mRNA_H-elongata_contig171068.4387.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171068.4387.1
Unique NamemRNA_H-elongata_contig171068.4387.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 97.4 bits (241), Expect = 1.950e-20
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 2 
Query:  146 RNTSAGL*LKGSGKWRVCTIRKKYSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
            R   A L ++G  +      ++ YSP    SS+R L+  AA KD +  H D + A+L  D++EE+Y++ P  + +  G V RL KA+YGL QAGRCWN K    +A + F + K+DPC+F
Sbjct:  284 RRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIF 403
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BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 97.4 bits (241), Expect = 2.100e-20
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 2 
Query:  146 RNTSAGL*LKGSGKWRVCTIRKKYSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
            R   A L ++G  +      ++ YSP    SS+R L+  AA KD +  H D + A+L  D++EE+Y++ P  + +  G V RL KA+YGL QAGRCWN K    +A + F + K+DPC+F
Sbjct:  889 RRYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIF 1008
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BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A0A9XEE3_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XEE3_LYGHE)

HSP 1 Score: 89.4 bits (220), Expect = 1.070e-17
Identity = 47/121 (38.84%), Postives = 68/121 (56.20%), Query Frame = 2 
Query:  146 RNTSAGL*LKGSGKWRVCTIRKKYSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEY-QKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
            R   A L ++G  +       + +SP    SS+R L+  A  ++    H D + A+L  D+ EE+Y++ P E      G V RL KAIYGL QAGRCWN K CS +  + F++ +ADPC+F
Sbjct:   36 RKFKARLVVRGCSQVEGADYHETFSPVVKYSSLRFLIALAVQENLNIDHLDVKTAYLYGDLGEEIYVRPPPELLNPAEGKVWRLRKAIYGLKQAGRCWNAKICSVLKKMKFKKSEADPCIF 156
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BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A0A9X2C2_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X2C2_LYGHE)

HSP 1 Score: 84.3 bits (207), Expect = 2.310e-17
Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 2 
Query:  146 RNTSAGL*LKGSGKWRVCTIRKKYSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFP--GSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
            R   A L ++G  + +    +  +SP    +S+R LL  A   + +  H D + A+L  DI+EE+Y+  P E  +    G V RL+KA+YGL Q+GRCWNNK  S +  +G +Q  ADPC++
Sbjct:   40 RRFRARLVVRGCAQIQGQDYQDTFSPVVKYASLRYLLSLAVQNNLDIEHMDVKTAYLYGDIEEEIYVLPPPELLEPAENGKVWRLHKAMYGLKQSGRCWNNKIDSVLRELGLKQSSADPCIY 161
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BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A8I6TLX8_CIMLE (Integrase catalytic domain-containing protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6TLX8_CIMLE)

HSP 1 Score: 87.8 bits (216), Expect = 4.520e-17
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 2 
Query:  158 AGL*LKGSGKWRVCTIRKKYSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFP-GSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
            A L +KG  + +     + +SP     S+R L   A  KD    H D + A+L+  ID+E+Y+  P+E +  P G V  L +A+YGL Q+GRCWN +  + M  +G +Q KADPC++
Sbjct:  424 ARLVVKGCSQRQGIDYEETFSPVVKYPSLRFLFALATKKDMNITHMDVKTAYLQGQIDKEIYVIPPEEMKNKPKGKVWLLKRAMYGLKQSGRCWNQRLHTVMTGLGLQQSKADPCIY 540
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BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A8J6LHG9_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LHG9_TENMO)

HSP 1 Score: 87.0 bits (214), Expect = 9.050e-17
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 2 
Query:  215 YSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
            +SP     SIRM+L  AA++    R FD + AFL  +IDE LY++ PD YQ     V +LN+++YGL QA RCWN +F S ++ +G     AD CVF
Sbjct:  282 FSPVTKFDSIRMILCVAASEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLGLHPTNADACVF 378
[Close]
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A8J6LFP5_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LFP5_TENMO)

