mRNA_H-elongata_contig17138.4399.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17138.4399.1 vs. uniprot
Match: A0A6H5L010_9PHAE (Atx10homo_assoc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L010_9PHAE) HSP 1 Score: 405 bits (1040), Expect = 4.370e-124 Identity = 319/796 (40.08%), Postives = 382/796 (47.99%), Query Frame = 1
Query: 208 DPDFHSPYARSCPEAANALSQAFGVLRDSCAGCRRNQDALRQTSLVD--TALKFAVEQAPFACAKFQPPTS--------------VRLAVQAALQFACNYCVGNEGNQALVWKAWFPRGLMELTNGLKTDRRLLSVVVALIHNCCL------PLRGSGGLEGTGGDAIAAEACAVWIEGQERLRN------LTSDKAFCCLLMKVVPHRLPTESQTRPLPWNSKDAASSASASPSPDCSVDSTKRGDSSGGHGGGGE---DPAAEWLYLLFCRFVQEGLSPRVYDNVGIPAD-----------CRSLATSDHR---RSGSRDTA-----------------EEWVLQQVMEKEEEELFF------------PVTPEQLVVLNLAEVAA------NDEIVTGGERPSPEQRQACHHLVVWLSHLLVEMPLNQSLSPCS------------------------VRPLPPEVENKPEV---SEAASEEAELARRRLREEARSSMLRALAVLLASCEDETRRTAS-----------------------------AVSAISVSSELVTSDSSKLVMSAPDGNKTDRQGARVAQSV---------------------------PSPRSEVRLVPLCLSLLSSCGGTAEPEAKVGGG-YARKSTAAPGEEGDGGVGRVARA-------------PAGRKVDLLKVIGNACFRCPEAQDLAREVGGLPLVLNHCAVDGTNPLLREYALLAVRNLCEGNPANQAAIAALEPQGCAPGAEEALAAVGLKGRVDADGKLRVDPRASS 2064
DP F + R+ P AA AL +AF LR++CAGC N ALR T L + +AL+FAV+QA FACA P + VRLAV+A LQFA NYC G+E ++ +W AWFPRGLMEL N LKTDR LLS+ VALIHNCC+ P G G+ D A EA +G ER R L++DKAFC AS S S + S GGE DPAAEWLYLLFC FVQE L RVYDNVGI A C ++ R G D A EEW +E PVTPEQL+VLNLAE+A +DE+VTGGE PSP QRQAC L WL+ LL MPL+QSL P + +PL P E AA E E RR +REEARS+ LR LA LLA C DETR+ + A +++ T+ S+ +A G ++ +G + P PR LVPLCL LL CGG AEP G ++RK + G AR+ PAGRKV+LLKVIGNACFRC +QDL RE GGLPLVLNHCAVD TNPLLREYALLAVRNLCEGNPANQA+IA+L+PQGC PG E+LA +GL+G V+A+GK V PR ++
Sbjct: 77 DPPFDTAPPRTPPAAARALRRAFTFLRNACAGCPGNNHALRHTGLAEAASALQFAVDQALFACATTSHPAASTAECQSEVGGTSDVRLAVRAGLQFAYNYCAGSEESKVSLWAAWFPRGLMELVNELKTDRGLLSLAVALIHNCCISPRPREPGEDDGSDRGSNRDNGAGEAGXEEADGGERSRGRERLALLSADKAFCXXXXXXXXXX-----------XXXXXXXVGASGSHSRERS---------------GGEPDDDPAAEWLYLLFCCFVQERLCRRVYDNVGIRAGKRRKRPRRRGGCGAVVVDSARVAQSGGEEDGAAGGSGSVRAISGVGRGEEEWGEGGKGRVDEXXXXXXXXXXXXXXXXXPVTPEQLIVLNLAELATGKCGWNSDEVVTGGECPSPRQRQACSALASWLTGLLSAMPLSQSLLPRTGTAQPXXXXXXXXXXXXXXXXXXXXKPLSPSSSAGDEDRGDGVAADAETERVRRSMREEARSAALRGLAALLAGCSDETRQQIAXXXXXXXXXXXXXXXXXXXXXXXXXPQQAATLGVALGEAEETTRSAAKATAAGVGGASEGEGCEATRVPRVREDGGXXXXXXXXXTPTTATPVVLHPEPRG---LVPLCLRLLHGCGGAAEPNPSASSGQFSRKKGSTASAAVAAGARDTARSGSHHRGALSGGAVPAGRKVELLKVIGNACFRCRRSQDLVREEGGLPLVLNHCAVDETNPLLREYALLAVRNLCEGNPANQASIASLQPQGCTPGMVESLADMGLEGSVNAEGKFTVGPRPTT 843
