mRNA_H-elongata_contig171604.4412.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171604.4412.1
Unique NamemRNA_H-elongata_contig171604.4412.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig171604.4412.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.550e-13
Identity = 50/138 (36.23%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   19 KASNQARVRGRKITVATHNVRTMAVDGAHGV-ERALDVLNVYDRLGCDVIGLQETRRSGHSAFTQAGYSVYCSAECCGENCEKKGQGGVGLAVGT----SITRAAHPPEFISDRLLNVTLELRGQVKAVTVFVTYAPT 417
            KA+ + + R   ++  T NVRT+A  G + +    + V+ +    GCDVIGLQETRR+G  +    GY +  S    G   +K+G  GVG+A+      S+       E IS RL+ V L++ G+   VT  V YAPT
Sbjct:  163 KAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTK-DKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFLVGYAPT 298          
BLAST of mRNA_H-elongata_contig171604.4412.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 6.270e-13
Identity = 50/138 (36.23%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   19 KASNQARVRGRKITVATHNVRTMAVDGAHGV-ERALDVLNVYDRLGCDVIGLQETRRSGHSAFTQAGYSVYCSAECCGENCEKKGQGGVGLAVGT----SITRAAHPPEFISDRLLNVTLELRGQVKAVTVFVTYAPT 417
            KA+ + + R   ++  T NVRT+A  G + +    + V+ +    GCDVIGLQETRR+G  +    GY +  S    G   +K+G  GVG+A+      S+       E IS RL+ V L++ G+   VT  V YAPT
Sbjct:   74 KAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTK-DKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPT 209          
BLAST of mRNA_H-elongata_contig171604.4412.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.150e-12
Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   19 KASNQARVRGRKITVATHNVRTMAVDGAHGV-ERALDVLNVYDRLGCDVIGLQETRRSGHSAFTQAGYSVYCSAECCGENCEKKGQGGVGLAVGT----SITRAAHPPEFISDRLLNVTLELRGQVKAVTVFVTYAPT 417
            KA+ + + R   ++  T NVRT+A  G + +    + V+ ++   GCDVIGLQETRR G  +    GY +  S    G   +K+G  GVG+A+      S+       E IS RL+ V L++ G    V   V YAPT
Sbjct:  121 KAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQIWSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTK-DKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GHTCGVISVVGYAPT 256          
BLAST of mRNA_H-elongata_contig171604.4412.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.120e-12
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1
Query:   19 KASNQARVRGRKITVATHNVRTMAVDGAHGV-ERALDVLNVYDRLGCDVIGLQETRRSGHSAFTQAGYSVYCSAECCGENCEKKGQGGVGLAVGT----SITRAAHPPEFISDRLLNVTLELRGQVKAVTVFVTYAPT 417
            KA+ + + R   ++  T NVRT+A  G + +    + V+ +    GCDVIGLQETRR G  +    GY +  S    G   +K+G  GVG+A+      S+       E I  RL+ V L + G+   +T  V YAPT
Sbjct:  136 KAAAKKKAREGDLSFGTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTK-DKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRI-GRTCGITFVVRYAPT 271          
BLAST of mRNA_H-elongata_contig171604.4412.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.050e-11
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1
Query:   19 KASNQARVRGRKITVATHNVRTMAVDGAHGV-ERALDVLNVYDRLGCDVIGLQETRRSGHSAFTQAGYSVYCSAECCGENCEKKGQGGVGLAVGT----SITRAAHPPEFISDRLLNVTLELRGQVKAVTVFVTYAPT 417
            KA+ + + R   ++    NVRT+A  G   +    + ++ +    GCDVIGLQETRR G  +    GY +  S    G   +K+G  GVG+A+      S+       E IS RL+ V L++ G+   VT  V YAPT
Sbjct:   47 KAAAKKKAREGDLSFGAFNVRTLAYSGRKPIGHNVMTIMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTK-DKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPT 182          
BLAST of mRNA_H-elongata_contig171604.4412.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.050e-11
