mRNA_H-elongata_contig171033.4384.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171033.4384.1
Unique NamemRNA_H-elongata_contig171033.4384.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig171033.4384.1 vs. uniprot
Match: D7FQK4_ECTSI (Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQK4_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.950e-55
Identity = 94/105 (89.52%), Postives = 99/105 (94.29%), Query Frame = 1
Query:   16 KDKCKICNAKKVVTERKVLEVNITKGMRNGQNITFHGEADEAPGVIPGDIIFIVEEKEHPVFRRKGADLVI-KNLTLVESLCGFDSSITHMDKRTLRVKSNAGQV 327
            +DKCK C+AKKVVTERKVLEV+ITKGMRNGQ ITFHGEADEAPGV+PGDIIFIVEEKEH VFRRKGADLVI KNLTLVESLCGFD SITHMDKRTLRV+SN GQV
Sbjct:  219 RDKCKTCSAKKVVTERKVLEVHITKGMRNGQKITFHGEADEAPGVVPGDIIFIVEEKEHSVFRRKGADLVIEKNLTLVESLCGFDFSITHMDKRTLRVRSNPGQV 323          
BLAST of mRNA_H-elongata_contig171033.4384.1 vs. uniprot
Match: A0A6G0WI92_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WI92_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.070e-39
Identity = 69/104 (66.35%), Postives = 85/104 (81.73%), Query Frame = 1
Query:   19 DKCKICNAKKVVTERKVLEVNITKGMRNGQNITFHGEADEAPGVIPGDIIFIVEEKEHPVFRRKGADLVI-KNLTLVESLCGFDSSITHMDKRTLRVKSNAGQV 327
            DKCK+C   KV  ERKVLEV+I KGMRNGQ ITF GEAD+APG IPGDIIF+V+EKEH VF+RKG +L++ K +TLVESLCGF++ + H+D R L +KS AG+V
Sbjct:  213 DKCKVCKGNKVTKERKVLEVHIEKGMRNGQRITFSGEADQAPGTIPGDIIFVVQEKEHAVFQRKGGNLIMEKKITLVESLCGFETIVEHLDGRQLHIKSIAGEV 316          
BLAST of mRNA_H-elongata_contig171033.4384.1 vs. uniprot
Match: F0WJP4_9STRA (Uncharacterized protein AlNc14C124G6770 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJP4_9STRA)

HSP 1 Score: 143 bits (360), Expect = 8.330e-39
Identity = 65/104 (62.50%), Postives = 86/104 (82.69%), Query Frame = 1
Query:   19 DKCKICNAKKVVTERKVLEVNITKGMRNGQNITFHGEADEAPGVIPGDIIFIVEEKEHPVFRRKGADLVI-KNLTLVESLCGFDSSITHMDKRTLRVKSNAGQV 327
            D+CK C  KKV  ERKVLEVNI KGMR+GQ ITF GEAD+APGV+PGDIIF+++EKEH +F+RKG +L++ K ++LVESLCGF++ + H+D R L VK+N G++
Sbjct:  211 DRCKTCKGKKVTKERKVLEVNIEKGMRHGQRITFSGEADQAPGVLPGDIIFVIQEKEHTIFQRKGGNLIMEKKISLVESLCGFEAIVEHLDGRHLHVKTNPGEI 314          
BLAST of mRNA_H-elongata_contig171033.4384.1 vs. uniprot
Match: A0A6G0WI73_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WI73_9STRA)

HSP 1 Score: 140 bits (354), Expect = 5.810e-38
Identity = 66/104 (63.46%), Postives = 85/104 (81.73%), Query Frame = 1
Query:   19 DKCKICNAKKVVTERKVLEVNITKGMRNGQNITFHGEADEAPGVIPGDIIFIVEEKEHPVFRRKGADLVI-KNLTLVESLCGFDSSITHMDKRTLRVKSNAGQV 327
            DKCK+C   KV  ERKVLEV+I KGMRNGQ ITF GEAD+APG+I GDI+F+V+EKEH VF+RKG +L++ K +TLVE+LCGF++ + H+D R L +KS AG+V
Sbjct:  209 DKCKVCKGNKVTKERKVLEVHIEKGMRNGQRITFKGEADQAPGLIAGDIVFVVQEKEHSVFQRKGGNLIMEKKITLVEALCGFETIVEHLDGRHLHIKSIAGEV 312          
BLAST of mRNA_H-elongata_contig171033.4384.1 vs. uniprot
Match: A0A485KM12_9STRA (Aste57867_8968 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KM12_9STRA)

