mRNA_H-elongata_contig10529.438.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10529.438.1
Unique NamemRNA_H-elongata_contig10529.438.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10529.438.1 vs. uniprot
Match: D7FJA1_ECTSI (Putative Leucine Rich Repeat Protein Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJA1_ECTSI)

HSP 1 Score: 392 bits (1006), Expect = 5.540e-131
Identity = 197/314 (62.74%), Postives = 232/314 (73.89%), Query Frame = 1
Query:  106 RLAVNPDLAMVPESFAFAERLSWVSLGGTAWCARAAERRRRFPFSVIPREEVVLGEKLGSGASGDVYAAIYNGQNVAVKVFKSDVSPDGNARDELDVACAVDHPNLTKAIGIVRANRSDGGDGDHGVTNSDCR------------------------------INRKQWLVMEKVEGQPLAEKPDLTSVLRCRWEAGRRFESVLVLAVLLQVARAMSYLHEKNICHGDLYAHNVLVDGETGASVLCDFGASFFYQNLSERHDPNGFALEGAEVRAFGIMARDMACRSVGCEWILQDLAPSCIQADTFLRPSFHE 957
            RLAVNP L +VPE   +AE+L+WVSL G+AWCARA+E+RRR  F  IPREEVVLGE+LGSGASG+V+A +Y G++VAVKVFK+D+ PDGNARDELDVA  VDHPNLTK++G+V A+ +         + S+                                I   +WLVME+V G+PLAEKPD +SVLRCRW +GRRFE VLVLAVLLQVARAMSYLHEK ICHGDLYAHNVLVDGETGA+VLCDFGASFFY     +HD +   LEG EVRAFG+M++DMACRS GCEWILQDL PSC+Q+D   RPSFHE
Sbjct:  187 RLAVNPGLTVVPEGLTYAEKLAWVSLAGSAWCARASEKRRRTSFPEIPREEVVLGERLGSGASGEVFAGVYRGRDVAVKVFKADIGPDGNARDELDVALTVDHPNLTKSLGVVHASSTKPSGRSSSGSESEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGIENLRWLVMERVVGRPLAEKPDFSSVLRCRWGSGRRFEPVLVLAVLLQVARAMSYLHEKAICHGDLYAHNVLVDGETGAAVLCDFGASFFYPT-DRQHDCS--MLEGTEVRAFGLMSKDMACRSAGCEWILQDLVPSCLQSDASHRPSFHE 497          
BLAST of mRNA_H-elongata_contig10529.438.1 vs. uniprot
Match: A0A6H5L0B3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B3_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 4.030e-110
Identity = 171/262 (65.27%), Postives = 197/262 (75.19%), Query Frame = 1
Query:  235 FSVIPREEVVLGEKLGSGASGDVYAAIYNGQNVAVKVFKSDVSPDGNARDELDVACAVDHPNLTKAIGIVRANRSDGGDGDHGVTNSDC---------------------RINRKQWLVMEKVEGQPLAEKPDLTSVLRCRWEAGRRFESVLVLAVLLQVARAMSYLHEKNICHGDLYAHNVLVDGETGASVLCDFGASFFYQNLSERHDPNGFALEGAEVRAFGIMARDMACRSVGCEWILQDLAPSCIQADTFLRPSFHE 957
            F  IPREEVVLGE+LGSGASG+V+A +Y G++VAVKVFK+D+ PDGNARDELDVA  VDHPNLTK++G+V A+      G    + S+                       I   +WLVME+V G+PLAEKPD +SVLRCRW +GRRFE VLVLAVLLQVARAMSYLHEK ICHGDLYAHNVLVDGETGA+VLCDFGASFFY     +HD +   LEG EVRAFG+M+RDMACRS GCEWILQDL PSC+Q+D   RPSFHE
Sbjct:   35 FPDIPREEVVLGERLGSGASGEVFAGVYRGRDVAVKVFKADIGPDGNARDELDVALTVDHPNLTKSLGVVHASSIKPSGGSISRSESEVAAXXXXXXXXXXXXXXXXXGDEIENLRWLVMERVVGRPLAEKPDFSSVLRCRWGSGRRFEPVLVLAVLLQVARAMSYLHEKAICHGDLYAHNVLVDGETGAAVLCDFGASFFYPT-DRQHDCS--MLEGTEVRAFGLMSRDMACRSAGCEWILQDLVPSCLQSDASHRPSFHE 293          
BLAST of mRNA_H-elongata_contig10529.438.1 vs. uniprot
Match: A0A5J4XR07_9CHLO (Kinase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XR07_9CHLO)

HSP 1 Score: 196 bits (499), Expect = 1.540e-55
Identity = 119/275 (43.27%), Postives = 158/275 (57.45%), Query Frame = 1