HSP 1 Score: 85.1 bits (209), Expect = 3.690e-16
Identity = 43/97 (44.33%), Postives = 59/97 (60.82%), Query Frame = 2 
Query:  215 YSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
            +SP     SIRM+L  A ++    R FD + AFL  +IDE LY++ PD YQ     V +LN+++YGL QA RCWN +F S ++ +G     AD CVF
Sbjct:  217 FSPVTKFDSIRMILCVAVSEKLILRQFDVKTAFLYGNIDEILYMQQPDGYQDGTKRVCKLNRSLYGLKQASRCWNQRFTSVLSRLGLHPTNADVCVF 313
[Close]
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A6H5KRJ6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.960e-16
Identity = 37/97 (38.14%), Postives = 65/97 (67.01%), Query Frame = 2 
Query:  215 YSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
            Y+PT + SS+R+L   A  ++   RHFD ++AF+++D+DE++++++P+   +  G + +LNK++YGL QA R W++     +  +GF Q  AD CVF
Sbjct:  193 YAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVF 289
[Close]
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 3.970e-16
Identity = 37/97 (38.14%), Postives = 65/97 (67.01%), Query Frame = 2 
Query:  215 YSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
            Y+PT + SS+R+L   A  ++   RHFD ++AF+++D+DE++++++P+   +  G + +LNK++YGL QA R W++     +  +GF Q  AD CVF
Sbjct:   12 YAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVF 108
[Close]
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Match: A0A6H5KSD7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSD7_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 5.010e-16
Identity = 37/97 (38.14%), Postives = 65/97 (67.01%), Query Frame = 2 
Query:  215 YSPTPSTSSIRMLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLNKAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF 505
            Y+PT + SS+R+L   A  ++   RHFD ++AF+++D+DE++++++P+   +  G + +LNK++YGL QA R W++     +  +GF Q  AD CVF
Sbjct:  186 YAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVF 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171068.4387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5GI29_9HEMI1.950e-2040.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GGZ1_9HEMI2.100e-2040.00Integrase catalytic domain-containing protein (Fra... [more]
A0A0A9XEE3_LYGHE1.070e-1738.84Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9X2C2_LYGHE2.310e-1737.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A8I6TLX8_CIMLE4.520e-1737.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6LHG9_TENMO9.050e-1745.36Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8J6LFP5_TENMO3.690e-1644.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KRJ6_9PHAE3.960e-1638.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE3.970e-1638.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSD7_9PHAE5.010e-1638.14Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171068contigH-elongata_contig171068:854..1358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score72.8
Seed ortholog evalue8.9e-11
Seed eggNOG ortholog7029.ACYPI061271-PA
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size505
Cds size258
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.979472-UTR-H-elongata_contig171068:853..11001622929995.979472-UTR-H-elongata_contig171068:853..1100Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig171068 854..1100 +
1691679239.3653479-UTR-H-elongata_contig171068:853..11001691679239.3653479-UTR-H-elongata_contig171068:853..1100Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig171068 854..1100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929996.004129-CDS-H-elongata_contig171068:1100..13581622929996.004129-CDS-H-elongata_contig171068:1100..1358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171068 1101..1358 +
1691679239.3780344-CDS-H-elongata_contig171068:1100..13581691679239.3780344-CDS-H-elongata_contig171068:1100..1358Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171068 1101..1358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171068.4387.1prot_H-elongata_contig171068.4387.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171068 1101..1358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171068.4387.1

>prot_H-elongata_contig171068.4387.1 ID=prot_H-elongata_contig171068.4387.1|Name=mRNA_H-elongata_contig171068.4387.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MLLVTAAAKDDEQRHFDAERAFLKADIDEELYIKIPDEYQKFPGSVGRLN
KAIYGLVQAGRCWNNKFCSDMAAIGFEQGKADPCVF
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mRNA from alignment at H-elongata_contig171068:854..1358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171068.4387.1 ID=mRNA_H-elongata_contig171068.4387.1|Name=mRNA_H-elongata_contig171068.4387.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=505bp|location=Sequence derived from alignment at H-elongata_contig171068:854..1358+ (Himanthalia elongata Himel1 dioecious)
AACGATTGGTGGAAAGCAGAGGAAATAGAGATGCGTGGTATGGTCAAGAA
GTGCGTTTATAAGCAGGTGGCTCGGCCGAAAGATAAGCTCGTGGTTGGCA
AAAAAATGCTCTACAAGCGAAAGGTCGGACAGGACAGCAAGGTCGAGAAA
TACAAGTGCAGGCTTGTAGCTCAAGGGTTCTGGGAAGTGGAGGGTGTGTA
CTATACGGAAAAAATATTCGCCCACGCCATCGACCTCATCAATCCGGATG
CTTTTGGTCACAGCAGCGGCCAAGGACGATGAGCAGCGCCATTTTGACGC
GGAGCGGGCATTCTTGAAAGCGGACATCGATGAGGAATTGTACATTAAGA
TCCCCGATGAGTACCAGAAGTTTCCAGGGTCAGTGGGACGGCTGAACAAG
GCCATTTACGGACTCGTACAGGCGGGGAGGTGCTGGAACAACAAGTTCTG
CAGCGATATGGCAGCGATTGGATTCGAGCAGGGAAAGGCGGATCCGTGCG
TGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig171068:854..1358+

>mRNA_H-elongata_contig171068.4387.1 ID=mRNA_H-elongata_contig171068.4387.1|Name=mRNA_H-elongata_contig171068.4387.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig171068:854..1358+ (Himanthalia elongata Himel1 dioecious)
ATGCTTTTGGTCACAGCAGCGGCCAAGGACGATGAGCAGCGCCATTTTGA
CGCGGAGCGGGCATTCTTGAAAGCGGACATCGATGAGGAATTGTACATTA
AGATCCCCGATGAGTACCAGAAGTTTCCAGGGTCAGTGGGACGGCTGAAC
AAGGCCATTTACGGACTCGTACAGGCGGGGAGGTGCTGGAACAACAAGTT
CTGCAGCGATATGGCAGCGATTGGATTCGAGCAGGGAAAGGCGGATCCGT
GCGTGTTCATGCTTTTGGTCACAGCAGCGGCCAAGGACGATGAGCAGCGC
CATTTTGACGCGGAGCGGGCATTCTTGAAAGCGGACATCGATGAGGAATT
GTACATTAAGATCCCCGATGAGTACCAGAAGTTTCCAGGGTCAGTGGGAC
GGCTGAACAAGGCCATTTACGGACTCGTACAGGCGGGGAGGTGCTGGAAC
AACAAGTTCTGCAGCGATATGGCAGCGATTGGATTCGAGCAGGGAAAGGC
GGATCCGTGCGTGTTC
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