prot_H-elongata_contig17128.4397.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17128.4397.1
Unique Nameprot_H-elongata_contig17128.4397.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length180
Homology
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BLAST of mRNA_H-elongata_contig17128.4397.1 vs. uniprot
Match: D7FR40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR40_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 3.130e-49
Identity = 87/142 (61.27%), Postives = 101/142 (71.13%), Query Frame = 0 
Query:   38 QPRRAEPPPSVEAFQTTNXXXXXXXXXXXXXXXXXNRRETQDEAGEFRPLIAKTDRESVLRGEDYWIDYRELDAARARKVAKAKAPAPDQFAQSKMKAEIVNPYKQNWILVISIAITAMAAFIRINPDVLNDAAISTFPTEL 179
            Q R A+ PP +E+ QT N                  R   ++E GE RPL+ KTDRESVLRGEDYWIDYRE+D  +A + AKAKAPAPDQFAQSKMKAEIVNPYKQNWIL IS+AI A+A F+RINP +L+D AI TFP EL
Sbjct:  143 QGRMAQAPPGLESLQTENQRRRALPLSKLKRVKPKKRAAKEEEEGEIRPLVLKTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWILAISLAIVAIAGFVRINPGILDDPAIITFPNEL 284
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BLAST of mRNA_H-elongata_contig17128.4397.1 vs. uniprot
Match: A0A835YJZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.030e-16
Identity = 54/144 (37.50%), Postives = 75/144 (52.08%), Query Frame = 0 
Query:   37 NQPRRAEPPPSVEAFQTTNXXXXXXXXXXXXXXXXXNRRETQDEAGEFRPLIAKTDRE-SVLRGEDYWIDYRELDAARARKVAKAKAPAPDQFAQSKMKAEIVNPYKQNWILVISIAITAMAAFIRINPDVLNDAAISTFPTEL 179
            NQP   + PP V  FQ+ +                   ++ Q+  GE RPL+ K     SVL+GEDYWID   ++    + V     P  DQF   K++ EIV+PYK N IL I + ITA+ AF+++NP +L+   I  FP EL
Sbjct:   48 NQP---DQPPDVSDFQSDSQKRRNRPLSQLKRQRKV--KQVQEPEGELRPLVKKERNSMSVLQGEDYWIDLSLVNEDNDKPVKPT--PTEDQFKDEKLREEIVSPYKNNTILGIILGITAIIAFVQLNPGILDSYPIINFPEEL 184
[Close]
BLAST of mRNA_H-elongata_contig17128.4397.1 vs. uniprot
Match: K0S2D5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S2D5_THAOC)

HSP 1 Score: 62.8 bits (151), Expect = 1.860e-9
Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 0 
Query:   93 RESVLRGEDYWIDYRELDAARARKVAKAKAPAPDQFAQSKMKAEIVNPYKQNWILVISIAITAMAAFIRINPDVL 167
            R++V +G DYWID  E++ ++AR+   AK     + +Q K+KAEIV PYKQNWI   S+ I  +A   +  P++L
Sbjct:   45 RDAVEQGLDYWIDEEEINKSKARESRPAKTSKRSRMSQDKLKAEIVAPYKQNWIGYFSLTIVILATIGKQFPELL 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17128.4397.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FR40_ECTSI3.130e-4961.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YJZ1_9STRA1.030e-1637.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0S2D5_THAOC1.860e-942.67Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 163..179
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..143
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 144..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17128contigH-elongata_contig17128:1186..3816 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17128.4397.1mRNA_H-elongata_contig17128.4397.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17128 1144..5225 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17128.4397.1 ID=prot_H-elongata_contig17128.4397.1|Name=mRNA_H-elongata_contig17128.4397.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
MALSEETEASSSSASSDIESTVGNLSLRESPLEANINQPRRAEPPPSVEA
FQTTNQRRRARPLSQLKRVKPKNRRETQDEAGEFRPLIAKTDRESVLRGE
DYWIDYRELDAARARKVAKAKAPAPDQFAQSKMKAEIVNPYKQNWILVIS
IAITAMAAFIRINPDVLNDAAISTFPTEL*
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