Query:  166 LSWVSLGGTAWCARAAERRRRFPFSVIPR--EEVVLGEKLGSGASGDVYAAIYNGQNVAVKVFKSDVSPDGNARDELDVACAVDHPNLTKAIGIVRANRSDGGDGDHGVTNSDCRINRKQWLVMEKVEGQPLAEKPDLTSVLRCRWEAGRRFESVLVLAVLLQVARAMSYLHEKNICHGDLYAHNVLVDGETGASVLCDFGASFFYQNLSERHDPNGFALEGAEVRAFGIMARDMACR----SVGCEW----ILQDLAPSCI--QADTFLRPSFH 954
            L+W+SL G   C  A   R      ++P    ++ +   LG GASGDV+AA +  ++VA+K+FK++ SPDG+ARDE+ V C VDHPNL K IGI+        D  H              LV+E++ G PLA KP+  S+LRCRW  G+ F +  V  V   VA A+SYLH+ NICHGD+Y HNVL D E G SVLCD+GASFFYQ  S  +       E  EVRA+G++  D+  R    S  C+     ILQ++   CI   A T  RP+F+
Sbjct:  231 LAWLSLAGNPACQPAPPIRP----DILPLTLSQLDIATALGDGASGDVFAAKFQERDVAIKIFKAESSPDGHARDEIAVTCFVDHPNLIKVIGII--------DHPHA-------------LVLERIWGVPLALKPNFESLLRCRWTPGQTFTAAFVWNVAKSVANALSYLHKHNICHGDVYGHNVLAD-EEGNSVLCDYGASFFYQAGSVPY-------EAQEVRAYGLLLHDLVSRLKQASEQCDKDAARILQEIVQQCIGNTASTTQRPTFY 472          
BLAST of mRNA_H-elongata_contig10529.438.1 vs. uniprot
Match: A0A8J9S5V3_9CHLO (Probable leucine-rich repeat-containing protein 7 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S5V3_9CHLO)

HSP 1 Score: 190 bits (483), Expect = 3.840e-53
Identity = 112/268 (41.79%), Postives = 145/268 (54.10%), Query Frame = 1
Query:  166 LSWVSLGGTAWCARAAERRRRFPFSVIPREEVVLGEKLGSGASGDVYAAIYNGQNVAVKVFKSDVSPDGNARDELDVACAVDHPNLTKAIGIVRANRSDGGDGDHGVTNSDCRINRKQWLVMEKVEGQPLAEKPDLTSVLRCRWEAGRRFESVLVLAVLLQVARAMSYLHEKNICHGDLYAHNVLVDGETGASVLCDFGASFFYQNLSERHDPNGFALEGAEVRAFGIMARDMACRSVGCEWI------LQDLAPSCIQADTFLRPSF 951
            L+W+SL G   C     R      + +  E + LG  LG GASGDV+AA   G+ VAVKVFK +VSPDG A DE+ V C V+HP+LT+ +  ++                     +   LV+++V G+PLA KP+L S+LRCRW     F S  V  V L VA A+ YLH   ICHGD+YAHN+LVD E G + L D+GASFFY+       P     E  EVRAFG+   DM  R  G +        L+D+A   +  D   RPSF
Sbjct:  219 LAWMSLAGNPACPPPPVRGH---IADVTIEHLSLGVPLGEGASGDVFAAHMEGEEVAVKVFKGEVSPDGKAADEIAVTCYVNHPHLTRVLATLQ---------------------QPHALVLKRVAGRPLAAKPNLQSLLRCRWPPDAAFSSAFVARVALCVASALQYLHAHCICHGDVYAHNILVDNE-GHATLLDYGASFFYK-------PGTLPYEAQEVRAFGLFLSDMLARVEGADKASSVRAGLEDIAAGALHKDPLGRPSF 454          
BLAST of mRNA_H-elongata_contig10529.438.1 vs. uniprot
Match: A0A7S1CVX0_9CHLO (Hypothetical protein n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CVX0_9CHLO)

HSP 1 Score: 188 bits (477), Expect = 1.380e-51
Identity = 118/319 (36.99%), Postives = 172/319 (53.92%), Query Frame = 1
Query:   28 KLQMSFN-NLRSLPMGMEGMRSLELFRRLAVNPDLAMVPESFAFAERLSWVSLGGTAWCARAAERRRRFPFSVIPREEVVLGEKLGSGASGDVYAAIYNGQNVAVKVFKSDVSPDGNARDELDVACAVDHPNLTKAIGIVRANRSDGGDGDHGVTNSDCRINRKQWLVMEKVEGQPLAEKPDLTSVLRCRWEAGRRFESVLVLAVLLQVARAMSYLHEKNICHGDLYAHNVLVDGETGASVLCDFGASFFYQNLSERHDPNGFALEGAEVRAFGIMARDMACR----------SVGCEWILQDLAPSCIQADTFLRPSF 951
            K+Q+S N  L+ LP  +  +  LELFR  A   DL  +PES   A  LSW+S+ G       A   ++     +  ++V++G+KLG GASG+V+   Y  + VAVK+F+ D SPDG+  DE+ +AC +   NL   +  +          DH              +VME VEG PLA KP+  SVLRCRW+ G+ F    VL  L  V+ A+ ++H K I HGD+YAHNVL   + G S+LCD+GA+F YQ  +++H       E  +VRAFG++ RD+  R          ++ C+  L  ++  C+  D   RP+F