BLAST of mRNA_H-elongata_contig17138.4399.1 vs. uniprot
Match: D8LJX9_ECTSI (Atx10homo_assoc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX9_ECTSI) HSP 1 Score: 343 bits (881), Expect = 2.150e-103 Identity = 272/695 (39.14%), Postives = 322/695 (46.33%), Query Frame = 1
Query: 352 ALKFAVEQAPFACAKFQPPTS--------------VRLAVQAALQFACNYCVGNEGNQALVWKAWFPRGLMELTNGLKTDRRLLSVVVALIHNCCL------PLRGSGGLEGTGGDAIAAEACAVWI------EGQERLRNLTSDKAFCCLLMKVVPHRLPTESQTRPLPWNSKDAASSASASPSPDCSVDSTKRGDSSGGHGGGGEDPAAEWLYLLFCRFVQEGLSPRVYDNVGIPADCRSLATSDHRRSGSRDTAEEWVLQQVMEKEEEELFFPVTPEQLVVLNLAEVAANDEIVTGGERPSPEQRQACHHLVVWLSHLLVEMPLNQSLSPCSVRPLPPEVENKPEVSE----------------------AASEEAELARRRLREEARSSMLRALAVLLASCEDETRRTAS--------------------------------AVSAISVSSELVTSDSSKLVMSAPDGNKTDRQGARVAQ--------------SVP----------SPRSEVRLVPLCLSLLSSCGGTAEPE-AKVGGGYARK--STA-----------AP------GEEGDGGVGRVARAPAGRKVDLLKVIGNACFRCPEAQDLAREVGGLPLVLNHCAVDGTNPLLREYALLAVRNLCEGNPANQAAIAALEPQGCAPGAEEALAAVGLKGRVDADGKLRVDPRASS 2064
AL+FAV+QAPFACA P + VRLAV+A LQFA NYC G+E ++A +W AWFPRGLMEL N LKTDR LLS+ VAL+HNCC+ P G + D EA G+ERL L++DKAFCC AAEWLYLLFC FVQE L RVYDNVGI A R T RR DE+VTGGERP P QRQAC L WL+ LL +PL+QSL P + PP A E E RR +REEARS+ LRALA LLA C DETR+ + S +E T ++K V +A G ++ +G VA+ S+P + + LVPLCL LL CGG AEP A G ++RK STA AP GE DG V PAGRKV+LLKVIGNACFRC +QDL RE GGLPLVLNHC VD NPLLREYALLA+RNLCEGN ANQA+I++L+PQGC PG EEALA +GL+G V+A+GK V PR ++
Sbjct: 3 ALQFAVDQAPFACATTSHPAARTAECQSEVGDASDVRLAVRAGLQFAYNYCAGSEESKASLWAAWFPRGLMELVNELKTDRGLLSLAVALVHNCCISPPPREPREDDGSPRESNRDNGTGEAXXXXXXXXERSRGRERLDLLSADKAFCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------XXXAAEWLYLLFCCFVQERLCRRVYDNVGIRAGKR---TKRPRRQA-----------------------------------------DEVVTGGERPCPRQRQACGALAAWLTGLLSAIPLSQSLLPRTGTAQPPXXXXXXXXXXXXXXXXXXXXXSAGHEERGDGVATDAETERVRRSMREEARSAALRALAALLAGCSDETRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLGVASGEAEETTRSAAK-VTAAGSGGASEGEGCEVARVPRVSEDGGGGRGGSLPLTPTTATPVIAQPEPLGLVPLCLRLLHGCGGAAEPNPAASSGQFSRKEGSTASAAVATGAGDTAPNGSHHRGELPDGAV------PAGRKVELLKVIGNACFRCRRSQDLVREEGGLPLVLNHCKVDEANPLLREYALLALRNLCEGNAANQASISSLQPQGCTPGMEEALADMGLEGSVNAEGKFAVGPRPTT 623
BLAST of mRNA_H-elongata_contig17138.4399.1 vs. uniprot