HSP 1 Score: 140 bits (354), Expect = 6.440e-38
Identity = 65/104 (62.50%), Postives = 86/104 (82.69%), Query Frame = 1
Query:   19 DKCKICNAKKVVTERKVLEVNITKGMRNGQNITFHGEADEAPGVIPGDIIFIVEEKEHPVFRRKGADLVI-KNLTLVESLCGFDSSITHMDKRTLRVKSNAGQV 327
            D+CK+C   KV  ERKVLEV+I KGMRNGQ ITF GEAD+APGV+PGDIIF+++EKEH VF+RKG +L++ K ++LVE+LCGF++ + H+D R + VKS AG+V
Sbjct:  215 DRCKVCKGNKVTKERKVLEVHIEKGMRNGQRITFSGEADQAPGVLPGDIIFVIQEKEHSVFQRKGGNLIMEKKISLVEALCGFETIVEHLDGRHVHVKSVAGEV 318          
BLAST of mRNA_H-elongata_contig171033.4384.1 vs. uniprot
Match: A0A836CBH1_9STRA (Heat shock protein 40 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBH1_9STRA)

HSP 1 Score: 140 bits (353), Expect = 9.660e-38
Identity = 67/105 (63.81%), Postives = 84/105 (80.00%), Query Frame = 1
Query:   16 KDKCKICNAKKVVTERKVLEVNITKGMRNGQNITFHGEADEAPGVIPGDIIFIVEEKEHPVFRRKGADLVI-KNLTLVESLCGFDSSITHMDKRTLRVKSNAGQV 327
            +DKC+ C  KKVV ERKVLEVNIT GM++GQ +TFH EADEAPGV+PG+++F+V+EK H  F+RKGADL++ K LTL ESLCGFD  + HMD R LR+ S  G+V
Sbjct:  213 RDKCRECQGKKVVKERKVLEVNITPGMKSGQKLTFHEEADEAPGVLPGNVVFVVQEKPHETFQRKGADLIMEKKLTLSESLCGFDFVVQHMDGRVLRLHSAPGKV 317          
BLAST of mRNA_H-elongata_contig171033.4384.1 vs. uniprot
Match: K3XBN2_GLOUD (Uncharacterized protein n=22 Tax=Oomycota TaxID=4762 RepID=K3XBN2_GLOUD)

HSP 1 Score: 139 bits (349), Expect = 3.600e-37
Identity = 64/104 (61.54%), Postives = 83/104 (79.81%), Query Frame = 1
Query:   19 DKCKICNAKKVVTERKVLEVNITKGMRNGQNITFHGEADEAPGVIPGDIIFIVEEKEHPVFRRKGADLVI-KNLTLVESLCGFDSSITHMDKRTLRVKSNAGQV 327
            D+CK C  KKV  ERKVLEV+I KGMRNGQ ITF GEAD+APG +PGDIIF+V+EKEH  F+RKGA+L++ K +TLVE+LCGF+  + H+D R L +K+  G++
Sbjct:  215 DRCKHCKGKKVTKERKVLEVHIEKGMRNGQRITFSGEADQAPGTVPGDIIFVVQEKEHATFQRKGANLIMEKKITLVEALCGFEMIVEHLDGRHLHIKTRPGEI 318          
BLAST of mRNA_H-elongata_contig171033.4384.1 vs. uniprot
Match: A0A1V9Y7R5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7R5_9STRA)

