mRNA_H-elongata_contig170893.4378.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170893.4378.1
Unique NamemRNA_H-elongata_contig170893.4378.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig170893.4378.1 vs. uniprot
Match: A0A6H5L7C6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7C6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.140e-10
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    7 DSLNFSLSQLRVKVEQAFGIL-------WRPLRVRFPQRFKLTRAFLHLHNVCIDGK 156
            DS NF LSQLRVK+EQ+FGIL       WRPLRV+F  R  L  A  HLHN   D K
Sbjct:   69 DSFNFHLSQLRVKIEQSFGILVSTRGIPWRPLRVQFAGRADLITALFHLHNFLQDEK 125
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BLAST of mRNA_H-elongata_contig170893.4378.1 vs. uniprot
Match: A0A6H5JY98_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY98_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.120e-10
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    7 DSLNFSLSQLRVKVEQAFGIL-------WRPLRVRFPQRFKLTRAFLHLHNVCIDGK 156
            DS NF LSQLRVK+EQ+FGIL       WRPLRV++  R  L  AF HLHN   D K
Sbjct:  163 DSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQYGGRADLITAFCHLHNFLQDEK 219
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BLAST of mRNA_H-elongata_contig170893.4378.1 vs. uniprot
Match: A0A6H5JPH5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.870e-10
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    7 DSLNFSLSQLRVKVEQAFGIL-------WRPLRVRFPQRFKLTRAFLHLHNVCIDGK 156
            DS NF LSQLRVK+EQ+FGIL       WRPLRV+F  R  L  A  HLHN   D K
Sbjct:  176 DSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQFAGRADLITALFHLHNFLQDEK 232
[Close]
BLAST of mRNA_H-elongata_contig170893.4378.1 vs. uniprot
Match: A0A6H5KQF5_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.900e-10
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    7 DSLNFSLSQLRVKVEQAFGIL-------WRPLRVRFPQRFKLTRAFLHLHNVCIDGK 156
            DS NF LSQLRVK+EQ+FGIL       WRPLRV+F  R  L  A  HLHN   D K
Sbjct:  165 DSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQFAGRADLITALFHLHNFLQDEK 221
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BLAST of mRNA_H-elongata_contig170893.4378.1 vs. uniprot
Match: A0A6H5JD50_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD50_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.940e-10
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    7 DSLNFSLSQLRVKVEQAFGIL-------WRPLRVRFPQRFKLTRAFLHLHNVCIDGK 156
            DS NF LSQLRVK+EQ+FGIL       WRPLRV+F  R  L  A  HLHN   D K
Sbjct:  319 DSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQFAGRADLITALFHLHNFLQDEK 375
[Close]
BLAST of mRNA_H-elongata_contig170893.4378.1 vs. uniprot
Match: A0A6H5L7S5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S5_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.220e-9
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    7 DSLNFSLSQLRVKVEQAFGILWRPLRVRFPQRFKLTRAFLHLHN 138
            DS NF LSQL VK+EQ+FGILWRPLRV+   R  L  A  HLHN
Sbjct:  217 DSFNFHLSQLCVKIEQSFGILWRPLRVQLAGRADLITALSHLHN 260
[Close]
BLAST of mRNA_H-elongata_contig170893.4378.1 vs. uniprot
Match: A0A6H5KNZ9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ9_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.530e-9
Identity = 32/57 (56.14%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    7 DSLNFSLSQLRVKVEQAFGIL-------WRPLRVRFPQRFKLTRAFLHLHNVCIDGK 156
            DS NF LSQLRVK+EQ+FGIL       WRPLRV+   R  L  A  HLHN   D K
Sbjct:  322 DSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQLGGRADLITALFHLHNFLQDEK 378
[Close]
BLAST of mRNA_H-elongata_contig170893.4378.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.820e-9
Identity = 32/57 (56.14%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    7 DSLNFSLSQLRVKVEQAFGIL-------WRPLRVRFPQRFKLTRAFLHLHNVCIDGK 156
            D+ NF LSQLRVK+EQAFGIL       WRPLRV+F  R  L  A   LHN   D K
Sbjct:  310 DAFNFYLSQLRVKIEQAFGILVGQWGILWRPLRVQFAGRSGLITALFRLHNFLCDEK 366
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BLAST of mRNA_H-elongata_contig170893.4378.1 vs. uniprot
Match: A0A6H5JWD7_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.500e-8
