mRNA_H-elongata_contig170939.4381.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170939.4381.1
Unique NamemRNA_H-elongata_contig170939.4381.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig170939.4381.1 vs. uniprot
Match: A0A1Y1MJE9_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1MJE9_PHOPY)

HSP 1 Score: 72.4 bits (176), Expect = 5.930e-13
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   37 IKIHKDNEGTIKMAKNRFSSRRTRYVDIKHHIVRDAINGEVVHIEYVRSGEQHADILTKSVSVKTFE 237
            I I++DN+  I+MA     +RRT+++DIKHH +RD +  E +HI+Y+ S EQ ADILTKS+S+  FE
Sbjct:  912 IVINEDNQSCIRMAST-LETRRTKHIDIKHHYIRDCVESERIHIQYIPSNEQQADILTKSLSLSKFE 977
[Close]
BLAST of mRNA_H-elongata_contig170939.4381.1 vs. uniprot
Match: A0A6H5KQX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.820e-11
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 VKEFMNPPIDVA-IKIHKDNEGTIKMAKNRFSSRRTRYVDIKHHIVRDAINGEVVHIEYVRSGEQHADILTKSVSVKTFEKHAKFL 255
            V  F+ P    A IK+ +DN+G + + +N FSS R++++D++ H +R+      +  EYV +GEQHAD+LTK +  +  E H K L
Sbjct:   19 VLSFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGREKLEYHRKAL 104
[Close]
BLAST of mRNA_H-elongata_contig170939.4381.1 vs. uniprot
Match: A0A6H5JFV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV7_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.160e-11
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    1 VKEFMNPPIDVA-IKIHKDNEGTIKMAKNRFSSRRTRYVDIKHHIVRDAINGEVVHIEYVRSGEQHADILTKSVSVKTFEKHAKFL 255
            V  F+ P    A IK+ +DN+G + + +N FSS R++++D++ H +R+      +  EYV +GEQHAD+LTK +  + FE H K L
Sbjct:  173 VLSFIAPETSEAKIKVLEDNKGALALIENPFSSARSKHIDVRFHYIRELFKSGKITAEYVPTGEQHADMLTKVLGREKFEYHRKAL 258
[Close]
BLAST of mRNA_H-elongata_contig170939.4381.1 vs. uniprot
Match: A0A6H5K3D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 4.150e-11
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 VKEFMNPPIDVA-IKIHKDNEGTIKMAKNRFSSRRTRYVDIKHHIVRDAINGEVVHIEYVRSGEQHADILTKSVSVKTFEKHAKFL 255
            V  F+ P    A IK+ +DN+G + + +N FSS R++++D++ H +R+      +  EYV +GEQHAD+LTK +  +  E H K L
Sbjct:   92 VLSFIGPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFKSGKIIAEYVPTGEQHADMLTKVLGRENLEYHRKAL 177
[Close]
BLAST of mRNA_H-elongata_contig170939.4381.1 vs. uniprot
Match: A0A5N6MP82_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MP82_9ASTR)