Sbjct:  232 KIQLSHNATLKHLPENIGQLSRLELFR--AACCDLQHIPESLMNAHSLSWLSIAGNP----LAGSLKKPSAPCVSIDDVMVGKKLGDGASGEVFEGEYKKKQVAVKLFRKDTSPDGHCEDEIAIACMLHDDNLVNVLARI----------DHPHLG----------VVMEYVEGSPLALKPNKDSVLRCRWKEGQLFPISFVLRCLSSVSGALEHMHAKGIAHGDVYAHNVLARDD-GTSILCDYGAAFAYQRSNKQHG----LFELHDVRAFGLLVRDLIERVDISFADMETAIDCQKQLLIISQQCLAVDPHKRPTF 519          
BLAST of mRNA_H-elongata_contig10529.438.1 vs. uniprot
Match: I0Z463_COCSC (L domain-like protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z463_COCSC)

HSP 1 Score: 177 bits (449), Expect = 1.020e-48
Identity = 109/267 (40.82%), Postives = 138/267 (51.69%), Query Frame = 1
Query:  169 SWVSLGGTAWCARAAERRRRFPFSVIPREEVVLGEKLGSGASGDVYAAIYNGQNVAVKVFKSDVSPDGNARDELDVACAVDHPNLTKAIGIVRANRSDGGDGDHGVTNSDCRINRKQWLVMEKVEGQPLAEKPDLTSVLRCRWEAGRRFESVLVLAVLLQVARAMSYLHEKNICHGDLYAHNVLVDGETGASVLCDFGASFFYQNLSERHDPNGFALEGAEVRAFGIMARDMACR------SVGCEWILQDLAPSCIQADTFLRPSF 951
            +W+SL G   C +   R + FP   I  +++ LG  LG GASGDVYAA    ++VAVKVFK +VSPDG A DE+ V C VDHP+LT+                                   +V+GQPLA KP+L S+LRCRW  G  F    V  V L VA A+ YLH   ICHGD+YAHN+LV  + G + L D+GASFFY+       P     E  EVRAFG+   DM  R             L+++    +Q D   RPSF
Sbjct:  189 AWMSLAGNPICPQTPVRGQ-FPAMTI--DQLSLGVSLGEGASGDVYAAKLGAEDVAVKVFKGEVSPDGRAADEIAVTCYVDHPHLTR-----------------------------------RVQGQPLAGKPNLQSLLRCRWPPGSAFSPGFVARVALCVASALQYLHAHCICHGDVYAHNILVAAD-GHATLLDYGASFFYK-------PGTLPYEAQEVRAFGLFLNDMLARLEAPDKPSAVRSSLEEITADALQRDPSCRPSF 409          
BLAST of mRNA_H-elongata_contig10529.438.1 vs. uniprot
Match: A0A836C659_9CHLO (Protein kinase domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C659_9CHLO)

HSP 1 Score: 176 bits (445), Expect = 2.870e-47
Identity = 103/274 (37.59%), Postives = 143/274 (52.19%), Query Frame = 1
Query:  163 RLSWVSLGGTAWCARAAERRRRFPFSVIPREEVVLGEKLGSGASGDVYAAIYNGQNVAVKVFKSDVSPDGNARDELDVACAVDHPNLTKAIGIVRANRSDGGDGDHGVTNSDCRINRKQWLVMEKVEGQPLAEKPDLTSVLRCRWEAGRRFESVLVLAVLLQVARAMSYLHEKNICHGDLYAHNVLVDGETGASVLCDFGASFFYQNLSERHDPNGFALEGAEVRAFGIMARDMACR-------SVGCEWILQD----LAPSCIQADTFLRPSF 951
            RL+W S+ G   C          P   + REE+ LG+KLG GASGDV+ A++ G+ VAVK F++DVSPDG   DE+ +A A+ HP+LT+ +G                     R+     LV+    G+PLA KP    +LRC+W    RF     LA+  +VA A+ Y H   +CHGD+YAHNVL+D E G+  LCDFGAS+ Y    +         E  EVRA+G++ RD+  R       + G    + D    LA  C++     RP+F
Sbjct:  264 RLAWFSVAGNPACPDPPPPAPGLPL--VAREELELGQKLGDGASGDVFRAVWRGELVAVKFFRADVSPDGRTEDEVALAIALQHPHLTQVLG---------------------RVEHPSGLVLRLESGKPLAHKPTSAHLLRCKWADETRFPLPRALALAARVADALRYCHAAGVCHGDVYAHNVLMD-EDGSVTLCDFGASYSYDRTRQPF------WEAMEVRAYGLLLRDVVARCDPPASAAAGAAAAVVDGLRALAERCVELAPAQRPTF 507          
BLAST of mRNA_H-elongata_contig10529.438.1 vs. uniprot
Match: A0A150GRA6_GONPE (Protein kinase domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GRA6_GONPE)

HSP 1 Score: 172 bits (435), Expect = 2.370e-46
Identity = 106/269 (39.41%), Postives = 141/269 (52.42%), Query Frame = 1