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    7 DSLNFSLSQLRVKVEQAFGIL-------WRPLRVRFPQRFKLTRAFLHLHNVCID 150
            DS NF LSQLRVK+EQA+GIL       WRPLRV+F  R  L  A   LHN   D
Sbjct:  177 DSFNFHLSQLRVKIEQAYGILVGQWGILWRPLRVQFAGRSALITALFRLHNYLRD 231
[Close]
BLAST of mRNA_H-elongata_contig170893.4378.1 vs. uniprot
Match: A0A6H5K9T7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.510e-8
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    7 DSLNFSLSQLRVKVEQAFGIL-------WRPLRVRFPQRFKLTRAFLHLHNVCIDGK 156
            DS NF LSQLRVK+EQ+FGIL       WRPLRV+F  R  L  A  +LH+   D K
Sbjct:  199 DSFNFHLSQLRVKIEQSFGILVSTWGIQWRPLRVQFGGRADLITALFYLHHFLQDEK 255
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170893.4378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5L7C6_9PHAE1.140e-1057.89DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JY98_9PHAE2.120e-1057.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH5_9PHAE2.870e-1057.89DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KQF5_9PHAE2.900e-1057.89DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JD50_9PHAE3.940e-1057.89DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5L7S5_9PHAE1.220e-965.91DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KNZ9_9PHAE3.530e-956.14DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JDE6_9PHAE4.820e-956.14DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JWD7_9PHAE1.500e-856.36DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5K9T7_9PHAE1.510e-854.39DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170893contigH-elongata_contig170893:1..183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.2174559-CDS-H-elongata_contig170893:0..611622929995.2174559-CDS-H-elongata_contig170893:0..61Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170893 1..61 +
1691679239.0463064-CDS-H-elongata_contig170893:0..611691679239.0463064-CDS-H-elongata_contig170893:0..61Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170893 1..61 +
1622929995.2378905-CDS-H-elongata_contig170893:82..1831622929995.2378905-CDS-H-elongata_contig170893:82..183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170893 83..183 +
1691679239.0555096-CDS-H-elongata_contig170893:82..1831691679239.0555096-CDS-H-elongata_contig170893:82..183Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170893 83..183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170893.4378.1prot_H-elongata_contig170893.4378.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170893 1..183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170893.4378.1

>prot_H-elongata_contig170893.4378.1 ID=prot_H-elongata_contig170893.4378.1|Name=mRNA_H-elongata_contig170893.4378.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
EFDSLNFSLSQLRVKVEQAFGILWRPLRVRFPQRFKLTRAFLHLHNVCID
GKDP
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mRNA from alignment at H-elongata_contig170893:1..183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170893.4378.1 ID=mRNA_H-elongata_contig170893.4378.1|Name=mRNA_H-elongata_contig170893.4378.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig170893:1..183+ (Himanthalia elongata Himel1 dioecious)
GAGTTCGACTCTCTGAATTTCAGCCTCAGCCAGCTACGCGTGAAGGTCGA
ACAAGCTTTTGGTATACTTGTGGCGTGGTGAGGCATTTTATGGCGACCGC
TGCGCGTTCGATTCCCCCAGCGGTTCAAGCTTACCCGCGCCTTTTTACAT
CTCCATAACGTCTGCATCGACGGCAAAGATCCG
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Coding sequence (CDS) from alignment at H-elongata_contig170893:1..183+

>mRNA_H-elongata_contig170893.4378.1 ID=mRNA_H-elongata_contig170893.4378.1|Name=mRNA_H-elongata_contig170893.4378.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig170893:1..183+ (Himanthalia elongata Himel1 dioecious)
GAGTTCGACTCTCTGAATTTCAGCCTCAGCCAGCTACGCGTGAAGGTCGA
ACAAGCTTTTGGAGTTCGACTCTCTGAATTTCAGCCTCAGCCAGCTACGC
GTGAAGGTCGAACAAGCTTTTGGCATTTTATGGCGACCGCTGCGCGTTCG
ATTCCCCCAGCGGTTCAAGCTTACCCGCGCCTTTTTACATCTCCATAACG
TCTGCATCGACGGCAAAGATCCGGCATTTTATGGCGACCGCTGCGCGTTC
GATTCCCCCAGCGGTTCAAGCTTACCCGCGCCTTTTTACATCTCCATAAC
GTCTGCATCGACGGCAAAGATCCG
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