mRNA_H-elongata_contig171676.4416.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171676.4416.1
Unique NamemRNA_H-elongata_contig171676.4416.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig171676.4416.1 vs. uniprot
Match: A0A6H5KUE0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUE0_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 1.650e-50
Identity = 87/140 (62.14%), Postives = 107/140 (76.43%), Query Frame = 1 
Query:    1 LSQAKLAVHRAMLGRCFSILSTCLRKEQLKVGLNVEEVAALARSAYLAGPHERLGAIFPLFDTHGDGHLDSDGVERAVDATVTSVTSVADRFYGVAARSALDKKAAKAMPKMMKYAQWDMLQVPLKRRCAFAWAENRKQV 420
            L QA+L  HRAML    S+LS+ L K+QLK GL++ EV A  RSAYLA P +RL A++PLFDTHGDGHLD++ V+ AVDA V SVT+ ++R Y  AAR ALDKK A  MP  MKY  WD+++VP+KRRC+FAWAENRKQV
Sbjct:  278 LYQARLGAHRAMLCHFLSLLSSSLGKQQLKTGLSLGEVVAATRSAYLAAPEDRLAAVYPLFDTHGDGHLDTESVDLAVDAVVLSVTAASERCYAAAARPALDKKTAAVMPATMKYVLWDVMEVPMKRRCSFAWAENRKQV 417
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171676.4416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUE0_9PHAE1.650e-5062.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171676contigH-elongata_contig171676:309..1288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_002220.1
Exons2
Model size420
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929999.8203547-CDS-H-elongata_contig171676:308..5651622929999.8203547-CDS-H-elongata_contig171676:308..565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171676 309..565 -
1691679240.6847582-CDS-H-elongata_contig171676:308..5651691679240.6847582-CDS-H-elongata_contig171676:308..565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171676 309..565 -
1622929999.8408325-CDS-H-elongata_contig171676:1125..12881622929999.8408325-CDS-H-elongata_contig171676:1125..1288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171676 1126..1288 -
1691679240.694201-CDS-H-elongata_contig171676:1125..12881691679240.694201-CDS-H-elongata_contig171676:1125..1288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171676 1126..1288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171676.4416.1prot_H-elongata_contig171676.4416.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171676 309..1288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171676.4416.1

>prot_H-elongata_contig171676.4416.1 ID=prot_H-elongata_contig171676.4416.1|Name=mRNA_H-elongata_contig171676.4416.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
LSQAKLAVHRAMLGRCFSILSTCLRKEQLKVGLNVEEVAALARSAYLAGP
HERLGAIFPLFDTHGDGHLDSDGVERAVDATVTSVTSVADRFYGVAARSA
LDKKAAKAMPKMMKYAQWDMLQVPLKRRCAFAWAENRKQV
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mRNA from alignment at H-elongata_contig171676:309..1288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171676.4416.1 ID=mRNA_H-elongata_contig171676.4416.1|Name=mRNA_H-elongata_contig171676.4416.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=980bp|location=Sequence derived from alignment at H-elongata_contig171676:309..1288- (Himanthalia elongata Himel1 dioecious)
CTGTCACAGGCGAAGCTTGCGGTTCACAGAGCGATGCTGGGCCGGTGCTT
CTCAATTCTATCCACGTGCTTGCGCAAAGAACAGCTGAAGGTCGGACTCA
ACGTGGAAGAAGTTGCGGCCCTAGCGAGATCGGCGTACCTTGCCGGCCCT
CACGAGAGGCTAGGTGAGCTGTCACGCCCATTGGAGTGTCGTCTCCTTAT
CCCGGGGGCTTGCGGGCAGATGGTTGAAATTATCTACCGTCGACGGCCCT
CTCTAAAGTACTGATACTGTCATGCGTGATGATGATGATGATCGTCCCGC
ACTTTCATCCCACCCATTCGATAGTTTGGACCGGGCATTTCCCTGGCCCC
GGCGTCTATAATATATAGCCAAACGGGTGACCCCGGTGCCTGACAACCAC
CCGAGGGTGCGCTCTGGTGTTATTTCCCGAAGTAGCGACCAGACCTCCTC
GTCAGGTGTAACCGCCCGATGATCAGCAGCTAAAGCTCCACCCACGTTAT
GACGATACCCCGTTGGTACGAAGAAACAGTGCCTGCTGCTGTTTGCAGTT
CCCGCTATAATAGCAGTCCCAAAATTGAACTAAATAGACGCAGCGGAGAC
CACTGTCCGTTATGCTTTTTTTTATTTATTTTTTTTACGTAGCATAGAAA
TAATCTAAAAACAGAACGGAGAAATCGTGAGTGCGTCCGTTTATCCGTCT
ATCGCCGCCCTTACCCCACCCAGGCGCGATTTTCCCGCTCTTCGACACGC
ATGGCGACGGGCATCTCGACTCTGACGGCGTGGAGCGCGCGGTGGACGCG
ACGGTGACTTCGGTGACCTCGGTCGCGGATCGTTTCTACGGAGTGGCGGC
GCGATCGGCGCTGGACAAGAAAGCGGCAAAGGCCATGCCCAAGATGATGA
AGTACGCCCAATGGGATATGCTGCAAGTGCCGCTGAAGAGGCGGTGCGCC
TTTGCGTGGGCGGAGAACCGCAAGCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig171676:309..1288-

>mRNA_H-elongata_contig171676.4416.1 ID=mRNA_H-elongata_contig171676.4416.1|Name=mRNA_H-elongata_contig171676.4416.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig171676:309..1288- (Himanthalia elongata Himel1 dioecious)
CTGTCACAGGCGAAGCTTGCGGTTCACAGAGCGATGCTGGGCCGGTGCTT
CTCAATTCTATCCACGTGCTTGCGCAAAGAACAGCTGAAGGTCGGACTCA
ACGTGGAAGAAGTTGCGGCCCTAGCGAGATCGGCGTACCTTGCCGGCCCT
CACGAGAGGCTAGCTGTCACAGGCGAAGCTTGCGGTTCACAGAGCGATGC
TGGGCCGGTGCTTCTCAATTCTATCCACGTGCTTGCGCAAAGAACAGCTG
AAGGTCGGACTCAACGTGGAAGAAGTTGCGGCCCTAGCGAGATCGGCGTA
CCTTGCCGGCCCTCACGAGAGGCTAGGCGCGATTTTCCCGCTCTTCGACA
CGCATGGCGACGGGCATCTCGACTCTGACGGCGTGGAGCGCGCGGTGGAC
GCGACGGTGACTTCGGTGACCTCGGTCGCGGATCGTTTCTACGGAGTGGC
GGCGCGATCGGCGCTGGACAAGAAAGCGGCAAAGGCCATGCCCAAGATGA
TGAAGTACGCCCAATGGGATATGCTGCAAGTGCCGCTGAAGAGGCGGTGC
GCCTTTGCGTGGGCGGAGAACCGCAAGCAGGTGGCGCGATTTTCCCGCTC
TTCGACACGCATGGCGACGGGCATCTCGACTCTGACGGCGTGGAGCGCGC
GGTGGACGCGACGGTGACTTCGGTGACCTCGGTCGCGGATCGTTTCTACG
GAGTGGCGGCGCGATCGGCGCTGGACAAGAAAGCGGCAAAGGCCATGCCC
AAGATGATGAAGTACGCCCAATGGGATATGCTGCAAGTGCCGCTGAAGAG
GCGGTGCGCCTTTGCGTGGGCGGAGAACCGCAAGCAGGTG
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