Identity = 47/138 (34.06%), Postives = 72/138 (52.17%), Query Frame = 1
Query:   19 KASNQARVRGRKITVATHNVRTMAVDGAHGV-ERALDVLNVYDRLGCDVIGLQETRRSGHSAFTQAGYSVYCSAECCGENCEKKGQGGVGLAVGTS----ITRAAHPPEFISDRLLNVTLELRGQVKAVTVFVTYAPT 417
            KA+ + + R   ++  T +VRT+   G + +    + V+ +    GCDVIGLQETRR G  +    GY +  S    G   +K+G+ GVG+A+  +    +       E IS RL+ V L++ G+   VT  V YAPT
Sbjct:  143 KAAAKKKAREGDLSFGTFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTK-DKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQI-GRTCGVTFVVGYAPT 278          
BLAST of mRNA_H-elongata_contig171604.4412.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.460e-11
Identity = 48/138 (34.78%), Postives = 70/138 (50.72%), Query Frame = 1
Query:   19 KASNQARVRGRKITVATHNVRTMAVDGAHGV-ERALDVLNVYDRLGCDVIGLQETRRSGHSAFTQAGYSVYCSAECCGENCEKKGQGGVGLAVGT----SITRAAHPPEFISDRLLNVTLELRGQVKAVTVFVTYAPT 417
            K + + + R   ++  T NV T+A  G + +    + V+ +    GCDVIGLQETRR G  +    GY +  S    G   +K+G  GVG+A+      S+       E IS RL+ V L++ G+   VT  V YAPT
Sbjct:  645 KVAGKKKAREGDLSFGTFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTK-DKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVRYAPT 780          
BLAST of mRNA_H-elongata_contig171604.4412.1 vs. uniprot
Match: A0A6H5KZE6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE6_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.500e-11
Identity = 46/126 (36.51%), Postives = 66/126 (52.38%), Query Frame = 1
Query:   55 ITVATHNVRTMAVDGAHGV-ERALDVLNVYDRLGCDVIGLQETRRSGHSAFTQAGYSVYCSAECCGENCEKKGQGGVGLAVGTSITRAA----HPPEFISDRLLNVTLELRGQVKAVTVFVTYAPT 417
            ++  T NV T+A  G + +    + V+ +    GCDVIGLQETRR G  +    GY +  S    G   +K+G  GVG+A+  +I  +        E IS RL+ V L++ G+   VT  V YAPT
Sbjct:    9 LSFGTFNVHTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTK-DKRGGHGVGIAIKEAIWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPT 132          
BLAST of mRNA_H-elongata_contig171604.4412.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.420e-11
Identity = 48/138 (34.78%), Postives = 71/138 (51.45%), Query Frame = 1
Query:   19 KASNQARVRGRKITVATHNVRTMAVDGAHGV-ERALDVLNVYDRLGCDVIGLQETRRSGHSAFTQAGYSVYCSAECCGENCEKKGQGGVGL----AVGTSITRAAHPPEFISDRLLNVTLELRGQVKAVTVFVTYAPT 417
            KA+ + + R   ++  T NVRT+A  G + +    + V+ +    GCDVIGLQETRR+G  +    GY +  S    G   +K+G  GVG+    A+  S+       E I  RL+ V L++ G+   V   V YAPT
Sbjct:   69 KAAAKRKAREGDLSFGTFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTK-DKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQI-GRTCGVAFVVGYAPT 204          
BLAST of mRNA_H-elongata_contig171604.4412.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 2.640e-11
Identity = 47/125 (37.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query:   55 ITVATHNVRTMAVDGAHGV-ERALDVLNVYDRLGCDVIGLQETRRSGHSAFTQAGYSVYCSAECCGENCEKKGQGGVGLAVGTSITRAA----HPPEFISDRLLNVTLELRGQVKAVTVFVTYAP 414
            ++  T NVRT+A  G + +    + V+ +    GCDVIGLQETRR G  +    GY V  S    G   +K+G  GVG+A+  ++  +A       E IS RL+ V L++ G+   VT  V YAP