Query:  163 RLSWVSLGGTAWCARAAERRRRFPFSVIPREEVVLGEKLGSGASGDVYAAIYNGQNVAVKVFKSDVSPDGNARDELDVACAVDHPNLTKAIGIVRANRSDGGDGDHGVTNSDCRINRKQWLVMEKVEGQPLAEKPDLTSVLRCRWEAGRRFESVLVLAVLLQVARAMSYLHEKNICHGDLYAHNVLVDGETGASVLCDFGASFFYQNLSERHDPNGFALEGAEVRAFGIMARDMA--CRSVGCE----WILQDLAPSCIQADTFLRPSF 951
            RL+W S+ G   C     R    P   +  +E+ LG+KLG GASG+VY AI+ G+ VAVK F+SDVSPDG   DE+ +A A+ HP++T+ +  VR          HG             LV+  V G PLA KP    +LRC+W    +F     + +   VA A+ + HE  ICHGD+YAHNVL+D +   + +CDFGASF Y   S+         E  EVRA+G+M RD+   C  V         L+ LA  C Q     RPSF
Sbjct:  193 RLAWFSVAGNPACPEPPAREAVLPE--VDEDELELGQKLGDGASGEVYRAIWKGELVAVKFFRSDVSPDGRTEDEVALAIALQHPHVTQVLAKVRY--------PHG-------------LVLRLVTGTPLAHKPTSAHLLRCKWGGDVQFPLRRAMRLATAVADALQHCHEVGICHGDVYAHNVLMDEDENVT-MCDFGASFSYDRKSQPF------WEAMEVRAYGLMLRDVVDRCDDVAAPAEVATALRRLAERCTQLAPAQRPSF 431          
BLAST of mRNA_H-elongata_contig10529.438.1 vs. uniprot
Match: A0A250XG00_9CHLO (Protein kinase domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XG00_9CHLO)

HSP 1 Score: 173 bits (438), Expect = 8.670e-46
Identity = 98/233 (42.06%), Postives = 134/233 (57.51%), Query Frame = 1
Query:  166 LSWVSLGGTAWCARAAERRRRFPFSVIPREEVVLGEKLGSGASGDVYAAIYNGQNVAVKVFKSDVSPDGNARDELDVACAVDHPNLTKAIGIVRANRSDGGDGDHGVTNSDCRINRKQWLVMEKVEGQPLAEKPDLTSVLRCRWEAGRRFESVLVLAVLLQVARAMSYLHEKNICHGDLYAHNVLVDGETGASVLCDFGASFFYQNLSERHDPNGFALEGAEVRAFGIMARDM 864
            L+W SLGG   C R   + R    S+   +  +L EKLG GASG+V  A Y G+ VAVK F+SDVSPDG   +E+ +AC VDHPNLT+ +  V++          G T++   +     +VME   G PLA KP    +LRC+W+  +         V L V+ A++YLH   ICHGD+YAHN+LVD   G +++CDFGASF Y+         GF  +  EVRAFG+  +D+
Sbjct:  308 LAWFSLGGNLAC-RQMPKPRPDVVSIAMEDIQLLNEKLGDGASGEVLRASYQGREVAVKSFRSDVSPDGRTAEEVAIACHVDHPNLTRVLATVQS---------AGQTSAPNSVAAVIAVVMEIYNGAPLAAKPTSEHLLRCKWDPNKSISCGYAHKVALGVSSALAYLHGLFICHGDVYAHNILVD-TAGKAIVCDFGASFCYEE-----GQRGF-WQSMEVRAFGLFLQDL 523          
BLAST of mRNA_H-elongata_contig10529.438.1 vs. uniprot
Match: A0A2K3DNM2_CHLRE (Protein kinase domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DNM2_CHLRE)

HSP 1 Score: 171 bits (433), Expect = 2.210e-45
Identity = 97/238 (40.76%), Postives = 129/238 (54.20%), Query Frame = 1
Query:  163 RLSWVSLGGTAWCARAAERRRRFPFSVIPREEVVLGEKLGSGASGDVYAAIYNGQNVAVKVFKSDVSPDGNARDELDVACAVDHPNLTKAIGIVRANRSDGGDGDHGVTNSDCRINRKQWLVMEKVEGQPLAEKPDLTSVLRCRWEAGRRFESVLVLAVLLQVARAMSYLHEKNICHGDLYAHNVLVDGETGASVLCDFGASFFYQNLSERHDPNGFALEGAEVRAFGIMARDMACRS 876
            RL+W S+ G   C          P  V+  EE+ LG+KLG GASGDVY A++ GQ VAVK F++DVSPDG   DE+ +A ++ HP+LT+ +                      R+ +   LV+    G PLA KP    +LRC+W    RF     L +   VA A+ Y H   ICHGD+YAHNVL+D E G   LCDFGASF Y   ++         E  EVRA+G+M +D+A R+
