mRNA_H-elongata_contig1716.4410.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1716.4410.1
Unique NamemRNA_H-elongata_contig1716.4410.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1716.4410.1 vs. uniprot
Match: D8LU57_ECTSI (UEV domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU57_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.570e-27
Identity = 64/125 (51.20%), Postives = 80/125 (64.00%), Query Frame = 1 
Query:    7 TLNMEEVEAKADFIRHNARVKAVVPADR---LLEFSVKSGWEPLCTFLGVPVPDAPFPRLNSREDIMIRFARFGTKGWVAMLSATAAAGVSVGIASIIGGRHIGEAVAAVIVCVVSSSFLEAVRV 372
            T  MEE EAKAD++RHN  V A V AD    LLEFSV+ GW PLC FL V VPD PFP++NSRE++ IR  RF   GW+ M +    AG SV  AS  GG+  G A+AA    V++S F +A+ +
Sbjct:  323 THTMEEDEAKADYVRHNKEVLAHVGADNGRELLEFSVEQGWGPLCKFLDVSVPDVPFPKVNSREELKIRLNRFNRHGWLLMAATVTVAGASVAAASFFGGKRAGGALAATEALVLTSRFRKALAL 447
[Close]
BLAST of mRNA_H-elongata_contig1716.4410.1 vs. uniprot
Match: A0A8J3S6S3_PLARO (Sulfotransferase family protein n=2 Tax=Planobispora rosea TaxID=35762 RepID=A0A8J3S6S3_PLARO)

HSP 1 Score: 84.0 bits (206), Expect = 2.930e-16
Identity = 39/61 (63.93%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   31 AKADFIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDAPFPRLNSREDIMIRFAR 213
            A A F RHNA V+A +PADRLL + V  GWEPLC FLGVPVPD PFPR N  E     FAR
Sbjct:  154 AIAYFERHNAEVRAAIPADRLLVYRVGEGWEPLCAFLGVPVPDEPFPRANDSESFWTNFAR 214
[Close]
BLAST of mRNA_H-elongata_contig1716.4410.1 vs. uniprot
Match: A0A5B1LWX7_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides antri TaxID=2607659 RepID=A0A5B1LWX7_9ACTN)

HSP 1 Score: 80.1 bits (196), Expect = 3.530e-16
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   28 EAKADFIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDAPFPRLNSRED 192
            EAKA + RHNA V+A VP DRL+E+S   GWEPLC  LG+PVPD PFPR+N++ D
Sbjct:   25 EAKAAYERHNAHVRATVPPDRLVEWSPGDGWEPLCAALGLPVPDEPFPRVNTKAD 79
[Close]
BLAST of mRNA_H-elongata_contig1716.4410.1 vs. uniprot
Match: A0A183AA27_9TREM (Uncharacterized protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183AA27_9TREM)

HSP 1 Score: 83.6 bits (205), Expect = 6.410e-16
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:   10 LNMEEVEAKADFIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDAPFPRLNSREDIMIRFARFGTKGWVAMLSATAAAGVSVGI 279
            LN +E + K  F+R N  VK VVPADRLL F VK GWEPLC FLG P+P+ PFP +N R+ +  R  +F  +  + + S+    GV++ +
Sbjct:  172 LNDDE-QMKQAFVRRNEEVKLVVPADRLLVFQVKEGWEPLCRFLGKPIPEVPFPHVNDRQSMKERLKQFQRRANIVVASSLILLGVALAL 260
[Close]
BLAST of mRNA_H-elongata_contig1716.4410.1 vs. uniprot
Match: UPI0003681157 (hypothetical protein n=1 Tax=Henriciella marina TaxID=453851 RepID=UPI0003681157)

HSP 1 Score: 82.8 bits (203), Expect = 7.410e-16
Identity = 45/86 (52.33%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:   19 EEVEAKADFIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDAPFPRLNSREDIMIRFARF---GTKGWVAMLSATAAAGV 267
            ++  A+  F +H A VKA +PADRLL F  K GWEPLCTFLG PVPD PFP +N R D   R A F       W+  L A  AAGV
Sbjct:  145 DKEHARKVFEQHEADVKATIPADRLLVFHPKEGWEPLCTFLGEPVPDKPFPNVNDRADFRKRVAAFTWLNRAPWI--LGALVAAGV 228
[Close]
BLAST of mRNA_H-elongata_contig1716.4410.1 vs. uniprot
Match: UPI00109BF298 (uncharacterized protein LOC110252707 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BF298)