Match: A0A662XYY0_9STRA (Atx10homo_assoc domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYY0_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.530e-22 Identity = 160/618 (25.89%), Postives = 237/618 (38.35%), Query Frame = 1
Query: 259 ALSQAFGVLRDSCAGCRRNQDALRQTSLVDTALKFAVEQAPFAC--AKFQPPTSVRLAV---QAALQFACNYCVGNEGNQALVWKAWFPRGL-MELTNGLKT---------DRRLLSVVVALIHNCCLPLRGSGGLEGTGGDAIAAEACAVWIEGQERLRNLTSDKAFCCLLMKVVPHRLPTESQTRPLPWNSKDAASSASASPSPDCSVDSTKRGDSSGGHGGGGEDPAAEWLYLLFCRFVQEGLSPRVYDNVGIPADCRSLATSDHRRSGSRDTAEEWVLQQVMEKEEEELFFPVTPEQLVVLNLAEV--AANDEIVTGGERPSPEQRQACHHLVVWLSHLLVEMPLNQSLSPCSVRPLPPEVENKPEVSEAASEEAELARRRLREEARSSMLRALAVLLASCEDETRRTASAVSAISVSSELVTSDSSKLVMSAPDGNKTDRQGARVAQSVPSPRSEVRLVPLCLSLLSSCG-----GTAEPEAKVGGGYARKSTAAPGEEGDGGVGRVARAPAGRKVDLLKVIGNACFRCPEAQDLAREVGGLPLVLNHCAVDGTNPLLREYALLAVRNLCEGNPANQAAIAALEPQGCAPGAEEALAAVGLKGRVDADGKLRV 2046
A + F LR++CA CR NQDA R L+ + A + C + V+L V Q ALQF N GN+ NQAL W+ +FP + LT + R++++ VALI NC ++ AE + E R + +V R+ S ++ LP + +D +DPA EW+ +LF +G + +Y+ VG H S +L+ VTPEQL++L + + A + P + V+ +V M + E++PE +E E R M L E+E + V + V EL DR + +S+ R L LSLL G P+ + +STA E + + P G + L++V+GN FR QDL R+ G LPL LNHC +D TNPL+RE++L+A+RNLCEGN ANQ+ I+AL PQG + AL + VD DGK+++
Sbjct: 66 AATSVFRFLRNACAACRSNQDACRTHELI----QLAHDMVDACCFWVDVEDDALVKLVVLLSQVALQFCVNCVTGNDKNQALAWEFFFPDHFQVRLTKHYSSVKILVECHQHRKIVAFTVALILNCV--------------NSSHAETEPMKAETDAARR------------VDLVSLRMMRSSASQTLPHEEQH--------------IDD--------------QDPAFEWICMLFSVLFHDGHAKDLYNAVGA-----------HMLS--------------------KLWSRVTPEQLILLRMFTMWLVAASSGSQDAAKVKPALPVGTYEFVINTWTYIVTM----------------DDEDRPEEAE---------------EVRKQMWMEL-------ENEAK-----VLLLDVLGEL----------------SLDR----------TTQSDGRTRELLLSLLQELQRVWELGRLNPKPRN-----TRSTAVSAESP---AEQPSTEPFGYRSGLIRVVGNLSFRHSAHQDLVRDEGYLPLFLNHCNIDETNPLIREWSLVALRNLCEGNEANQSYISALRPQGMDSASSVALEKAQMHAEVDDDGKIKL 517
BLAST of mRNA_H-elongata_contig17138.4399.1 vs. uniprot
Match: A0A0L0HAC6_SPIPD (Copper transport protein 86 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HAC6_SPIPD) HSP 1 Score: 110 bits (276), Expect = 1.500e-21 Identity = 49/106 (46.23%), Postives = 72/106 (67.92%), Query Frame = 1
Query: 1750 KVDLLKVIGNACFRCPEAQDLAREVGGLPLVLNHCAVDGTNPLLREYALLAVRNLCEGNPANQAAIAALEPQGCAPGAEEALAAVGLKGRVDADGKLRVDPRASSE 2067
K D +KV+ N C+ E QD R +GG+P++LN C VD NP ++E+A+LA+RNLC+GN NQ +A+L PQG AP +E+ L G++ +VD G++RV +A E
Sbjct: 439 KSDTVKVLANLCYEAKEVQDEIRRIGGIPVILNECRVDDNNPYIKEHAILAIRNLCDGNTENQDLVASLTPQGIAPESEQMLDEAGIQAKVDDSGRVRVGKKAEVE 544
