mRNA_H-elongata_contig17109.4389.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17109.4389.1
Unique NamemRNA_H-elongata_contig17109.4389.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17109.4389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17109contigH-elongata_contig17109:2975..4007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size888
Cds size726
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17109.4389.1prot_H-elongata_contig17109.4389.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17109 3088..3958 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929996.1210709-UTR-H-elongata_contig17109:2974..30871622929996.1210709-UTR-H-elongata_contig17109:2974..3087Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17109 2975..3087 -
1691679239.4163585-UTR-H-elongata_contig17109:2974..30871691679239.4163585-UTR-H-elongata_contig17109:2974..3087Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17109 2975..3087 -
1622929996.1608095-UTR-H-elongata_contig17109:3958..40071622929996.1608095-UTR-H-elongata_contig17109:3958..4007Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17109 3959..4007 -
1691679239.4430983-UTR-H-elongata_contig17109:3958..40071691679239.4430983-UTR-H-elongata_contig17109:3958..4007Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17109 3959..4007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929996.1342795-CDS-H-elongata_contig17109:3087..32491622929996.1342795-CDS-H-elongata_contig17109:3087..3249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17109 3088..3249 -
1691679239.425445-CDS-H-elongata_contig17109:3087..32491691679239.425445-CDS-H-elongata_contig17109:3087..3249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17109 3088..3249 -
1622929996.1488307-CDS-H-elongata_contig17109:3394..39581622929996.1488307-CDS-H-elongata_contig17109:3394..3958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17109 3395..3958 -
1691679239.434053-CDS-H-elongata_contig17109:3394..39581691679239.434053-CDS-H-elongata_contig17109:3394..3958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17109 3395..3958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17109.4389.1

>prot_H-elongata_contig17109.4389.1 ID=prot_H-elongata_contig17109.4389.1|Name=mRNA_H-elongata_contig17109.4389.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp
MLTSCGFSAAGTGLKAGSLLSCVRENTSREESQLGTDSTHLLKAGRWISS
GDSTEKGGGTKSSELVGDKTGVQATMFGAGFSTRPRLPAAHRRSGRFEYA
SRPGSSPRSSLGQIEYEEDEHEGEKRIVINHLVAALLPLPLTPVARIDGN
ITSGKATPLVLDNAVSPRGVPRCISPPAVKEAKRIAVTRRPEGTPPLRWK
YRSGWVTHDVSRRRWRWWRRRRRALNCWWRHSEKALPPRRK*
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mRNA from alignment at H-elongata_contig17109:2975..4007-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17109.4389.1 ID=mRNA_H-elongata_contig17109.4389.1|Name=mRNA_H-elongata_contig17109.4389.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1033bp|location=Sequence derived from alignment at H-elongata_contig17109:2975..4007- (Himanthalia elongata Himel1 dioecious)