Sbjct:  271 RLAWFSVAGNPVCPGPPAPAPGLP--VVAPEELELGQKLGDGASGDVYRAVWRGQLVAVKYFRADVSPDGRTEDEVALAVSLQHPHLTQVL---------------------ARVEKPHGLVLRLEAGSPLAAKPTSQHLLRCKWGDDVRFPPRRALGLAAAVADALRYCHAAGICHGDVYAHNVLMD-ENGTVTLCDFGASFSYDRAAQPF------WEAMEVRAYGLMLKDVADRA 478          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10529.438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJA1_ECTSI5.540e-13162.74Putative Leucine Rich Repeat Protein Kinase n=1 Ta... [more]
A0A6H5L0B3_9PHAE4.030e-11065.27Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A5J4XR07_9CHLO1.540e-5543.27Kinase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 Re... [more]
A0A8J9S5V3_9CHLO3.840e-5341.79Probable leucine-rich repeat-containing protein 7 ... [more]
A0A7S1CVX0_9CHLO1.380e-5136.99Hypothetical protein n=1 Tax=Picochlorum oklahomen... [more]
I0Z463_COCSC1.020e-4840.82L domain-like protein n=1 Tax=Coccomyxa subellipso... [more]
A0A836C659_9CHLO2.870e-4737.59Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A150GRA6_GONPE2.370e-4639.41Protein kinase domain-containing protein n=1 Tax=G... [more]
A0A250XG00_9CHLO8.670e-4642.06Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A2K3DNM2_CHLRE2.210e-4540.76Protein kinase domain-containing protein n=2 Tax=C... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10529contigH-elongata_contig10529:4081..8471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score176.0
Seed ortholog evalue2.8e-41
Seed eggNOG ortholog248742.XP_005649976.1
EggNOG free text desc.Protein kinase domain
EggNOG OGs34I0K@3041,37VMG@33090,COG4886@1,KOG0619@2759
COG Functional cat.T
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPutative Leucine Rich Repeat Protein Kinase
Ec32 orthologEc-12_008310.1
Exons6
Model size957
Cds size957
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10529.438.1prot_H-elongata_contig10529.438.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10529 4081..8471 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929585.1262383-CDS-H-elongata_contig10529:4080..41371622929585.1262383-CDS-H-elongata_contig10529:4080..4137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10529 4081..4137 -
1691679080.4086668-CDS-H-elongata_contig10529:4080..41371691679080.4086668-CDS-H-elongata_contig10529:4080..4137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10529 4081..4137 -
1622929585.1461542-CDS-H-elongata_contig10529:4767..50191622929585.1461542-CDS-H-elongata_contig10529:4767..5019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10529 4768..5019 -
1691679080.4197454-CDS-H-elongata_contig10529:4767..50191691679080.4197454-CDS-H-elongata_contig10529:4767..5019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10529 4768..5019 -
1622929585.1616597-CDS-H-elongata_contig10529:5896..62021622929585.1616597-CDS-H-elongata_contig10529:5896..6202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10529 5897..6202 -
1691679080.4290676-CDS-H-elongata_contig10529:5896..62021691679080.4290676-CDS-H-elongata_contig10529:5896..6202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10529 5897..6202 -
