mRNA_H-elongata_contig171242.4394.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171242.4394.1
Unique NamemRNA_H-elongata_contig171242.4394.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig171242.4394.1 vs. uniprot
Match: D8LK81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK81_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 6.370e-14
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    1 ELHEYYVRDALQCLLHTILFVRAPGSLRPRE 93
            ELHEYYVRDALQCLLHTILFVRAPGSLRPRE
Sbjct:   12 ELHEYYVRDALQCLLHTILFVRAPGSLRPRE 42
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BLAST of mRNA_H-elongata_contig171242.4394.1 vs. uniprot
Match: A0A6H5J856_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J856_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.370e-13
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:    1 ELHEYYVRDALQCLLHTILFVRAPGSLRPRE 93
            ELHEYYVRDALQCLLHTILFVRAPGSLRPRE
Sbjct:   12 ELHEYYVRDALQCLLHTILFVRAPGSLRPRE 42
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BLAST of mRNA_H-elongata_contig171242.4394.1 vs. uniprot
Match: A0A835ZG30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG30_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.910e-10
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:    1 ELHEYYVRDALQCLLHTILFVRAPGSLRPRE 93
            ELHE +VRDALQCLLHTILFVRAPG LRPRE
Sbjct:   12 ELHESHVRDALQCLLHTILFVRAPGPLRPRE 42
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BLAST of mRNA_H-elongata_contig171242.4394.1 vs. uniprot
Match: A0A7S2UB45_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB45_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.850e-6
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 ELHEYYVRDALQCLLHTILFVRAPGSLRPREV 96
            EL  Y VR+ALQC+LHTILF+R+PG + PR+V
Sbjct:   12 ELATYQVREALQCILHTILFIRSPGPVAPRDV 43
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BLAST of mRNA_H-elongata_contig171242.4394.1 vs. uniprot
Match: A0A7S0CA31_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CA31_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 1.110e-5
Identity = 20/32 (62.50%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    1 ELHEYYVRDALQCLLHTILFVRAPGSLRPREV 96
            EL    VR+ALQC+LHTILF+RAPG + PR++
Sbjct:   25 ELSTGQVREALQCILHTILFIRAPGPVAPRDI 56
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BLAST of mRNA_H-elongata_contig171242.4394.1 vs. uniprot
Match: W7TG70_9STRA (Autophagy-related protein 1010 family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG70_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 7.910e-5
Identity = 19/32 (59.38%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    1 ELHEYYVRDALQCLLHTILFVRAPGSLRPREV 96
            EL   + ++ALQCLLH+I+F+RAP  +RPREV
Sbjct:   12 ELRPLHTKEALQCLLHSIIFLRAPNIVRPREV 43
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171242.4394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LK81_ECTSI6.370e-14100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J856_9PHAE2.370e-13100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZG30_9STRA2.910e-1090.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UB45_9STRA1.850e-665.63Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0CA31_9STRA1.110e-562.50Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
W7TG70_9STRA7.910e-559.38Autophagy-related protein 1010 family protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171242contigH-elongata_contig171242:174..275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue3.9e-10
Seed eggNOG ortholog2880.D8LK81
Preferred nameATG101
KEGG koko:K19730
KEGG Pathwayko04136,ko04140,ko04211,map04136,map04140,map04211
GOsGO:0000045,GO:0000407,GO:0002165,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006914,GO:0006996,GO:0007033,GO:0007275,GO:0007552,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009653,GO:0009791,GO:0009886,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010506,GO:0010508,GO:0010623,GO:0012501,GO:0012505,GO:0016020,GO:0016043,GO:0016236,GO:0016239,GO:0016241,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022607,GO:0030154,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034045,GO:0035069,GO:0035096,GO:0035973,GO:0042175,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046983,GO:0048468,GO:0048518,GO:0048522,GO:0048707,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0060033,GO:0061695,GO:0061912,GO:0061919,GO:0065007,GO:0070925,GO:0071840,GO:0098805,GO:0098827,GO:1902494,GO:1902554,GO:1902911,GO:1905037,GO:1990234,GO:1990316
EggNOG free text desc.process utilizing autophagic mechanism
EggNOG OGsKOG4493@1,KOG4493@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929996.668575-CDS-H-elongata_contig171242:173..2751622929996.668575-CDS-H-elongata_contig171242:173..275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171242 174..275 +
1691679239.6721215-CDS-H-elongata_contig171242:173..2751691679239.6721215-CDS-H-elongata_contig171242:173..275Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171242 174..275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171242.4394.1prot_H-elongata_contig171242.4394.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171242 174..275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171242.4394.1

>prot_H-elongata_contig171242.4394.1 ID=prot_H-elongata_contig171242.4394.1|Name=mRNA_H-elongata_contig171242.4394.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=34bp
ELHEYYVRDALQCLLHTILFVRAPGSLRPREVSN
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mRNA from alignment at H-elongata_contig171242:174..275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171242.4394.1 ID=mRNA_H-elongata_contig171242.4394.1|Name=mRNA_H-elongata_contig171242.4394.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=102bp|location=Sequence derived from alignment at H-elongata_contig171242:174..275+ (Himanthalia elongata Himel1 dioecious)
GAGCTCCACGAGTACTACGTGCGCGACGCTCTGCAGTGCCTCCTGCACAC
GATACTTTTCGTTCGAGCGCCGGGGTCCCTTCGTCCGAGGGAGGTGAGCA
AC
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Coding sequence (CDS) from alignment at H-elongata_contig171242:174..275+

>mRNA_H-elongata_contig171242.4394.1 ID=mRNA_H-elongata_contig171242.4394.1|Name=mRNA_H-elongata_contig171242.4394.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at H-elongata_contig171242:174..275+ (Himanthalia elongata Himel1 dioecious)
GAGCTCCACGAGTACTACGTGCGCGACGCTCTGCAGTGCCTCCTGCACAC
GATACTTTTCGTTCGAGCGCCGGGGTCCCTTCGTCCGAGGGAGGTGAGCA
ACGAGCTCCACGAGTACTACGTGCGCGACGCTCTGCAGTGCCTCCTGCAC
ACGATACTTTTCGTTCGAGCGCCGGGGTCCCTTCGTCCGAGGGAGGTGAG
CAAC
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