HSP 1 Score: 135 bits (340), Expect = 9.930e-37
Identity = 63/103 (61.17%), Postives = 82/103 (79.61%), Query Frame = 1
Query:   19 DKCKICNAKKVVTERKVLEVNITKGMRNGQNITFHGEADEAPGVIPGDIIFIVEEKEHPVFRRKGADLVI-KNLTLVESLCGFDSSITHMDKRTLRVKSNAGQ 324
            D+CK C   KV  ERKVLEV+I KGMRNGQ ITF GEAD+APG I GDI+F+V+EKEH +F+RKGA+L++ K +TLVE+LCGF++ + H+D R L VK+  G+
Sbjct:  213 DRCKACKGNKVTKERKVLEVHIEKGMRNGQRITFTGEADQAPGTIAGDIVFVVQEKEHAIFQRKGANLIMEKKITLVEALCGFETIVEHLDGRHLHVKTKPGE 315          
BLAST of mRNA_H-elongata_contig171033.4384.1 vs. uniprot
Match: A0A2D4BE28_PYTIN (Uncharacterized protein n=3 Tax=Pythium TaxID=4797 RepID=A0A2D4BE28_PYTIN)

HSP 1 Score: 136 bits (342), Expect = 3.570e-36
Identity = 63/104 (60.58%), Postives = 83/104 (79.81%), Query Frame = 1
Query:   19 DKCKICNAKKVVTERKVLEVNITKGMRNGQNITFHGEADEAPGVIPGDIIFIVEEKEHPVFRRKGADLVI-KNLTLVESLCGFDSSITHMDKRTLRVKSNAGQV 327
            D+CK C  KKV  ERKVLEV+I KGMR+GQ ITF GEAD+APG IPGDIIF+V+EKEH +F+RKG +L++ K ++LVE+LCGF+  + H+D R L VK+  G++
Sbjct:  211 DRCKACKGKKVTKERKVLEVHIEKGMRHGQRITFAGEADQAPGTIPGDIIFVVQEKEHSIFQRKGGNLIMEKKISLVEALCGFEMIVEHLDGRHLHVKTRPGEI 314          
BLAST of mRNA_H-elongata_contig171033.4384.1 vs. uniprot
Match: A0A7S0SLL4_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SLL4_9CHLO)

HSP 1 Score: 136 bits (342), Expect = 4.060e-36
Identity = 65/105 (61.90%), Postives = 81/105 (77.14%), Query Frame = 1
Query:   16 KDKCKICNAKKVVTERKVLEVNITKGMRNGQNITFHGEADEAPGVIPGDIIFIVEEKEHPVFRRKGADLVI-KNLTLVESLCGFDSSITHMDKRTLRVKSNAGQV 327
            KDKC  C+ +KVV E+KVLEV+I KGM N Q I F GEADEAPG IPGDI+F+V+EKEH +F+RKG DL + K LTL E+LCGF  ++TH+DKR L + +N G V
Sbjct:  214 KDKCGQCHGQKVVQEKKVLEVHIEKGMVNNQKIVFQGEADEAPGTIPGDIVFVVQEKEHALFKRKGTDLFLEKTLTLTEALCGFQMTVTHLDKRQLVISTNEGDV 318          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171033.4384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQK4_ECTSI1.950e-5589.52Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A6G0WI92_9STRA1.070e-3966.35Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
F0WJP4_9STRA8.330e-3962.50Uncharacterized protein AlNc14C124G6770 n=1 Tax=Al... [more]
A0A6G0WI73_9STRA5.810e-3863.46Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A485KM12_9STRA6.440e-3862.50Aste57867_8968 protein n=2 Tax=Aphanomyces TaxID=1... [more]
A0A836CBH1_9STRA9.660e-3863.81Heat shock protein 40 n=1 Tax=Tribonema minus TaxI... [more]
K3XBN2_GLOUD3.600e-3761.54Uncharacterized protein n=22 Tax=Oomycota TaxID=47... [more]
A0A1V9Y7R5_9STRA9.930e-3761.17Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A2D4BE28_PYTIN3.570e-3660.58Uncharacterized protein n=3 Tax=Pythium TaxID=4797... [more]
A0A7S0SLL4_9CHLO4.060e-3661.90Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171033contigH-elongata_contig171033:410..736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue6.8e-32
Seed eggNOG ortholog653948.CCA21495
KEGG koko:K09503
KEGG Pathwayko04141,map04141
EggNOG free text desc.heat shock protein binding
EggNOG OGsCOG0484@1,KOG0712@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03110
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.6284106-CDS-H-elongata_contig171033:409..7361622929995.6284106-CDS-H-elongata_contig171033:409..736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171033 410..736 -
1691679239.226742-CDS-H-elongata_contig171033:409..7361691679239.226742-CDS-H-elongata_contig171033:409..736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171033 410..736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171033.4384.1prot_H-elongata_contig171033.4384.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171033 410..736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171033.4384.1

