prot_H-elongata_contig171261.4396.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig171261.4396.1
Unique Nameprot_H-elongata_contig171261.4396.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length61
Homology
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: A0A6H5KE00_9PHAE (YTH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE00_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.970e-10
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 0
Query:   10 EQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQ-RSRQQQQPPG 53
            EQGLQ+LKAFH HK+ TSIVDD++FYENRA+ +Q R + Q Q  G
Sbjct: 1060 EQGLQMLKAFHEHKHVTSIVDDYAFYENRAMQHQHRPKHQHQQHG 1104          
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: D7G0F3_ECTSI (Putative RNA-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F3_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.870e-9
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 0
Query:   10 EQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQ-RSRQQQQPPG 53
            EQGLQ+LKAFH H + TSIVDD++FYENRA+ +Q R + Q Q  G
Sbjct:  485 EQGLQMLKAFHEHTHVTSIVDDYAFYENRALQHQHRPKHQHQQHG 529          
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: C5X154_SORBI (YTH domain-containing protein n=9 Tax=Panicoideae TaxID=147369 RepID=C5X154_SORBI)

HSP 1 Score: 54.3 bits (129), Expect = 5.240e-7
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 0
Query:    1 SLEKKELLREQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQPPGVFGGMI 59
            S + +E+  EQGL++LK F  H   TSI+DDFSFYENR  + Q  R +QQ     GG +
Sbjct:  555 SRDTQEVKLEQGLEMLKIFKEHVTKTSILDDFSFYENRQKLMQEKRAKQQLLQGQGGDV 613          
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: A0A8J6C2P2_ZIZPA (YTH domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J6C2P2_ZIZPA)

HSP 1 Score: 52.8 bits (125), Expect = 1.820e-6
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0
Query:   10 EQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ 50
            EQG+Q+LK F  H + TSI+DDF+FYENR  + Q  R +QQ
Sbjct:  299 EQGIQMLKIFKEHVSKTSILDDFTFYENRQKLMQEKRVKQQ 339          
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: A0A3B6LUU4_WHEAT (YTH domain-containing protein n=34 Tax=Triticeae TaxID=147389 RepID=A0A3B6LUU4_WHEAT)

HSP 1 Score: 51.6 bits (122), Expect = 4.680e-6
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:    1 SLEKKELLREQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ 50
            S + +E+  EQGLQ+LK F  H + TSI+DDFSFY+NR  + Q  + Q+Q
Sbjct:  497 SRDTQEVKLEQGLQVLKIFKDHVSKTSILDDFSFYDNREKIMQERKSQRQ 546          
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: D3G8A6_LOLPR (YTH domain family protein YT521-B-like protein (Fragment) n=3 Tax=Lolium TaxID=4520 RepID=D3G8A6_LOLPR)

HSP 1 Score: 50.8 bits (120), Expect = 8.190e-6
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 0
Query:   10 EQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ 50
            EQG+Q+LK F  H + TSI++DF+FYENR  + Q  R +QQ
Sbjct:  154 EQGVQMLKIFKEHVSKTSILEDFTFYENRQKLMQEKRVKQQ 194          
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: F2DAP2_HORVV (Predicted protein (Fragment) n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2DAP2_HORVV)

HSP 1 Score: 50.8 bits (120), Expect = 8.350e-6
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 0
Query:   10 EQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ 50
            EQG+Q+LK F  H + TSI++DF+FYENR  + Q  R +QQ
Sbjct:  162 EQGIQMLKIFKEHVSKTSILEDFTFYENRQKLMQEKRIKQQ 202          
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: A0A8J5SD56_ZIZPA (YTH domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SD56_ZIZPA)

HSP 1 Score: 50.8 bits (120), Expect = 8.790e-6
Identity = 22/41 (53.66%), Postives = 29/41 (70.73%), Query Frame = 0
Query:   10 EQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ 50
            EQG+Q+L  F  H + TSI+DDF+FYENR  + Q  R +QQ
Sbjct:  566 EQGIQMLNIFKEHVSKTSILDDFTFYENRQKLMQEKRVKQQ 606          
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: A0A804IXB9_MUSAM ((wild Malaysian banana) hypothetical protein n=3 Tax=Musa TaxID=4640 RepID=A0A804IXB9_MUSAM)

HSP 1 Score: 50.1 bits (118), Expect = 1.650e-5
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:    1 SLEKKELLREQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ 50
            S + +E+  +QGLQLL+ F  H + TSI+DDFSFYE+R  M Q  R + Q
Sbjct:  560 SRDTQEVKLDQGLQLLRLFKDHVSKTSILDDFSFYEDRQKMMQEKRSKLQ 609          
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Match: C5WY21_SORBI (YTH domain-containing protein n=6 Tax=Andropogoneae TaxID=147429 RepID=C5WY21_SORBI)

HSP 1 Score: 49.3 bits (116), Expect = 3.070e-5
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0
Query:    1 SLEKKELLREQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQPP 52
            S + +E+  +QGLQ+LK F  H + TSI+DDFSFY++R  + Q  + + Q P
Sbjct:  496 SRDTQEVKLDQGLQVLKIFKDHASKTSILDDFSFYDDREKIMQEKKSKHQHP 547          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171261.4396.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KE00_9PHAE3.970e-1064.44YTH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0F3_ECTSI1.870e-962.22Putative RNA-binding protein n=1 Tax=Ectocarpus si... [more]
C5X154_SORBI5.240e-747.46YTH domain-containing protein n=9 Tax=Panicoideae ... [more]
A0A8J6C2P2_ZIZPA1.820e-656.10YTH domain-containing protein n=1 Tax=Zizania palu... [more]
A0A3B6LUU4_WHEAT4.680e-650.00YTH domain-containing protein n=34 Tax=Triticeae T... [more]
D3G8A6_LOLPR8.190e-653.66YTH domain family protein YT521-B-like protein (Fr... [more]
F2DAP2_HORVV8.350e-653.66Predicted protein (Fragment) n=1 Tax=Hordeum vulga... [more]
A0A8J5SD56_ZIZPA8.790e-653.66YTH domain-containing protein n=1 Tax=Zizania palu... [more]
A0A804IXB9_MUSAM1.650e-550.00(wild Malaysian banana) hypothetical protein n=3 T... [more]
C5WY21_SORBI3.070e-544.23YTH domain-containing protein n=6 Tax=Andropogonea... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12357YTH YT521-B HOMOLOGY DOMAIN-CONTAININGcoord: 5..50
NoneNo IPR availablePANTHERPTHR12357:SF85coord: 5..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171261contigH-elongata_contig171261:404..586 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171261.4396.1mRNA_H-elongata_contig171261.4396.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig171261 404..586 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig171261.4396.1 ID=prot_H-elongata_contig171261.4396.1|Name=mRNA_H-elongata_contig171261.4396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
SLEKKELLREQGLQLLKAFHRHKNTTSIVDDFSFYENRAIMYQRSRQQQQ
PPGVFGGMIV*
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