mRNA_H-elongata_contig17175.4420.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17175.4420.1
Unique NamemRNA_H-elongata_contig17175.4420.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17175.4420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17175contigH-elongata_contig17175:4785..5259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size423
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.2251656-UTR-H-elongata_contig17175:4784..48361622930000.2251656-UTR-H-elongata_contig17175:4784..4836Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17175 4785..4836 +
1691679240.7792327-UTR-H-elongata_contig17175:4784..48361691679240.7792327-UTR-H-elongata_contig17175:4784..4836Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17175 4785..4836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.2663841-CDS-H-elongata_contig17175:4836..52591622930000.2663841-CDS-H-elongata_contig17175:4836..5259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17175 4837..5259 +
1691679240.787769-CDS-H-elongata_contig17175:4836..52591691679240.787769-CDS-H-elongata_contig17175:4836..5259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17175 4837..5259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17175.4420.1prot_H-elongata_contig17175.4420.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17175 4837..5259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17175.4420.1

>prot_H-elongata_contig17175.4420.1 ID=prot_H-elongata_contig17175.4420.1|Name=mRNA_H-elongata_contig17175.4420.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MFNVTIKKCAVEECGEDPRCGMSGSKESQYYAENALDGMVNCMKKEYGSG
TGCNEPSYEVASSKKPDYRTEHSLEGMVKMHKNNYSGGGCSMVSSYKKAF
SSKRKYLAENDAEGLVNVVNKRCAGDGCSKVPSYGMVGSKT
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mRNA from alignment at H-elongata_contig17175:4785..5259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17175.4420.1 ID=mRNA_H-elongata_contig17175.4420.1|Name=mRNA_H-elongata_contig17175.4420.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=475bp|location=Sequence derived from alignment at H-elongata_contig17175:4785..5259+ (Himanthalia elongata Himel1 dioecious)
AGTGGTCGGGAGCGGTTAGGCGAAGTATTGGCCCGAACAAGCCTGAAGGG
CAATGTTCAACGTTACGATTAAGAAGTGTGCGGTCGAGGAATGCGGTGAG
GACCCGAGATGCGGAATGTCCGGGAGCAAAGAGTCGCAATACTATGCCGA
GAATGCCCTAGACGGAATGGTCAACTGTATGAAAAAAGAATATGGTAGTG
GTACAGGCTGTAACGAACCAAGCTACGAGGTGGCGAGTAGCAAAAAGCCT
GACTACCGTACAGAGCATTCATTGGAAGGAATGGTAAAAATGCATAAAAA
TAATTATTCTGGTGGGGGCTGCTCTATGGTATCAAGCTACAAGAAGGCCT
TCAGCAGTAAGCGGAAATATTTGGCCGAGAATGACGCCGAGGGATTGGTC
AACGTTGTTAATAAGAGGTGTGCTGGTGATGGATGCTCAAAGGTACCTAG
CTACGGCATGGTCGGCAGTAAAACG
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Coding sequence (CDS) from alignment at H-elongata_contig17175:4785..5259+

>mRNA_H-elongata_contig17175.4420.1 ID=mRNA_H-elongata_contig17175.4420.1|Name=mRNA_H-elongata_contig17175.4420.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig17175:4785..5259+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAACGTTACGATTAAGAAGTGTGCGGTCGAGGAATGCGGTGAGGA
CCCGAGATGCGGAATGTCCGGGAGCAAAGAGTCGCAATACTATGCCGAGA
ATGCCCTAGACGGAATGGTCAACTGTATGAAAAAAGAATATGGTAGTGGT
ACAGGCTGTAACGAACCAAGCTACGAGGTGGCGAGTAGCAAAAAGCCTGA
CTACCGTACAGAGCATTCATTGGAAGGAATGGTAAAAATGCATAAAAATA
ATTATTCTGGTGGGGGCTGCTCTATGGTATCAAGCTACAAGAAGGCCTTC
AGCAGTAAGCGGAAATATTTGGCCGAGAATGACGCCGAGGGATTGGTCAA
CGTTGTTAATAAGAGGTGTGCTGGTGATGGATGCTCAAAGGTACCTAGCT
ACGGCATGGTCGGCAGTAAAACGATGTTCAACGTTACGATTAAGAAGTGT
GCGGTCGAGGAATGCGGTGAGGACCCGAGATGCGGAATGTCCGGGAGCAA
AGAGTCGCAATACTATGCCGAGAATGCCCTAGACGGAATGGTCAACTGTA
TGAAAAAAGAATATGGTAGTGGTACAGGCTGTAACGAACCAAGCTACGAG
GTGGCGAGTAGCAAAAAGCCTGACTACCGTACAGAGCATTCATTGGAAGG
AATGGTAAAAATGCATAAAAATAATTATTCTGGTGGGGGCTGCTCTATGG
TATCAAGCTACAAGAAGGCCTTCAGCAGTAAGCGGAAATATTTGGCCGAG
AATGACGCCGAGGGATTGGTCAACGTTGTTAATAAGAGGTGTGCTGGTGA
TGGATGCTCAAAGGTACCTAGCTACGGCATGGTCGGCAGTAAAACG
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