing protein n=1 Tax=Lacrimispo... [more]
A0A1F6EN17_9BACT1.710e-1236.19Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A4Q1ISZ4_9FLAO4.550e-1234.02NUDIX domain-containing protein n=1 Tax=Lutibacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1718contigH-elongata_contig1718:1953..2857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.0
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog296587.XP_002505779.1
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0016787,GO:0019538,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.NUDIX domain
EggNOG OGs2QT89@2759,34MH7@3041,37JK2@33090,COG0494@1
COG Functional cat.L
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNUDIX hydrolase domain
Ec32 orthologEc-23_001950.1
Exons2
Model size393
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1718.4423.1prot_H-elongata_contig1718.4423.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1718 1953..2845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.4683204-CDS-H-elongata_contig1718:1952..21101622930000.4683204-CDS-H-elongata_contig1718:1952..2110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1718 1953..2110 -
1691679240.8372598-CDS-H-elongata_contig1718:1952..21101691679240.8372598-CDS-H-elongata_contig1718:1952..2110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1718 1953..2110 -
1622930000.4833164-CDS-H-elongata_contig1718:2622..28451622930000.4833164-CDS-H-elongata_contig1718:2622..2845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1718 2623..2845 -
1691679240.8471513-CDS-H-elongata_contig1718:2622..28451691679240.8471513-CDS-H-elongata_contig1718:2622..2845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1718 2623..2845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.5024605-UTR-H-elongata_contig1718:2845..28571622930000.5024605-UTR-H-elongata_contig1718:2845..2857Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1718 2846..2857 -
1691679240.8547971-UTR-H-elongata_contig1718:2845..28571691679240.8547971-UTR-H-elongata_contig1718:2845..2857Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1718 2846..2857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1718.4423.1

>prot_H-elongata_contig1718.4423.1 ID=prot_H-elongata_contig1718.4423.1|Name=mRNA_H-elongata_contig1718.4423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MSQNKCCGLHSHVTGFHPRWPYPGLDRRSDIYPGMWDVSVGGHFSAGDTS
LETAVKETGEELGIECDDQSLTFVSLVLNTPSTRSFQTMCTLFQDIYLLH
YDGAVNELKYAPSEVEEVKLVPVGELE
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mRNA from alignment at H-elongata_contig1718:1953..2857-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1718.4423.1 ID=mRNA_H-elongata_contig1718.4423.1|Name=mRNA_H-elongata_contig1718.4423.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=905bp|location=Sequence derived from alignment at H-elongata_contig1718:1953..2857- (Himanthalia elongata Himel1 dioecious)
ACTCGGTCGACCATGTCACAGAATAAATGTTGTGGTTTACACTCGCATGT AACCGGTTTCCATCCGAGATGGCCATATCCCGGTCTTGATCGTCGATCAG ACATATATCCAGGCATGTGGGACGTAAGCGTGGGTGGACACTTCTCCGCC GGAGACACCAGCCTTGAGACGGCCGTCAAGGAAACTGGGGAGGAGCTGGG AATCGAATGCGACGACCAAAGCCTCACGTTCGTATGTACGGTGGCGACTT CCGTTTCTGGAAGCGCACCTGACTTCGGTGACTTTGTTTGCAACGAATTC AAGGTGTGCCCGCTTGGCGTGGCGCAGCAAGCGCTGAGGTTTTCGACCAT CTCTTACGTTGCCTACCCATTTTTCTCTTCCGCCGTGTCGTGATACGTTG CTGCTTTATCCGTGCTCGTGATACGAGTTAACGTCCCATTTATTGCTTGA CGTGGTGAAGGTTTTCAGGAGTCGTAGAGCAAGTCCCCGGTACGGTAGTA TTTTCGCATTATTTATGTTCAGTTCAGTGGCCGAGTCTAGGGCTACTCTA CGACTACTCTACGTCGGAACTCCTTGTTCGCTAGCCCGACCTACTACTGA TAGGTTGACGCTGGCTGCGGTACATACAGCAACACAACCAAACCCGGCGA TAGTTGGTCCCCTGGATTACACCTCTCAAGGTGCTAAGAAGGCGTGGATG TTCGAAGGGTTTGAATGAGTTCATATATTTAAAAAGGAAAATGGCAGCTC TCGTTCTCAACACCCCCTCCACGCGAAGCTTCCAAACCATGTGCACTCTT TTTCAGGACATATATCTGCTGCACTACGACGGCGCTGTGAATGAGCTGAA GTACGCTCCCAGCGAGGTAGAGGAGGTGAAACTAGTCCCTGTCGGGGAGC TGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig1718:1953..2857-

>mRNA_H-elongata_contig1718.4423.1 ID=mRNA_H-elongata_contig1718.4423.1|Name=mRNA_H-elongata_contig1718.4423.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig1718:1953..2857- (Himanthalia elongata Himel1 dioecious)
ATGTCACAGAATAAATGTTGTGGTTTACACTCGCATGTAACCGGTTTCCA
TCCGAGATGGCCATATCCCGGTCTTGATCGTCGATCAGACATATATCCAG
GCATGTGGGACGTAAGCGTGGGTGGACACTTCTCCGCCGGAGACACCAGC
CTTGAGACGGCCGTCAAGGAAACTGGGGAGGAGCTGGGAATCGAATGCGA
CGACCAAAGCCTCACGTTCGTATATGTCACAGAATAAATGTTGTGGTTTA
CACTCGCATGTAACCGGTTTCCATCCGAGATGGCCATATCCCGGTCTTGA
TCGTCGATCAGACATATATCCAGGCATGTGGGACGTAAGCGTGGGTGGAC
ACTTCTCCGCCGGAGACACCAGCCTTGAGACGGCCGTCAAGGAAACTGGG
GAGGAGCTGGGAATCGAATGCGACGACCAAAGCCTCACGTTCGTATCTCT
CGTTCTCAACACCCCCTCCACGCGAAGCTTCCAAACCATGTGCACTCTTT
TTCAGGACATATATCTGCTGCACTACGACGGCGCTGTGAATGAGCTGAAG
TACGCTCCCAGCGAGGTAGAGGAGGTGAAACTAGTCCCTGTCGGGGAGCT
GGAGCTCTCGTTCTCAACACCCCCTCCACGCGAAGCTTCCAAACCATGTG
CACTCTTTTTCAGGACATATATCTGCTGCACTACGACGGCGCTGTGAATG
AGCTGAAGTACGCTCCCAGCGAGGTAGAGGAGGTGAAACTAGTCCCTGTC
GGGGAGCTGGAG
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