HSP 1 Score: 67.0 bits (162), Expect = 4.580e-11
Identity = 31/77 (40.26%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:    7 EFMNPPIDVAIKIHKDNEGTIKMAKNRFSSRRTRYVDIKHHIVRDAINGEVVHIEYVRSGEQHADILTKSVSVKTFE 237
            E +    ++A+ I  DN  TIK++KN     RT+++D++ H +RD +N EVV++E+ +S EQ ADI+TK + ++ FE
Sbjct:  540 EELGEKFEMAVDIWCDNSSTIKLSKNPVMHSRTKHIDVRFHYLRDLVNQEVVNLEFCKSEEQVADIMTKPLKMEMFE 616
[Close]
BLAST of mRNA_H-elongata_contig170939.4381.1 vs. uniprot
Match: A0A6H5KCC0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.930e-10
Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    1 VKEFMNPPIDVA-IKIHKDNEGTIKMAKNRFSSRRTRYVDIKHHIVRDAINGEVVHIEYVRSGEQHADILTKSVSVKTFEKHAKFL 255
            V  F+ P    A IK+ +DN+G   + +N FSS R++++D++ H +R+      +  EYV +GEQHAD+LTK +  +  E H K L
Sbjct:   16 VLSFIAPETSGAKIKVLEDNKGAPALIENPFSSARSKHIDVRFHFIRELFKSGKITEEYVPTGEQHADMLTKVLGREKLEYHRKAL 101
[Close]
BLAST of mRNA_H-elongata_contig170939.4381.1 vs. uniprot
Match: A0A6H5JYZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYZ0_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.340e-10
Identity = 28/73 (38.36%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   37 IKIHKDNEGTIKMAKNRFSSRRTRYVDIKHHIVRDAINGEVVHIEYVRSGEQHADILTKSVSVKTFEKHAKFL 255
            IK+ +DN+G + + +N FSS R++++D++ H +R+      +  EYV +GEQHAD+LTK +  +  + H K L
Sbjct:  107 IKVLEDNKGAVALVENPFSSARSKHIDVRFHFIRELFTSGKITAEYVPTGEQHADMLTKVLGREKLQYHRKAL 179
[Close]
BLAST of mRNA_H-elongata_contig170939.4381.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.720e-10
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 VKEFMNPPIDVA-IKIHKDNEGTIKMAKNRFSSRRTRYVDIKHHIVRDAINGEVVHIEYVRSGEQHADILTKSVSVKTFEKHAKFL 255
            V  F+ P    A IK+ +DN+G + M +N FSS R++++D++ H +R+      +  EYV +GEQHAD+LTK +  +  E H K L
Sbjct:  283 VLSFIAPETSGAKIKVLEDNKGALAMFENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKVLGREKSEYHRKAL 368
[Close]
BLAST of mRNA_H-elongata_contig170939.4381.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.880e-10
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 VKEFMNPPIDVA-IKIHKDNEGTIKMAKNRFSSRRTRYVDIKHHIVRDAINGEVVHIEYVRSGEQHADILTKSVSVKTFEKHAKFL 255
            V  F+ P    A IK+ +DN+G + + +N FSS R++++D++ H +R+      +  EYV +GEQHAD+LTK +  +  E H K L
Sbjct:  320 VLSFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFESGKITAEYVPTGEQHADMLTKVLGREKLEYHRKAL 405
[Close]
BLAST of mRNA_H-elongata_contig170939.4381.1 vs. uniprot
Match: A0A6H5KDZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 6.900e-10
Identity = 29/74 (39.19%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 VKEFMNPPIDVA-IKIHKDNEGTIKMAKNRFSSRRTRYVDIKHHIVRDAINGEVVHIEYVRSGEQHADILTKSV 219
            V  F+ P    A IK+ +DN+G + + +N FSS R++++D++ H +R+      +  EYV +GEQHAD+LTK++
Sbjct:   55 VLSFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFKSGKITAEYVPTGEQHADMLTKAL 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170939.4381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1MJE9_PHOPY5.930e-1350.75Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KQX9_9PHAE1.820e-1138.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFV7_9PHAE3.160e-1139.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3D9_9PHAE4.150e-1138.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5N6MP82_9ASTR4.580e-1140.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCC0_9PHAE1.930e-1038.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYZ0_9PHAE2.340e-1038.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWY8_9PHAE3.720e-1039.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE3.880e-1038.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KDZ6_9PHAE6.900e-1039.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170939contigH-elongata_contig170939:716..970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue6.6e-08
Seed eggNOG ortholog164328.Phyra87290
EggNOG free text desc.Integrase core domain
EggNOG OGs3QGWN@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size243
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.42773-UTR-H-elongata_contig170939:715..7271622929995.42773-UTR-H-elongata_contig170939:715..727Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170939 716..727 +
1691679239.1377287-UTR-H-elongata_contig170939:715..7271691679239.1377287-UTR-H-elongata_contig170939:715..727Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170939 716..727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.444025-CDS-H-elongata_contig170939:727..9701622929995.444025-CDS-H-elongata_contig170939:727..970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170939 728..970 +
1691679239.1501462-CDS-H-elongata_contig170939:727..9701691679239.1501462-CDS-H-elongata_contig170939:727..970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170939 728..970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170939.4381.1prot_H-elongata_contig170939.4381.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170939 728..970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170939.4381.1

>prot_H-elongata_contig170939.4381.1 ID=prot_H-elongata_contig170939.4381.1|Name=mRNA_H-elongata_contig170939.4381.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MNPPIDVAIKIHKDNEGTIKMAKNRFSSRRTRYVDIKHHIVRDAINGEVV
HIEYVRSGEQHADILTKSVSVKTFEKHAKFL
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mRNA from alignment at H-elongata_contig170939:716..970+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170939.4381.1 ID=mRNA_H-elongata_contig170939.4381.1|Name=mRNA_H-elongata_contig170939.4381.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig170939:716..970+ (Himanthalia elongata Himel1 dioecious)
GTCAAAGAGTTCATGAACCCTCCAATCGACGTCGCCATCAAGATACACAA
GGACAACGAAGGCACAATCAAGATGGCGAAAAACCGCTTCAGCAGTCGAC
GAACGAGGTACGTGGACATCAAGCATCACATTGTCCGCGACGCGATCAAT
GGGGAGGTGGTTCACATAGAATACGTTCGGTCCGGTGAACAGCACGCCGA
CATCCTCACAAAGTCCGTAAGCGTCAAGACATTTGAGAAGCACGCGAAAT
TCCTT
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Coding sequence (CDS) from alignment at H-elongata_contig170939:716..970+

>mRNA_H-elongata_contig170939.4381.1 ID=mRNA_H-elongata_contig170939.4381.1|Name=mRNA_H-elongata_contig170939.4381.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig170939:716..970+ (Himanthalia elongata Himel1 dioecious)
ATGAACCCTCCAATCGACGTCGCCATCAAGATACACAAGGACAACGAAGG
CACAATCAAGATGGCGAAAAACCGCTTCAGCAGTCGACGAACGAGGTACG
TGGACATCAAGCATCACATTGTCCGCGACGCGATCAATGGGGAGGTGGTT
CACATAGAATACGTTCGGTCCGGTGAACAGCACGCCGACATCCTCACAAA
GTCCGTAAGCGTCAAGACATTTGAGAAGCACGCGAAATTCCTTATGAACC
CTCCAATCGACGTCGCCATCAAGATACACAAGGACAACGAAGGCACAATC
AAGATGGCGAAAAACCGCTTCAGCAGTCGACGAACGAGGTACGTGGACAT
CAAGCATCACATTGTCCGCGACGCGATCAATGGGGAGGTGGTTCACATAG
AATACGTTCGGTCCGGTGAACAGCACGCCGACATCCTCACAAAGTCCGTA
AGCGTCAAGACATTTGAGAAGCACGCGAAATTCCTT
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