prot_H-elongata_contig17103.4383.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17103.4383.1
Unique Nameprot_H-elongata_contig17103.4383.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length288
Homology
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BLAST of mRNA_H-elongata_contig17103.4383.1 vs. uniprot
Match: D7FTH3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH3_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.080e-6
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0 
Query:    1 MSGVVSKKCGNDGCVKQPSYGVAGSKKPMYCAVHSFEGMVN 41
            M  +VSK+CG+ GC+K PS+G  GSK+P  CA HS EGMVN
Sbjct:    1 MIDLVSKRCGHPGCMKHPSHGKDGSKRPEICAQHSQEGMVN 41
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17103.4383.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTH3_ECTSI2.080e-660.98EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17103contigH-elongata_contig17103:3010..3873 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17103.4383.1mRNA_H-elongata_contig17103.4383.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17103 2968..4434 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17103.4383.1 ID=prot_H-elongata_contig17103.4383.1|Name=mRNA_H-elongata_contig17103.4383.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=288bp
MSGVVSKKCGNDGCVKQPSYGVAGSKKPMYCAVHSFEGMVNVINKRCSSD
GCFKQPRYGATGSKKAEYCAMHALEGMIDIRKKICAKDGCFTHPSYGLAG
SRKAEYCVEHALRAMVYVASKRCACDGCFKNPSYGMAGGKKAEYCAVHAL
EGMVDVVSKRCACDGCFKQPSYGLAGSKKAEYCAVHALEGMIAVQRNICV
SDGCVKRPRYGEADRKKAEYCGIHALEGMIDVASKRCAKDGCFKRPSYCV
AGSKKAEYCAIHALKGMMDALRVRVMAYPAARMRIAV*
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