mRNA_H-elongata_contig17103.4383.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17103.4383.1
Unique NamemRNA_H-elongata_contig17103.4383.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17103.4383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17103contigH-elongata_contig17103:2968..4434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1467
Cds size864
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17103.4383.1prot_H-elongata_contig17103.4383.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17103 3010..3873 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.557343-UTR-H-elongata_contig17103:2967..30091622929995.557343-UTR-H-elongata_contig17103:2967..3009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17103 2968..3009 +
1691679239.1927812-UTR-H-elongata_contig17103:2967..30091691679239.1927812-UTR-H-elongata_contig17103:2967..3009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17103 2968..3009 +
1622929995.584485-UTR-H-elongata_contig17103:3873..44341622929995.584485-UTR-H-elongata_contig17103:3873..4434Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17103 3874..4434 +
1691679239.215879-UTR-H-elongata_contig17103:3873..44341691679239.215879-UTR-H-elongata_contig17103:3873..4434Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17103 3874..4434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.5737646-CDS-H-elongata_contig17103:3009..38731622929995.5737646-CDS-H-elongata_contig17103:3009..3873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17103 3010..3873 +
1691679239.2030036-CDS-H-elongata_contig17103:3009..38731691679239.2030036-CDS-H-elongata_contig17103:3009..3873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17103 3010..3873 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17103.4383.1

>prot_H-elongata_contig17103.4383.1 ID=prot_H-elongata_contig17103.4383.1|Name=mRNA_H-elongata_contig17103.4383.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=288bp
MSGVVSKKCGNDGCVKQPSYGVAGSKKPMYCAVHSFEGMVNVINKRCSSD
GCFKQPRYGATGSKKAEYCAMHALEGMIDIRKKICAKDGCFTHPSYGLAG
SRKAEYCVEHALRAMVYVASKRCACDGCFKNPSYGMAGGKKAEYCAVHAL
EGMVDVVSKRCACDGCFKQPSYGLAGSKKAEYCAVHALEGMIAVQRNICV
SDGCVKRPRYGEADRKKAEYCGIHALEGMIDVASKRCAKDGCFKRPSYCV
AGSKKAEYCAIHALKGMMDALRVRVMAYPAARMRIAV*
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mRNA from alignment at H-elongata_contig17103:2968..4434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17103.4383.1 ID=mRNA_H-elongata_contig17103.4383.1|Name=mRNA_H-elongata_contig17103.4383.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1467bp|location=Sequence derived from alignment at H-elongata_contig17103:2968..4434+ (Himanthalia elongata Himel1 dioecious)
AGATTATTTTCAACATTCGTGCGGCGCCTACTCTTAAGAGGAATGAGTGG
CGTTGTGAGCAAGAAGTGTGGTAACGATGGATGCGTTAAGCAACCGAGCT
ATGGCGTGGCAGGAAGCAAGAAGCCGATGTACTGCGCGGTGCATTCTTTC
GAAGGGATGGTCAACGTTATTAACAAAAGGTGTTCAAGTGATGGATGTTT
TAAACAACCGCGTTACGGCGCGACCGGCAGCAAGAAAGCGGAATACTGCG
CAATGCATGCTTTAGAGGGGATGATCGACATTAGGAAAAAGATATGTGCT
AAAGATGGATGCTTTACACATCCGAGTTATGGCCTGGCCGGTAGTAGGAA
AGCGGAATACTGCGTAGAGCATGCTTTAAGAGCAATGGTCTACGTCGCGT
CCAAGAGGTGTGCTTGTGATGGATGCTTTAAAAATCCGAGTTATGGCATG
GCCGGCGGCAAGAAAGCAGAATACTGCGCAGTGCATGCTTTGGAAGGGAT
