mRNA_H-elongata_contig17090.4379.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17090.4379.1
Unique NamemRNA_H-elongata_contig17090.4379.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17090.4379.1 vs. uniprot
Match: A0A6H5JC22_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC22_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.350e-23
Identity = 48/78 (61.54%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    1 HFCTLAARGSPYVTFEFTGTTPTIRSDGDIIEIDGKKAKVSTSVHGTIFKLTMNQWKTWMVFTSESVTLKMTSKREME 234
            +F TL ARGSPY+TFEF G TP I+++GDI+EI+GKKA+V  S+  T FKL ++ W+TW+VFTSESVT K+TS +E+E
Sbjct:  230 NFRTLLARGSPYMTFEFAGATPRIKANGDILEINGKKAEVGASLFATTFKLALSNWETWVVFTSESVTWKVTSLQEVE 307
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BLAST of mRNA_H-elongata_contig17090.4379.1 vs. uniprot
Match: D8LU99_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU99_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.500e-22
Identity = 47/78 (60.26%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    1 HFCTLAARGSPYVTFEFTGTTPTIRSDGDIIEIDGKKAKVSTSVHGTIFKLTMNQWKTWMVFTSESVTLKMTSKREME 234
            +F TL ARGSPY+TFEF G TP I+++GDI+EI+GKKA+   S+  T FKL ++ W+TW+VFTSESVT K+TS +E+E
Sbjct:  230 NFRTLLARGSPYMTFEFAGATPRIKANGDILEINGKKAEAGASLFATTFKLALSNWETWVVFTSESVTWKVTSLQEVE 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17090.4379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC22_9PHAE4.350e-2361.54Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. ... [more]
D8LU99_ECTSI1.500e-2260.26Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17090contigH-elongata_contig17090:6347..6966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue3.6e-19
Seed eggNOG ortholog2880.D8LU99
KEGG koko:K01180
EggNOG free text desc.chitin catabolic process
EggNOG OGsCOG5498@1,KOG2254@2759
Ec32 ortholog descriptionEndo-1,3-beta-glucanase, family GH81
Ec32 orthologEc-14_004220.1
EC3.2.1.6
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size236
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.2811887-CDS-H-elongata_contig17090:6346..64421622929995.2811887-CDS-H-elongata_contig17090:6346..6442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17090 6347..6442 +
1691679239.0689106-CDS-H-elongata_contig17090:6346..64421691679239.0689106-CDS-H-elongata_contig17090:6346..6442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17090 6347..6442 +
1622929995.2926548-CDS-H-elongata_contig17090:6828..69661622929995.2926548-CDS-H-elongata_contig17090:6828..6966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17090 6829..6966 +
1691679239.0780694-CDS-H-elongata_contig17090:6828..69661691679239.0780694-CDS-H-elongata_contig17090:6828..6966Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17090 6829..6966 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17090.4379.1prot_H-elongata_contig17090.4379.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17090 6347..6966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17090.4379.1

>prot_H-elongata_contig17090.4379.1 ID=prot_H-elongata_contig17090.4379.1|Name=mRNA_H-elongata_contig17090.4379.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
HFCTLAARGSPYVTFEFTGTTPTIRSDGDIIEIDGKKAKVSTSVHGTIFK
LTMNQWKTWMVFTSESVTLKMTSKREME
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mRNA from alignment at H-elongata_contig17090:6347..6966+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17090.4379.1 ID=mRNA_H-elongata_contig17090.4379.1|Name=mRNA_H-elongata_contig17090.4379.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=620bp|location=Sequence derived from alignment at H-elongata_contig17090:6347..6966+ (Himanthalia elongata Himel1 dioecious)
CACTTCTGCACGCTTGCAGCCCGCGGATCCCCGTACGTAACCTTCGAGTT
TACCGGAACAACCCCTACCATCAGGAGCGACGGGGACATCATCGAGGTAG
CTGAGAGGGATGGGGGTTGGGGGCATCAATAGAAGGGATGTCTAACGTGA
TAAAAATCGAAACAATCAGTCCCGTTGCATCATAAAAAAATCATGGTGAG
TTTCCAGATCTAATGTAAATATGTTTTGCGAACCCTAAAAGATGTACGGA
GTATGATTTCCGGAGGATCTTTCCACCCCGACGTATCGCGGTCGGGGTTC
CGGATCTGTGTTAATAATTGGCGCACCCTGGGAGATAGACACGACGTGCT
CTTCGGACGAAACCCAACTTGCTGTCGAGATGTCCTTTCTGCCTTCCGCA
CAAAATAGCAACCACCCTTTTATTGCACTGCAGGGCCTGATACGAATAGT
CGTTTATGGCGCCACTCGTTATGGTACGGCAGATCGACGGTAAAAAGGCT
AAGGTCAGTACTTCTGTGCATGGAACGATTTTCAAGCTGACCATGAACCA
ATGGAAAACGTGGATGGTCTTCACCTCCGAGTCCGTCACGCTCAAGATGA
CCTCGAAGCGCGAAATGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig17090:6347..6966+

>mRNA_H-elongata_contig17090.4379.1 ID=mRNA_H-elongata_contig17090.4379.1|Name=mRNA_H-elongata_contig17090.4379.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig17090:6347..6966+ (Himanthalia elongata Himel1 dioecious)
CACTTCTGCACGCTTGCAGCCCGCGGATCCCCGTACGTAACCTTCGAGTT
TACCGGAACAACCCCTACCATCAGGAGCGACGGGGACATCATCGAGCACT
TCTGCACGCTTGCAGCCCGCGGATCCCCGTACGTAACCTTCGAGTTTACC
GGAACAACCCCTACCATCAGGAGCGACGGGGACATCATCGAGATCGACGG
TAAAAAGGCTAAGGTCAGTACTTCTGTGCATGGAACGATTTTCAAGCTGA
CCATGAACCAATGGAAAACGTGGATGGTCTTCACCTCCGAGTCCGTCACG
CTCAAGATGACCTCGAAGCGCGAAATGGAGATCGACGGTAAAAAGGCTAA
GGTCAGTACTTCTGTGCATGGAACGATTTTCAAGCTGACCATGAACCAAT
GGAAAACGTGGATGGTCTTCACCTCCGAGTCCGTCACGCTCAAGATGACC
TCGAAGCGCGAAATGGAG
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