1622929585.1879764-CDS-H-elongata_contig10529:7097..72121622929585.1879764-CDS-H-elongata_contig10529:7097..7212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10529 7098..7212 -
1691679080.4379215-CDS-H-elongata_contig10529:7097..72121691679080.4379215-CDS-H-elongata_contig10529:7097..7212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10529 7098..7212 -
1622929585.2065234-CDS-H-elongata_contig10529:7977..81001622929585.2065234-CDS-H-elongata_contig10529:7977..8100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10529 7978..8100 -
1691679080.447568-CDS-H-elongata_contig10529:7977..81001691679080.447568-CDS-H-elongata_contig10529:7977..8100Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10529 7978..8100 -
1622929585.2277915-CDS-H-elongata_contig10529:8367..84711622929585.2277915-CDS-H-elongata_contig10529:8367..8471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10529 8368..8471 -
1691679080.456926-CDS-H-elongata_contig10529:8367..84711691679080.456926-CDS-H-elongata_contig10529:8367..8471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10529 8368..8471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10529.438.1

>prot_H-elongata_contig10529.438.1 ID=prot_H-elongata_contig10529.438.1|Name=mRNA_H-elongata_contig10529.438.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=319bp
QIVKLRRLKKLQMSFNNLRSLPMGMEGMRSLELFRRLAVNPDLAMVPESF
AFAERLSWVSLGGTAWCARAAERRRRFPFSVIPREEVVLGEKLGSGASGD
VYAAIYNGQNVAVKVFKSDVSPDGNARDELDVACAVDHPNLTKAIGIVRA
NRSDGGDGDHGVTNSDCRINRKQWLVMEKVEGQPLAEKPDLTSVLRCRWE
AGRRFESVLVLAVLLQVARAMSYLHEKNICHGDLYAHNVLVDGETGASVL
CDFGASFFYQNLSERHDPNGFALEGAEVRAFGIMARDMACRSVGCEWILQ
DLAPSCIQADTFLRPSFHE
back to top

mRNA from alignment at H-elongata_contig10529:4081..8471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10529.438.1 ID=mRNA_H-elongata_contig10529.438.1|Name=mRNA_H-elongata_contig10529.438.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4391bp|location=Sequence derived from alignment at H-elongata_contig10529:4081..8471- (Himanthalia elongata Himel1 dioecious)
CAGATCGTCAAGCTTCGCCGTCTAAAGAAGCTCCAAATGTCGTTCAACAA CTTGCGCTCGCTGCCAATGGGGATGGAGGGGATGCGCAGCCTCGAGCTTT TCAGGTGTAACTCGTAATACATCCTCCACGGCCTCCTTCTCTTCCCCCCC CCCGCCTGTTTTCGCCATCGTTTGCGGGTTTCCCGGAGGCGTTAGGAGCA TAGAAATTAGCGTTCATTAGATAGTCGTGACCAGTCGTGATGGGTCCTTG TAAGTCGGTGTTATAAAATATTGATGTCGCACTATCCTAGCTGTTATTAT CGAGATATCGTCAATCGAGACCTTCGTCTTAGCGGCCTCACGCGTGTGCC CCAACTTTCCCTTGCGTTGAGAAGGTTGGCGGTTAACCCAGACTTGGCGA TGGTGCCTGAAAGTTTTGCCTTCGCCGAGCGCCTGTCATGGGTATCCCTA GGAGGCACTGCCTGGTGCGCTCGAGCCGCGGAAAGGCGTCGCAGGTGATA ACCTGGAGATTGTGTACGGTGGGTCCGACGTCAGCGCGCACATGTTTTGA GTCTCGCGCGTCGTTGGTTATCACATGAAGCTGGGGAGGGGGTTCCTGCG ATGTGGAACGCATTTTACCAGAACTCCTCTACATTTTGAAGGCACAATAG CTAGCGTCAGGGTGCTTGGGCTCTTTCTAACCTTGCGCGGTCGTGTCCTG CTTCACAATATATCTGGAGGGATGTCGCGGGCGAGGCGCGGCGCGGCGTT GTAGTTTGCTCGTGGGACACGGGTAGTTCAGTCTTCGCCGACGCAGGGGG GAGGCATGCGAGCAGCGTGTGTTAGAGCTAGGTCCTCGAGTCGGATTCCG ATCCCCCCTCAGCGCGTCCCCGCTGGCCACGAGGACGAATCGGTTTTATC