GGTCGATGTTGTGTCCAAGAGGTGTGCTTGTGATGGATGTTTTAAGCAAC
CGAGTTATGGCTTGGCCGGCAGCAAGAAAGCAGAATACTGCGCGGTGCAT
GCTTTGGAAGGGATGATCGCAGTTCAGAGGAATATATGTGTTAGCGATGG
ATGCGTTAAGCGTCCGAGATATGGTGAAGCAGACAGGAAGAAAGCGGAAT
ACTGTGGAATTCATGCTTTGGAAGGGATGATCGACGTTGCGAGCAAACGA
TGTGCTAAAGATGGATGCTTTAAGCGTCCGAGTTATTGCGTAGCAGGCAG
CAAGAAAGCAGAGTACTGCGCGATACATGCCTTGAAAGGGATGATGGATG
CGTTAAGGGTCCGAGTTATGGCGTATCCGGCAGCAAGAATGCGGATTGCT
GTGTAATGCATGCTTTGGAAGGGATGATCGACGTTGCGAGCAAGAGTTGT
TCTAGCGATGGATCATTCTTGTCACTGGGCTATGGCGTTGCTGGTATCAA
AATGCCGGAGTCCTGCATGGCGCATGATTTTCACATAATGGCCGACGTAT
ATTACACGAGGTGCGCTATCGGTCAGGAGTTTATCGATTACAAGAATAAT
TGCGTTTGTAACGGATGCTGCAGGAGCGCGGGCGACGATGTTGCCGGTAG
CGCTATGCAGGAGTTTTGCGCTGAAAATTCTTTGGAGGGCATGAATCTTT
CGGCTCCACAAGATCAGGCTACAACCAGGAAGTGAATGCACCAGGAGTAT
TTTTTTTGCAGAGAGAAATGACAAAAAAGGTTAAAAGCTCCGGCAATAAC
GTTGAGTCAAGTCCAGAGAGAGTGAAAATTGATATGTCCCTGTCTCGATC
CTAGTAAAAGAAAACTTTAAAGTTGAAAGTTGCCAAACATCTACTGCAGA
CCATGCGGGGTGTTTGGACCCCAAGGCTGACATTCCTGCAGGGCGTTCTC
AATTAGCATATTGAAAC
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Coding sequence (CDS) from alignment at H-elongata_contig17103:2968..4434+

>mRNA_H-elongata_contig17103.4383.1 ID=mRNA_H-elongata_contig17103.4383.1|Name=mRNA_H-elongata_contig17103.4383.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at H-elongata_contig17103:2968..4434+ (Himanthalia elongata Himel1 dioecious)
ATGAGTGGCGTTGTGAGCAAGAAGTGTGGTAACGATGGATGCGTTAAGCA
ACCGAGCTATGGCGTGGCAGGAAGCAAGAAGCCGATGTACTGCGCGGTGC
ATTCTTTCGAAGGGATGGTCAACGTTATTAACAAAAGGTGTTCAAGTGAT
GGATGTTTTAAACAACCGCGTTACGGCGCGACCGGCAGCAAGAAAGCGGA
ATACTGCGCAATGCATGCTTTAGAGGGGATGATCGACATTAGGAAAAAGA
TATGTGCTAAAGATGGATGCTTTACACATCCGAGTTATGGCCTGGCCGGT
AGTAGGAAAGCGGAATACTGCGTAGAGCATGCTTTAAGAGCAATGGTCTA
CGTCGCGTCCAAGAGGTGTGCTTGTGATGGATGCTTTAAAAATCCGAGTT
ATGGCATGGCCGGCGGCAAGAAAGCAGAATACTGCGCAGTGCATGCTTTG
GAAGGGATGGTCGATGTTGTGTCCAAGAGGTGTGCTTGTGATGGATGTTT
TAAGCAACCGAGTTATGGCTTGGCCGGCAGCAAGAAAGCAGAATACTGCG
CGGTGCATGCTTTGGAAGGGATGATCGCAGTTCAGAGGAATATATGTGTT
AGCGATGGATGCGTTAAGCGTCCGAGATATGGTGAAGCAGACAGGAAGAA
AGCGGAATACTGTGGAATTCATGCTTTGGAAGGGATGATCGACGTTGCGA
GCAAACGATGTGCTAAAGATGGATGCTTTAAGCGTCCGAGTTATTGCGTA
GCAGGCAGCAAGAAAGCAGAGTACTGCGCGATACATGCCTTGAAAGGGAT
GATGGATGCGTTAAGGGTCCGAGTTATGGCGTATCCGGCAGCAAGAATGC
GGATTGCTGTGTAAATGAGTGGCGTTGTGAGCAAGAAGTGTGGTAACGAT
GGATGCGTTAAGCAACCGAGCTATGGCGTGGCAGGAAGCAAGAAGCCGAT
GTACTGCGCGGTGCATTCTTTCGAAGGGATGGTCAACGTTATTAACAAAA
GGTGTTCAAGTGATGGATGTTTTAAACAACCGCGTTACGGCGCGACCGGC
AGCAAGAAAGCGGAATACTGCGCAATGCATGCTTTAGAGGGGATGATCGA
CATTAGGAAAAAGATATGTGCTAAAGATGGATGCTTTACACATCCGAGTT
ATGGCCTGGCCGGTAGTAGGAAAGCGGAATACTGCGTAGAGCATGCTTTA
AGAGCAATGGTCTACGTCGCGTCCAAGAGGTGTGCTTGTGATGGATGCTT
TAAAAATCCGAGTTATGGCATGGCCGGCGGCAAGAAAGCAGAATACTGCG
CAGTGCATGCTTTGGAAGGGATGGTCGATGTTGTGTCCAAGAGGTGTGCT
TGTGATGGATGTTTTAAGCAACCGAGTTATGGCTTGGCCGGCAGCAAGAA
AGCAGAATACTGCGCGGTGCATGCTTTGGAAGGGATGATCGCAGTTCAGA
GGAATATATGTGTTAGCGATGGATGCGTTAAGCGTCCGAGATATGGTGAA
GCAGACAGGAAGAAAGCGGAATACTGTGGAATTCATGCTTTGGAAGGGAT
GATCGACGTTGCGAGCAAACGATGTGCTAAAGATGGATGCTTTAAGCGTC
CGAGTTATTGCGTAGCAGGCAGCAAGAAAGCAGAGTACTGCGCGATACAT
GCCTTGAAAGGGATGATGGATGCGTTAAGGGTCCGAGTTATGGCGTATCC
GGCAGCAAGAATGCGGATTGCTGTGTAA
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