Sbjct:  123 VSFGTFNVRTLAYSGRNPIGHNVMTVMQICSTNGCDVIGLQETRREGQGSIAHDGYVVIWSGARAGTK-DKRGVHGVGIAIKEAMWDSAGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAP 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171604.4412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3Q1_9PHAE4.550e-1336.23Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JMB4_9PHAE6.270e-1336.23Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K5A7_9PHAE3.150e-1235.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L660_9PHAE4.120e-1234.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE1.050e-1134.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN7_9PHAE1.050e-1134.06Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K1H7_9PHAE1.460e-1134.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZE6_9PHAE1.500e-1136.51Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KV75_9PHAE2.420e-1134.78Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5KDU4_9PHAE2.640e-1137.60Reverse transcriptase domain-containing protein (F... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171604contigH-elongata_contig171604:86..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929999.270122-CDS-H-elongata_contig171604:85..5021622929999.270122-CDS-H-elongata_contig171604:85..502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171604 86..502 -
1691679240.470623-CDS-H-elongata_contig171604:85..5021691679240.470623-CDS-H-elongata_contig171604:85..502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171604 86..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171604.4412.1prot_H-elongata_contig171604.4412.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171604 86..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171604.4412.1

>prot_H-elongata_contig171604.4412.1 ID=prot_H-elongata_contig171604.4412.1|Name=mRNA_H-elongata_contig171604.4412.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
RLLRQSKASNQARVRGRKITVATHNVRTMAVDGAHGVERALDVLNVYDRL
GCDVIGLQETRRSGHSAFTQAGYSVYCSAECCGENCEKKGQGGVGLAVGT
SITRAAHPPEFISDRLLNVTLELRGQVKAVTVFVTYAPT
back to top

mRNA from alignment at H-elongata_contig171604:86..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171604.4412.1 ID=mRNA_H-elongata_contig171604.4412.1|Name=mRNA_H-elongata_contig171604.4412.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig171604:86..502- (Himanthalia elongata Himel1 dioecious)
CGCCTCCTGCGACAAAGCAAAGCGAGCAATCAAGCACGTGTGCGTGGACG GAAGATTACAGTTGCCACACACAACGTCCGGACGATGGCGGTGGATGGGG CGCACGGAGTTGAACGGGCGCTAGACGTTTTGAATGTGTACGATCGACTG GGGTGCGACGTTATCGGTTTGCAGGAGACCCGCCGCAGTGGACATTCAGC CTTCACTCAGGCTGGCTACTCGGTGTACTGCAGTGCTGAGTGTTGTGGGG AAAATTGTGAGAAGAAAGGGCAAGGTGGAGTTGGGCTAGCTGTTGGAACC TCCATCACACGTGCTGCACACCCACCGGAGTTTATAAGTGATCGCTTGCT AAATGTTACACTTGAACTACGGGGTCAAGTCAAGGCCGTTACGGTTTTTG TGACGTATGCCCCCACT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig171604:86..502-

>mRNA_H-elongata_contig171604.4412.1 ID=mRNA_H-elongata_contig171604.4412.1|Name=mRNA_H-elongata_contig171604.4412.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig171604:86..502- (Himanthalia elongata Himel1 dioecious)
CGCCTCCTGCGACAAAGCAAAGCGAGCAATCAAGCACGTGTGCGTGGACG
GAAGATTACAGTTGCCACACACAACGTCCGGACGATGGCGGTGGATGGGG
CGCACGGAGTTGAACGGGCGCTAGACGTTTTGAATGTGTACGATCGACTG
GGGTGCGACGTTATCGGTTTGCAGGAGACCCGCCGCAGTGGACATTCAGC
CTTCACTCAGGCTGGCTACTCGGTGTACTGCAGTGCTGAGTGTTGTGGGG
AAAATTGTGAGAAGAAAGGGCAAGGTGGAGTTGGGCTAGCTGTTGGAACC
TCCATCACACGTGCTGCACACCCACCGGAGTTTATAAGTGATCGCTTGCT
AAATGTTACACTTGAACTACGGGGTCAAGTCAAGGCCGTTACGGTTTTTG
TGACGTATGCCCCCACTCGCCTCCTGCGACAAAGCAAAGCGAGCAATCAA
GCACGTGTGCGTGGACGGAAGATTACAGTTGCCACACACAACGTCCGGAC
GATGGCGGTGGATGGGGCGCACGGAGTTGAACGGGCGCTAGACGTTTTGA
ATGTGTACGATCGACTGGGGTGCGACGTTATCGGTTTGCAGGAGACCCGC
CGCAGTGGACATTCAGCCTTCACTCAGGCTGGCTACTCGGTGTACTGCAG
TGCTGAGTGTTGTGGGGAAAATTGTGAGAAGAAAGGGCAAGGTGGAGTTG
GGCTAGCTGTTGGAACCTCCATCACACGTGCTGCACACCCACCGGAGTTT
ATAAGTGATCGCTTGCTAAATGTTACACTTGAACTACGGGGTCAAGTCAA
GGCCGTTACGGTTTTTGTGACGTATGCCCCCACT
back to top