TGATGACAGCGAAACCTTGAGAAGTTTTGTCGACGACTCGAAAGGAAAGA
TGTTAACATCCTGTGGGTTTTCCGCTGCAGGTACTGGATTGAAGGCGGGA
TCGCTCTTGTCTTGCGTTCGGGAGAACACCTCACGGGAAGAGTCACAGCT
CGGGACCGACTCGACACATCTGCTCAAGGCAGGTCGTTGGATCAGCAGCG
GTGATAGCACAGAGAAAGGAGGAGGTACAAAGAGTAGTGAGCTTGTTGGT
GACAAGACCGGCGTTCAGGCGACGATGTTTGGCGCCGGCTTCTCGACACG
GCCGCGCTTACCTGCCGCGCATCGACGCTCCGGTCGTTTTGAGTACGCAT
CACGCCCGGGATCCTCGCCCCGGTCGTCGCTCGGTCAGATTGAGTACGAG
GAAGACGAGCACGAGGGAGAAAAGAGAATCGTCATCAACCATCTCGTGGC
AGCGCTTCTGCCCTTACCGCTAACGCCGGTGGCGCGGATCGACGGTAACA
TCACCTCCGGGAAAGCCACCCCGCTCGTTCTAGACAACGCAGTCAGTCCA
CGAGGTGTCCCCCGCTGTATATCCCCCCCCGCGGTGAAAGAAGCGAAACG
CATCGCGGTGACGGTTGAGGTGGCGTCGTTTAGAGGGGGCTCCACCGCCG
CGGCGGAAGTAGGGCAGCGGGCGGGTGGCTTAAGACTTCTTGTGGCAACG
GCAACGGTGGAGGAGGCGGTGGCGGCGGCGACGCAGGCAGTCGTTGTTTT
GTTAGTAGCGTCGTCCGGAAGGGACCCCACCTCTGCGATGGAAGTACCGC
AGCGGGTGGGTGACGCACGATGTGTCGCGGAGACGGTGGAGGTGGTGGCG
GCGACGCAGGCGGGCGCTGAATTGCTGGTGGCGTCACTCAGAGAAGGCTT
TGCCGCCGCGGCGGAAGTAGCGCAGCTGGCGGTTGACGCGCGACTTCTTG
TGGCAACGGCAATGGTGGAAGAAGCGGTGGCAGTGGCGACGCAGGCGGTC
GTTGTTTTTCTGGTAGCGTCGTCCGGAAGGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig17109:2975..4007-

>mRNA_H-elongata_contig17109.4389.1 ID=mRNA_H-elongata_contig17109.4389.1|Name=mRNA_H-elongata_contig17109.4389.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig17109:2975..4007- (Himanthalia elongata Himel1 dioecious)
ATGTTAACATCCTGTGGGTTTTCCGCTGCAGGTACTGGATTGAAGGCGGG
ATCGCTCTTGTCTTGCGTTCGGGAGAACACCTCACGGGAAGAGTCACAGC
TCGGGACCGACTCGACACATCTGCTCAAGGCAGGTCGTTGGATCAGCAGC
GGTGATAGCACAGAGAAAGGAGGAGGTACAAAGAGTAGTGAGCTTGTTGG
TGACAAGACCGGCGTTCAGGCGACGATGTTTGGCGCCGGCTTCTCGACAC
GGCCGCGCTTACCTGCCGCGCATCGACGCTCCGGTCGTTTTGAGTACGCA
TCACGCCCGGGATCCTCGCCCCGGTCGTCGCTCGGTCAGATTGAGTACGA
GGAAGACGAGCACGAGGGAGAAAAGAGAATCGTCATCAACCATCTCGTGG
CAGCGCTTCTGCCCTTACCGCTAACGCCGGTGGCGCGGATCGACGGTAAC
ATCACCTCCGGGAAAGCCACCCCGCTCGTTCTAGACAACGCAGTCAGTCC
ACGAGGTGTCCCCCGCTGTATATCCCCCCCCGCGGTGAAAGAAGCGAAAC
GCATCGCGGTGACGATGTTAACATCCTGTGGGTTTTCCGCTGCAGGTACT
GGATTGAAGGCGGGATCGCTCTTGTCTTGCGTTCGGGAGAACACCTCACG
GGAAGAGTCACAGCTCGGGACCGACTCGACACATCTGCTCAAGGCAGGTC
GTTGGATCAGCAGCGGTGATAGCACAGAGAAAGGAGGAGGTACAAAGAGT
AGTGAGCTTGTTGGTGACAAGACCGGCGTTCAGGCGACGATGTTTGGCGC
CGGCTTCTCGACACGGCCGCGCTTACCTGCCGCGCATCGACGCTCCGGTC
GTTTTGAGTACGCATCACGCCCGGGATCCTCGCCCCGGTCGTCGCTCGGT
CAGATTGAGTACGAGGAAGACGAGCACGAGGGAGAAAAGAGAATCGTCAT
CAACCATCTCGTGGCAGCGCTTCTGCCCTTACCGCTAACGCCGGTGGCGC
GGATCGACGGTAACATCACCTCCGGGAAAGCCACCCCGCTCGTTCTAGAC
AACGCAGTCAGTCCACGAGGTGTCCCCCGCTGTATATCCCCCCCCGCGGT
GAAAGAAGCGAAACGCATCGCGGTGACGCGTCGTCCGGAAGGGACCCCAC
CTCTGCGATGGAAGTACCGCAGCGGGTGGGTGACGCACGATGTGTCGCGG
AGACGGTGGAGGTGGTGGCGGCGACGCAGGCGGGCGCTGAATTGCTGGTG
GCGTCACTCAGAGAAGGCTTTGCCGCCGCGGCGGAAGTAGCGTCGTCCGG
AAGGGACCCCACCTCTGCGATGGAAGTACCGCAGCGGGTGGGTGACGCAC
GATGTGTCGCGGAGACGGTGGAGGTGGTGGCGGCGACGCAGGCGGGCGCT
GAATTGCTGGTGGCGTCACTCAGAGAAGGCTTTGCCGCCGCGGCGGAAGT
AG
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