CCTCAGTTTCCAGGCGCGCCTCGGTTGACCGTCTCTCTATCTCTCCCTCT CTCGAGAGAGGCGTTCAAATTACAATTGATAGTTTACCGACATAGGTCGG GAGAAGTGCAACGGTCGCCGCTGATTTGCACGCGATGATAACACACCCGC GCGCAGCGCCGATGTTGGCGTTTTGGTTGACCCCGCCGCCACGGTCGCCA CCGTTCTGACTCCCCACCCTCTGAAACCGCTCGGGCGCTAAACGGCTCGG CGCCCTTTAGGCTAATGTATCACTTGTCTTACGCGTGATACGCTGTGAAT CTTCCCGCTCTTTTCCTCGCACCATTCATTCCCTTACGGGTCCGACGCCT CCTGTGAAGGTTCCCTTTCTCAGTCATTCCCCGGGAAGAGGTGGTGCTCG GGGAGAAGCTTGGGAGCGGAGCGTCGGGAGACGTGTACGCCGCTATCTAC AATGGGCAGAACGTGGCCGTGAAGGTGCCTTCACTGCGGGAGAATCTCTC TCGGCAGCAACGAGGGCGTGGAGTTTTCCCTTCATGTTCAATGTGACGCT TCTCAGTTCTTAGTTCTTTAGTTTTGGAGTGGGCAAGGTCGTGGTTGTTA CGTTTTCGAGGCTTGTGTCTTGGCAATATTCATATTACGGTATCAGATTG CGGCACTCTTACCTTATCGCGGCACTCTTACCTTACATTCCCCCGTTTCT ATCTGGGTGAGTTTGAACGTATCCCCTTCCGTGTCTTTCTCCTCCTCCCC TATGGGATTGTAGATATTGACATGACATCCGATAACGTAGACGGAGATTT AGGACATGGGTAAATAAGGTAAATAAGGTAGACGAGGACAAGTACAAATA TGACTGCGGCTCGGATCAGTGTCGAGACCATATCCACGTATTGTTGTCGT GTTGTTGTGTAGCAGAATTGTCATTGTATTAAAAGTAAAGAGAACTTTGT ATGTCTGAAGAGTAGGAAAAGTTGAAGCGTAATAGAGACACTTTTGAAAA ATGGGACAGCGAGATAAAAGTGGTAGTTATACTTGGGGGGATAAAAATTG ATAAAAATTGATGATGGTGTGGACTGAGAAGGCGAAAAGTGATAAAAAGT GATGATGGTGTGGACAGAGAAGGCGAAAAGTGATAAAAAGTGATGATTGT GTGGACAGGACAAAACAAGAAGAAAAAAGCTCCACCTTCGGCAAACTAGG AATGAACTAATAAATTAATTAAGGAACGATTGGCCACCGGCGAACGATCG ATCATGTAGGAACAATGTTTCATCCTCCATCCCGAGGACGCGTGGTAGTG ACCAATGGTAATGGTCTAACAGCCAAAGATGTAATATTTTAGACCCCCCC CCCTATCTTCCCATGGAAGGTGTTCAAGTCCGACGTAAGCCCTGACGGCA ACGCCCGCGACGAGCTGGACGTGGCCTGCGCCGTTGACCACCCGAACTTG ACCAAGGCTATCGGCATCGTTCGTGCCAACCGCAGCGACGGCGGTGATGG TGACCATGGGGTGACGAATAGCGACTGCCGCATCAACAGAAAGCAGTGGC TGGTGATGGAGAAGGTGGAGGGACAGCCGCTGGCGGAGAAGCCCGACTTG ACGAGCGTGCTGCGGTGTCGGTGGGAAGCGGGGAGGAGGTTCGAGTCCGT TTTGGTCCTGGCGGTATTGCTGCAGGTGGATATCATCATTATTATTATTA TTATTATTATTTAAGGATGGATGTTGACATATAGTCTACACATGATCACA CCTTAAAGCGTCTAGAAAGTGCATTTATTAAGTTGCACATGACCGCGCAA TTCGGCCCTGTCATATTATCAATAGATATTCTTCTTAAAAACATCCTATG AACTCTTTCAAACCCTTCGAACATCCACACCTTATTTACACCGTGAGAGG TAGTCATAGTCATTATATGCAACTTGCAATGGTCCTCCCAATGATACCTA TTAGTATAATCAATGTTTCGAAAAGCTATGGTCATACGTGGCAAAGAGGA CTATGATCATCCTCTTCCGACATATATGTGTGTGTGTATTTAATTGTTTG GTTATAATGGATGTGTAGCCCCTTACTCTCCTTTTGGTTTTGCTATATTG GGAGGCGTTCTGGTATACTCTCTGTCGCCCATAATTTCGAAGCAGGCTAG AGCAACCTGCTATTGACCCACAACCAATGTATGCTGTCGATAAATCCGAA CGAGGTCAGTAGGTGATGAACAGGTATCCACCTCGGTCGCCGTCCCGCGT CCCTTCCGTTGCTTGCGAAGTGTGAAATAGCGATCGGAGCTCGTACCGCT CATACCCTGGAGTAATAAACACTATATAGCTCTATACAACTCCTTTCGAT TTGGTCATTTGGAGCCTTGATCTTAGAGAAGTACTGTCATCACACGCTGG CTCCGACGCGCCATTGACATTCGCCATTGACATTCTTATCTCATCAGCAA GAGTACGGCTCCGCGAGGTCTGAGTTTTCTAACTGTTTGAACGTGATTTA TCCGGGGATTTTTTTTATCAATGTCCCTTTCCCTTTTTTACCGCCTTCGA AGGTGGCGAGGGCGATGTCCTATCTTCACGAGAAGAACATCTGCCACGGG GACCTTTACGCTCATAATGTGCTGGTGGACGGTGAGACGGGTGCGAGCGT CCTGTGCGACTTCGGCGCCAGCTTTTTTTATCAGAACCTTTCGGAGAGAC ACGACCCCAACGGCTTCGCGCTAGAGGGGGCAGAGGTCCGGGCCTTTGGG ATTATGGCGAGGGACATGGCATGTCGCAGCGTGGGCTGCGAGTGGATTTT GCAGGTATTATACCCCCCCCCCCTCGACTAAGCTCAAAATAAGTGCAAGC ACACGCTCATGGTGGCGTTACAAGTATATTTCCTGTGTTACCATCATCCG