HSP 1 Score: 82.0 bits (201), Expect = 1.540e-15
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   43 FIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDAPFPRLNSREDIM 198
            +++HNARVKA +P D+LL ++VK GW+PLC FLGVPVPD PFPRLN +++ +
Sbjct:  151 YLQHNARVKATIPRDKLLVYNVKQGWQPLCEFLGVPVPDVPFPRLNVKDEFI 202
[Close]
BLAST of mRNA_H-elongata_contig1716.4410.1 vs. uniprot
Match: UPI0008301720 (hypothetical protein n=1 Tax=Actinomadura rubrobrunea TaxID=115335 RepID=UPI0008301720)

HSP 1 Score: 81.6 bits (200), Expect = 1.970e-15
Identity = 40/72 (55.56%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:   13 NMEEVEAKADFIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDAPFPRLNSREDIMIRFARFGTKG 228
            ++ E  A A F RH ARV+A VPADRLL F V+ GW PLC FL VPVPD PFP LN R  +   F +   KG
Sbjct:  153 DLAEAPAVAGFRRHVARVRATVPADRLLVFDVREGWGPLCRFLDVPVPDEPFPHLNERGAMAAMFEQMVRKG 224
[Close]
BLAST of mRNA_H-elongata_contig1716.4410.1 vs. uniprot
Match: J7L9D2_NOCAA (Sulfotransferase family protein n=6 Tax=Nocardiopsis alba TaxID=53437 RepID=J7L9D2_NOCAA)

HSP 1 Score: 80.9 bits (198), Expect = 3.160e-15
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:   19 EEVEAKADFIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDAPFPRLNSREDIMIR 204
            +E  A A F RH ARV+A VPADRLL + V  GWEPLC FLGV VPD PFPRLN  E ++ +
Sbjct:  150 DEATAVAAFERHTARVRAEVPADRLLVYRVGQGWEPLCAFLGVDVPDEPFPRLNDTEAMLAK 211
[Close]
BLAST of mRNA_H-elongata_contig1716.4410.1 vs. uniprot
Match: A0A8B2NY89_9HYPH (Uncharacterized protein n=2 Tax=Acuticoccus sediminis TaxID=2184697 RepID=A0A8B2NY89_9HYPH)

HSP 1 Score: 80.5 bits (197), Expect = 3.210e-15
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   37 ADFIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDAPFPRLNSRED 192
            A F+ HN  VKA +PADRLL ++VK GWEPLC FLG+PVP  PFPR N+RE+
Sbjct:  147 AAFVAHNDAVKAAIPADRLLVYAVKDGWEPLCAFLGLPVPKEPFPRTNNREE 198
[Close]
BLAST of mRNA_H-elongata_contig1716.4410.1 vs. uniprot
Match: A0A504YY94_FASGI (Uncharacterized protein n=1 Tax=Fasciola gigantica TaxID=46835 RepID=A0A504YY94_FASGI)