BLAST of mRNA_H-elongata_contig17138.4399.1 vs. uniprot
Match: A0A835ZAD7_9STRA (Spinocerebellar ataxia type 10 protein domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD7_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.650e-21 Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 1
Query: 1708 DGGVGRVARAPAGRKVDLLKVIGNACFRCPEAQDLAREVGGLPLVLNHCAVDGTNPLLREYALLAVRNLCEGNPANQAAIAALEPQG 1968
DGGV P GRK DL+KVI NAC C AQD R GG+PLVL+HC +D +P LRE+ ++AVRNLCEGN NQA +A LE QG
Sbjct: 20 DGGV------PHGRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQG 100
BLAST of mRNA_H-elongata_contig17138.4399.1 vs. uniprot
Match: A0A2D4BF77_PYTIN (Atx10homo_assoc domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF77_PYTIN) HSP 1 Score: 106 bits (264), Expect = 8.680e-21 Identity = 54/106 (50.94%), Postives = 74/106 (69.81%), Query Frame = 1
Query: 1729 ARAPAGRKVDLLKVIGNACFRCPEAQDLAREVGGLPLVLNHCAVDGTNPLLREYALLAVRNLCEGNPANQAAIAALEPQGCAPGAEEALAAVGLKGRVDADGKLRV 2046
A+ P G + +++V+GN C+R + QD+ RE G LPL LNHC VD NPLLRE++L+A+RNLCEGN ANQ I AL PQG + + L + + ++DADGKL+V
Sbjct: 276 AKEPFGYRSAIIRVVGNLCYRQTDHQDIVREKGFLPLFLNHCNVDEMNPLLREWSLVALRNLCEGNEANQQYITALRPQGIDKTSVD-LDGLNVDAKLDADGKLKV 380
BLAST of mRNA_H-elongata_contig17138.4399.1 vs. uniprot
Match: A0A3M6VRE6_9STRA (Atx10homo_assoc domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRE6_9STRA) HSP 1 Score: 105 bits (263), Expect = 6.220e-20 Identity = 52/103 (50.49%), Postives = 72/103 (69.90%), Query Frame = 1
Query: 1738 PAGRKVDLLKVIGNACFRCPEAQDLAREVGGLPLVLNHCAVDGTNPLLREYALLAVRNLCEGNPANQAAIAALEPQGCAPGAEEALAAVGLKGRVDADGKLRV 2046
P G + L++VIGN CFR QDL R+ G LPL LNHC +D TNPL+RE++L+A+RNLCEGN ANQ+ I AL PQG ++ AL ++ ++ DGK+++
Sbjct: 457 PLGYRSRLIRVIGNLCFRHTYHQDLIRDEGYLPLFLNHCNIDETNPLVREWSLVALRNLCEGNEANQSFINALRPQGMDAASDTALEKAKVRVHIEEDGKVKL 559
BLAST of mRNA_H-elongata_contig17138.4399.1 vs. uniprot
Match: A0A225VEV9_9STRA (Atx10homo_assoc domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VEV9_9STRA) HSP 1 Score: 104 bits (260), Expect = 9.250e-20 Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = 1
Query: 1738 PAGRKVDLLKVIGNACFRCPEAQDLAREVGGLPLVLNHCAVDGTNPLLREYALLAVRNLCEGNPANQAAIAALEPQGCAPGAEEALAAVGLKGRVDADGKLRV 2046
P G + L++VIGN FR QDL RE G LPL LNHC +D TNP++RE++L+A+RNLCEGN ANQA I AL PQG + AL ++ + DGK+R+
Sbjct: 388 PFGYRSGLIRVIGNLSFRHTYHQDLVREEGYLPLFLNHCNIDETNPMIREWSLVALRNLCEGNEANQAYITALRPQGMDASSSAALDKTKMRADIGEDGKVRL 490