GTTGCGAGCGCCCGGAGAGCGCGATGTTGTATATATATATATATATTAGA TATAATAAGTTGCTTGCCTCCGGTAAAGTGTAAATCAGGAATTATTATCG TGAAGTAGTGATACCTCATTTTCTGTGCTTGATGTCGTTTTGGAAAATCG CTAGAAACCCCGAGAATAACCATTTCATGGGTGACGTAGAGAATTGTAGT GTAGGCAAAACGGGGGGGGGGTAGGACAGCGCTTTTTCGGTGATACAAAA AACGTGATTTATTACGTGGTTAGGCCGCGCTCTGAAAACCCATGCTTGGC TGGTAAAAGAGGCCCATTAGTAACTGATTCGGAGTTCAATATCCAGTAAA ACAGATTCTCTGGGAGGGAAATGGAATCAAGGGGAAGGACAGGGGACAAT GTGGAGAAATATCCCCGCCCAGACATGCTGCGAGTGAAGAACAAGGTGCT TCTCTGTAGCGTATTTATTCCACCCAACATAATTTGTTTCGGCATCTCCC CAACCGTGAAATCTTTAAATCGTTACTCTTCCAGGACCTGGCGCCGTCCT GTATTCAAGCGGATACGTTTCTTCGCCCTTCATTTCACGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig10529:4081..8471-

>mRNA_H-elongata_contig10529.438.1 ID=mRNA_H-elongata_contig10529.438.1|Name=mRNA_H-elongata_contig10529.438.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1914bp|location=Sequence derived from alignment at H-elongata_contig10529:4081..8471- (Himanthalia elongata Himel1 dioecious)
CAGATCGTCAAGCTTCGCCGTCTAAAGAAGCTCCAAATGTCGTTCAACAA
CTTGCGCTCGCTGCCAATGGGGATGGAGGGGATGCGCAGCCTCGAGCTTT
TCAGCAGATCGTCAAGCTTCGCCGTCTAAAGAAGCTCCAAATGTCGTTCA
ACAACTTGCGCTCGCTGCCAATGGGGATGGAGGGGATGCGCAGCCTCGAG
CTTTTCAGAAGGTTGGCGGTTAACCCAGACTTGGCGATGGTGCCTGAAAG
TTTTGCCTTCGCCGAGCGCCTGTCATGGGTATCCCTAGGAGGCACTGCCT
GGTGCGCTCGAGCCGCGGAAAGGCGTCGCAGAAGGTTGGCGGTTAACCCA
GACTTGGCGATGGTGCCTGAAAGTTTTGCCTTCGCCGAGCGCCTGTCATG
GGTATCCCTAGGAGGCACTGCCTGGTGCGCTCGAGCCGCGGAAAGGCGTC
GCAGGTTCCCTTTCTCAGTCATTCCCCGGGAAGAGGTGGTGCTCGGGGAG
AAGCTTGGGAGCGGAGCGTCGGGAGACGTGTACGCCGCTATCTACAATGG
GCAGAACGTGGCCGTGAAGGTTCCCTTTCTCAGTCATTCCCCGGGAAGAG
GTGGTGCTCGGGGAGAAGCTTGGGAGCGGAGCGTCGGGAGACGTGTACGC
CGCTATCTACAATGGGCAGAACGTGGCCGTGAAGGTGTTCAAGTCCGACG
TAAGCCCTGACGGCAACGCCCGCGACGAGCTGGACGTGGCCTGCGCCGTT
GACCACCCGAACTTGACCAAGGCTATCGGCATCGTTCGTGCCAACCGCAG
CGACGGCGGTGATGGTGACCATGGGGTGACGAATAGCGACTGCCGCATCA
ACAGAAAGCAGTGGCTGGTGATGGAGAAGGTGGAGGGACAGCCGCTGGCG
GAGAAGCCCGACTTGACGAGCGTGCTGCGGTGTCGGTGGGAAGCGGGGAG
GAGGTTCGAGTCCGTTTTGGTCCTGGCGGTATTGCTGCAGGTGTTCAAGT
CCGACGTAAGCCCTGACGGCAACGCCCGCGACGAGCTGGACGTGGCCTGC
GCCGTTGACCACCCGAACTTGACCAAGGCTATCGGCATCGTTCGTGCCAA
CCGCAGCGACGGCGGTGATGGTGACCATGGGGTGACGAATAGCGACTGCC
GCATCAACAGAAAGCAGTGGCTGGTGATGGAGAAGGTGGAGGGACAGCCG
CTGGCGGAGAAGCCCGACTTGACGAGCGTGCTGCGGTGTCGGTGGGAAGC
GGGGAGGAGGTTCGAGTCCGTTTTGGTCCTGGCGGTATTGCTGCAGGTGG
CGAGGGCGATGTCCTATCTTCACGAGAAGAACATCTGCCACGGGGACCTT
TACGCTCATAATGTGCTGGTGGACGGTGAGACGGGTGCGAGCGTCCTGTG
CGACTTCGGCGCCAGCTTTTTTTATCAGAACCTTTCGGAGAGACACGACC
CCAACGGCTTCGCGCTAGAGGGGGCAGAGGTCCGGGCCTTTGGGATTATG
GCGAGGGACATGGCATGTCGCAGCGTGGGCTGCGAGTGGATTTTGCAGGT
GGCGAGGGCGATGTCCTATCTTCACGAGAAGAACATCTGCCACGGGGACC
TTTACGCTCATAATGTGCTGGTGGACGGTGAGACGGGTGCGAGCGTCCTG
TGCGACTTCGGCGCCAGCTTTTTTTATCAGAACCTTTCGGAGAGACACGA
CCCCAACGGCTTCGCGCTAGAGGGGGCAGAGGTCCGGGCCTTTGGGATTA
TGGCGAGGGACATGGCATGTCGCAGCGTGGGCTGCGAGTGGATTTTGCAG
GACCTGGCGCCGTCCTGTATTCAAGCGGATACGTTTCTTCGCCCTTCATT
TCACGAGGACCTGGCGCCGTCCTGTATTCAAGCGGATACGTTTCTTCGCC
CTTCATTTCACGAG
back to top