HSP 1 Score: 79.3 bits (194), Expect = 3.240e-15
Identity = 40/77 (51.95%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   43 FIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDAPFPRLNSREDIMIRFARFGTKGWVAMLSATAAAGVSV 273
            FIR N  VK VVPADRLL F+VK GWEPLCTFL  P+PD  FPR N R     R  R+  +    + +   A GV+V
Sbjct:   79 FIRWNQEVKQVVPADRLLVFNVKDGWEPLCTFLNKPIPDVRFPRFNERAHAKSRMKRYYKRALCRITAGELAIGVTV 155
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1716.4410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU57_ECTSI3.570e-2751.20UEV domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A8J3S6S3_PLARO2.930e-1663.93Sulfotransferase family protein n=2 Tax=Planobispo... [more]
A0A5B1LWX7_9ACTN3.530e-1663.64Uncharacterized protein n=1 Tax=Nocardioides antri... [more]
A0A183AA27_9TREM6.410e-1645.56Uncharacterized protein n=1 Tax=Echinostoma capron... [more]
UPI00036811577.410e-1652.33hypothetical protein n=1 Tax=Henriciella marina Ta... [more]
UPI00109BF2981.540e-1561.54uncharacterized protein LOC110252707 n=1 Tax=Exaip... [more]
UPI00083017201.970e-1555.56hypothetical protein n=1 Tax=Actinomadura rubrobru... [more]
J7L9D2_NOCAA3.160e-1561.29Sulfotransferase family protein n=6 Tax=Nocardiops... [more]
A0A8B2NY89_9HYPH3.210e-1565.38Uncharacterized protein n=2 Tax=Acuticoccus sedimi... [more]
A0A504YY94_FASGI3.240e-1551.95Uncharacterized protein n=1 Tax=Fasciola gigantica... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1716contigH-elongata_contig1716:727..1916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue8e-24
Seed eggNOG ortholog2880.D8LU57
Preferred nameSTP22
KEGG koko:K12183
KEGG Pathwayko04144,map04144
KEGG ModuleM00409
GOsGO:0000813,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009898,GO:0009987,GO:0010008,GO:0010605,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016192,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031090,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0036452,GO:0042221,GO:0042493,GO:0042886,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045324,GO:0046618,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0080090,GO:0090150,GO:0097708,GO:0098552,GO:0098562,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1902914,GO:1902915,GO:1903320,GO:1903321,GO:1904669
EggNOG free text desc.Tumor susceptibility
EggNOG OGsKOG2391@1,KOG2391@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size609
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1716.4410.1prot_H-elongata_contig1716.4410.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1716 934..1901 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929999.0924797-UTR-H-elongata_contig1716:726..9331622929999.0924797-UTR-H-elongata_contig1716:726..933Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1716 727..933 -
1691679240.4217854-UTR-H-elongata_contig1716:726..9331691679240.4217854-UTR-H-elongata_contig1716:726..933Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1716 727..933 -
1622929999.1544874-UTR-H-elongata_contig1716:1901..19161622929999.1544874-UTR-H-elongata_contig1716:1901..1916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1716 1902..1916 -
1691679240.4550245-UTR-H-elongata_contig1716:1901..19161691679240.4550245-UTR-H-elongata_contig1716:1901..1916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1716 1902..1916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929999.105891-CDS-H-elongata_contig1716:933..11231622929999.105891-CDS-H-elongata_contig1716:933..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1716 934..1123 -
1691679240.4318812-CDS-H-elongata_contig1716:933..11231691679240.4318812-CDS-H-elongata_contig1716:933..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1716 934..1123 -
1622929999.1203017-CDS-H-elongata_contig1716:1335..14571622929999.1203017-CDS-H-elongata_contig1716:1335..1457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1716 1336..1457 -
1691679240.439633-CDS-H-elongata_contig1716:1335..14571691679240.439633-CDS-H-elongata_contig1716:1335..1457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1716 1336..1457 -
1622929999.1370444-CDS-H-elongata_contig1716:1826..19011622929999.1370444-CDS-H-elongata_contig1716:1826..1901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1716 1827..1901 -
1691679240.4474442-CDS-H-elongata_contig1716:1826..19011691679240.4474442-CDS-H-elongata_contig1716:1826..1901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1716 1827..1901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1716.4410.1

>prot_H-elongata_contig1716.4410.1 ID=prot_H-elongata_contig1716.4410.1|Name=mRNA_H-elongata_contig1716.4410.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MEEVEAKADFIRHNARVKAVVPADRLLEFSVKSGWEPLCTFLGVPVPDAP
FPRLNSREDIMIRFARFGTKGWVAMLSATAAAGVSVGIASIIGGRHIGEA
VAAVIVCVVSSSFLEAVRVTSFYGKKAT*
back to top