BLAST of mRNA_H-elongata_contig17138.4399.1 vs. uniprot
Match: A0A6A3TBV9_9STRA (Atx10homo_assoc domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TBV9_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.850e-19 Identity = 51/103 (49.51%), Postives = 70/103 (67.96%), Query Frame = 1
Query: 1738 PAGRKVDLLKVIGNACFRCPEAQDLAREVGGLPLVLNHCAVDGTNPLLREYALLAVRNLCEGNPANQAAIAALEPQGCAPGAEEALAAVGLKGRVDADGKLRV 2046
P G + L++V+GN FR + QDL RE G LPL LNHC +D TNPL+RE++L+A+RNLCEGN ANQ+ I AL PQG + AL ++ + DGK+++
Sbjct: 450 PFGYRSGLIRVVGNLSFRHTDHQDLVREHGYLPLFLNHCNIDETNPLIREWSLVALRNLCEGNEANQSYINALRPQGMDTASSAALEKANMRADIGEDGKVKL 552
BLAST of mRNA_H-elongata_contig17138.4399.1 vs. uniprot
Match: W2PP19_PHYPN (Atx10homo_assoc domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2PP19_PHYPN) HSP 1 Score: 103 bits (256), Expect = 4.560e-19 Identity = 51/103 (49.51%), Postives = 70/103 (67.96%), Query Frame = 1
Query: 1738 PAGRKVDLLKVIGNACFRCPEAQDLAREVGGLPLVLNHCAVDGTNPLLREYALLAVRNLCEGNPANQAAIAALEPQGCAPGAEEALAAVGLKGRVDADGKLRV 2046
P G + L++VIGN FR + QDL RE G LPL LNHC +D TNP++RE++L+A+RNLCEGN ANQ+ I AL PQG + AL ++ + DGK+++
Sbjct: 459 PFGYRSGLIRVIGNLSFRHTDHQDLVREEGYLPLFLNHCNIDETNPMIREWSLVALRNLCEGNEANQSYINALRPQGMDAASNAALDKAKMQADIGVDGKVKL 561 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17138.4399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17138.4399.1 >prot_H-elongata_contig17138.4399.1 ID=prot_H-elongata_contig17138.4399.1|Name=mRNA_H-elongata_contig17138.4399.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=690bp MKAPTWLQSAGKVAKRSGTRHLVFEDPSVLTQLERTVHAAAASAPPSTPSback to top mRNA from alignment at H-elongata_contig17138:1378..6753+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17138.4399.1 ID=mRNA_H-elongata_contig17138.4399.1|Name=mRNA_H-elongata_contig17138.4399.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5376bp|location=Sequence derived from alignment at H-elongata_contig17138:1378..6753+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17138:1378..6753+ >mRNA_H-elongata_contig17138.4399.1 ID=mRNA_H-elongata_contig17138.4399.1|Name=mRNA_H-elongata_contig17138.4399.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4140bp|location=Sequence derived from alignment at H-elongata_contig17138:1378..6753+ (Himanthalia elongata Himel1 dioecious)back to top |