>prot_H-elongata_contig171033.4384.1 ID=prot_H-elongata_contig171033.4384.1|Name=mRNA_H-elongata_contig171033.4384.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
ESAIKKDKCKICNAKKVVTERKVLEVNITKGMRNGQNITFHGEADEAPGV
IPGDIIFIVEEKEHPVFRRKGADLVIKNLTLVESLCGFDSSITHMDKRTL
RVKSNAGQV
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mRNA from alignment at H-elongata_contig171033:410..736-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171033.4384.1 ID=mRNA_H-elongata_contig171033.4384.1|Name=mRNA_H-elongata_contig171033.4384.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at H-elongata_contig171033:410..736- (Himanthalia elongata Himel1 dioecious)
GAAAGTGCCATCAAGAAGGACAAGTGCAAAATCTGTAATGCCAAAAAGGT TGTAACGGAGCGCAAGGTTTTGGAGGTGAACATCACCAAGGGTATGCGCA ATGGGCAAAATATCACTTTCCACGGCGAGGCGGACGAGGCTCCTGGCGTA ATCCCCGGCGACATCATCTTTATTGTCGAGGAGAAGGAGCACCCGGTCTT CCGGCGCAAGGGCGCGGACTTGGTAATCAAGAATCTTACTCTGGTGGAAT CCCTTTGTGGCTTCGACTCCTCGATCACTCACATGGACAAGCGAACTCTC CGGGTGAAGAGCAACGCCGGACAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig171033:410..736-

>mRNA_H-elongata_contig171033.4384.1 ID=mRNA_H-elongata_contig171033.4384.1|Name=mRNA_H-elongata_contig171033.4384.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig171033:410..736- (Himanthalia elongata Himel1 dioecious)
GAAAGTGCCATCAAGAAGGACAAGTGCAAAATCTGTAATGCCAAAAAGGT
TGTAACGGAGCGCAAGGTTTTGGAGGTGAACATCACCAAGGGTATGCGCA
ATGGGCAAAATATCACTTTCCACGGCGAGGCGGACGAGGCTCCTGGCGTA
ATCCCCGGCGACATCATCTTTATTGTCGAGGAGAAGGAGCACCCGGTCTT
CCGGCGCAAGGGCGCGGACTTGGTAATCAAGAATCTTACTCTGGTGGAAT
CCCTTTGTGGCTTCGACTCCTCGATCACTCACATGGACAAGCGAACTCTC
CGGGTGAAGAGCAACGCCGGACAGGTGGAAAGTGCCATCAAGAAGGACAA
GTGCAAAATCTGTAATGCCAAAAAGGTTGTAACGGAGCGCAAGGTTTTGG
AGGTGAACATCACCAAGGGTATGCGCAATGGGCAAAATATCACTTTCCAC
GGCGAGGCGGACGAGGCTCCTGGCGTAATCCCCGGCGACATCATCTTTAT
TGTCGAGGAGAAGGAGCACCCGGTCTTCCGGCGCAAGGGCGCGGACTTGG
TAATCAAGAATCTTACTCTGGTGGAATCCCTTTGTGGCTTCGACTCCTCG
ATCACTCACATGGACAAGCGAACTCTCCGGGTGAAGAGCAACGCCGGACA
GGTG
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