mRNA from alignment at H-elongata_contig1716:727..1916-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1716.4410.1 ID=mRNA_H-elongata_contig1716.4410.1|Name=mRNA_H-elongata_contig1716.4410.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1190bp|location=Sequence derived from alignment at H-elongata_contig1716:727..1916- (Himanthalia elongata Himel1 dioecious)
ATCGCCACTCTAAATATGGAAGAAGTGGAAGCGAAGGCGGACTTCATCCG
CCACAACGCACGAGTGAAGGCCGTAGTGCCCGCCGACAGGGTGCGCGAAA
GCCTTCTCACCTCCCGAACCTCGTCTTCATTCCGCATAGCACATGTGTTG
AAACCGTGAGACCTCGTTTGCAGTATTAACGGTCTTGTGAGTTTGAAACA
CAGACAACTGAAAAAGAATGAAACCCGGTACCAAGGCTCTTTAGCGGAGG
AAAGTGATTTACCATAAATAAGTTGGTCCTCTGGTCGATATTGCCAACGC
ATACCCCCCAGTAGTTGTGGTACGTTATGGCTTAGGTATAGGGCCACATC
GTTTTGATTACATCGCCCGCTACTGTTTCTTGAGGTCAACAAACCGACTA
ACGTCCCCACCATTGGCTCCCTTCCCCTCTGTTACCCGAACGGATCGACG
CACACGTAGCTCCTCGAGTTTTCGGTGAAGAGTGGTTGGGAGCCCCTGTG
CACCTTCCTCGGCGTGCCTGTTCCAGACGCTCCCTTCCCGAGATTGAACT
CTCGCGAGGATATCATGATACGATTCGCAAGGTAAGTCCATGTGTGGTAT
TCTAATATGTTAGTCAATCAGTCCCCGTACATGGCTCATCGCTTTAAGCG
TCCCCAAGATAGTGGGTAGTTGCAATACATAGCGTATGGCCTGACGAAAG
TCATCTATTGGTTGTTCTCGGGGGGAATGTGTGAGGAATATTCACATTTT
ATCGCTTTTTTACGGCCTCCGTCTCCGACCCCAAATAATCCAGATTTGGA
ACAAAAGGCTGGGTAGCGATGCTTTCGGCAACTGCTGCTGCTGGAGTCAG
CGTTGGTATTGCCTCTATCATCGGCGGGAGGCACATCGGGGAAGCGGTTG
CCGCGGTGATCGTGTGTGTGGTGTCCTCGAGCTTTCTCGAGGCCGTGCGA
GTGACCTCCTTTTATGGGAAGAAGGCTACTTAAATGTCCACCGGAATGAA
TCATGATTGGGAGATACAAAGCGGGTACATCTGGAGAGGGAGATAACTTT
AGACTTGCCCCGCTCACACACATGACACGTACTTAGAAGCCGTTGAGGAC
AATTAATGTCTCGTAAGATACACGGTCAGCTGCGGTTATGTTGTTCCCGC
GCTGATGATTTGAATGCAGTACAACCTAGCAACGGCGAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1716:727..1916-

>mRNA_H-elongata_contig1716.4410.1 ID=mRNA_H-elongata_contig1716.4410.1|Name=mRNA_H-elongata_contig1716.4410.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig1716:727..1916- (Himanthalia elongata Himel1 dioecious)
ATGGAAGAAGTGGAAGCGAAGGCGGACTTCATCCGCCACAACGCACGAGT
GAAGGCCGTAGTGCCCGCCGACAGGATGGAAGAAGTGGAAGCGAAGGCGG
ACTTCATCCGCCACAACGCACGAGTGAAGGCCGTAGTGCCCGCCGACAGG
CTCCTCGAGTTTTCGGTGAAGAGTGGTTGGGAGCCCCTGTGCACCTTCCT
CGGCGTGCCTGTTCCAGACGCTCCCTTCCCGAGATTGAACTCTCGCGAGG
ATATCATGATACGATTCGCAAGCTCCTCGAGTTTTCGGTGAAGAGTGGTT
GGGAGCCCCTGTGCACCTTCCTCGGCGTGCCTGTTCCAGACGCTCCCTTC
CCGAGATTGAACTCTCGCGAGGATATCATGATACGATTCGCAAGATTTGG
AACAAAAGGCTGGGTAGCGATGCTTTCGGCAACTGCTGCTGCTGGAGTCA
GCGTTGGTATTGCCTCTATCATCGGCGGGAGGCACATCGGGGAAGCGGTT
GCCGCGGTGATCGTGTGTGTGGTGTCCTCGAGCTTTCTCGAGGCCGTGCG
AGTGACCTCCTTTTATGGGAAGAAGGCTACTTAAATTTGGAACAAAAGGC
TGGGTAGCGATGCTTTCGGCAACTGCTGCTGCTGGAGTCAGCGTTGGTAT
TGCCTCTATCATCGGCGGGAGGCACATCGGGGAAGCGGTTGCCGCGGTGA
TCGTGTGTGTGGTGTCCTCGAGCTTTCTCGAGGCCGTGCGAGTGACCTCC
TTTTATGGGAAGAAGGCTACTTAA
back to top