mRNA_H-elongata_contig170878.4377.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170878.4377.1
Unique NamemRNA_H-elongata_contig170878.4377.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig170878.4377.1 vs. uniprot
Match: D7G0J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J5_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.390e-27
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 KVLQEERVLRKVDIGEYPLDLVPLEKDVLSLELDALFRRVHLDGDTSGLSVVARSIQKLQAV 186
            +VLQEERVLR+VD+G+YPLDLVPLEKDVLSLELD LFRRVHLDGDTSGLSVVARS+QKLQ V
Sbjct:  137 QVLQEERVLRRVDVGDYPLDLVPLEKDVLSLELDGLFRRVHLDGDTSGLSVVARSVQKLQTV 198
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BLAST of mRNA_H-elongata_contig170878.4377.1 vs. uniprot
Match: A0A6H5L2P5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.890e-27
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 KVLQEERVLRKVDIGEYPLDLVPLEKDVLSLELDALFRRVHLDGDTSGLSVVARSIQKLQAV 186
            +VLQEERVLR+VD+G+YPLDLVPLEKDVLSLELD LFRRVHLDGDTSGLSVVARS+QKLQ V
Sbjct:  137 QVLQEERVLRRVDVGDYPLDLVPLEKDVLSLELDGLFRRVHLDGDTSGLSVVARSVQKLQTV 198
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BLAST of mRNA_H-elongata_contig170878.4377.1 vs. uniprot
Match: A0A7S1SZR4_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SZR4_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 5.320e-15
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 KVLQEERVLRKVDIGEYPLDLVPLEKDVLSLELDALFRRVHLDGDTSGLSVVARSIQKLQAV 186
            ++L+EE VL  V IGE+PLD+VP E D+LSLE+D +FR   LDGD SGL  VAR+I KLQA+
Sbjct:  138 RILEEEGVLGDVSIGEFPLDIVPFEADLLSLEMDNVFRECALDGDPSGLFYVARAITKLQAL 199
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BLAST of mRNA_H-elongata_contig170878.4377.1 vs. uniprot
Match: A0A507E3I2_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E3I2_9FUNG)

HSP 1 Score: 71.2 bits (173), Expect = 5.810e-13
Identity = 33/62 (53.23%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 KVLQEERVLRKVDIGEYPLDLVPLEKDVLSLELDALFRRVHLDGDTSGLSVVARSIQKLQAV 186
            +VL+EE V  ++ IGE+ LDL+PLE D+LSLELD  FR ++LDGDT+G+  +A+++ KLQ +
Sbjct:  143 RVLEEEGVYGELTIGEFHLDLIPLEDDLLSLELDNSFRELYLDGDTTGIFSLAKAVMKLQTM 204
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BLAST of mRNA_H-elongata_contig170878.4377.1 vs. uniprot
Match: A0A7S4KP01_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KP01_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 1.080e-12
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 KVLQEERVLRKVDIGEYPLDLVPLEKDVLSLELDALFRRVHLDGDTSGLSVVARSIQKLQAV 186
            +VL+EE V   V I E+PLDL+P EKDV SLELD  +R+  L+GDT+ L  VAR I KLQ+V
Sbjct:  126 RVLEEEDVYTCVQIEEFPLDLIPFEKDVFSLELDDSYRQCTLEGDTTSLFYVARGIMKLQSV 187
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BLAST of mRNA_H-elongata_contig170878.4377.1 vs. uniprot
Match: A0A0L0H554_SPIPD (Uncharacterized protein n=3 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H554_SPIPD)

HSP 1 Score: 69.3 bits (168), Expect = 2.760e-12
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 KVLQEERVLRKVDIGEYPLDLVPLEKDVLSLELDALFRRVHLDGDTSGLSVVARSIQKLQAV 186
            +VL+EE V   V +GEY LDL+PLE D+LSLELD+ FR ++L+GDT+ +  +A+++ KLQ +
Sbjct:  119 RVLEEEGVFGDVIVGEYHLDLLPLEDDLLSLELDSAFRELYLEGDTTAIFCMAKALMKLQTM 180
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BLAST of mRNA_H-elongata_contig170878.4377.1 vs. uniprot
Match: A0A314KH47_NICAT (Vacuolar protein-sorting-associated protein 33-like protein (Fragment) n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=A0A314KH47_NICAT)

HSP 1 Score: 64.7 bits (156), Expect = 3.230e-12
Identity = 29/60 (48.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 KVLQEERVLRKVDIGEYPLDLVPLEKDVLSLELDALFRRVHLDGDTSGLSVVARSIQKLQ 180
            K+L+EE+V   + IGEYPL+L+PL++DVLS ELD   +   +DGDT+ L  +A+++ KL+
Sbjct:   30 KILEEEKVHHLLTIGEYPLNLIPLDEDVLSFELDVAHKEYLVDGDTTSLWHIAKALHKLE 89
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BLAST of mRNA_H-elongata_contig170878.4377.1 vs. uniprot
Match: A0A2G5BEU7_COERN (Sec1-like protein (Fragment) n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BEU7_COERN)

HSP 1 Score: 68.9 bits (167), Expect = 3.770e-12
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 KVLQEERVLRKVDIGEYPLDLVPLEKDVLSLELDALFRRVHLDGDTSGLSVVARSIQKLQAV 186
            +VL+EE VL  + +GEY +D VPLE DV+SLE   LF++++LDGD SG+  VAR++ +LQ +
Sbjct:   92 RVLEEEGVLGDIVLGEYSMDAVPLEDDVVSLEQPGLFKQLYLDGDFSGIQYVARALMRLQGL 153
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BLAST of mRNA_H-elongata_contig170878.4377.1 vs. uniprot
Match: A0A1Y1XUL5_9FUNG (Vacuolar protein sorting-associated protein 33A n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XUL5_9FUNG)

HSP 1 Score: 68.2 bits (165), Expect = 7.050e-12
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 KVLQEERVLRKVDIGEYPLDLVPLEKDVLSLELDALFRRVHLDGDTSGLSVVARSIQKLQAV 186
            ++L+EE V   + IGEY LDL+P E D+LSLELD  F+ ++LDGD + +  VAR+I +LQ+V
Sbjct:  121 RLLEEEGVYGDITIGEYHLDLIPFEDDLLSLELDNSFKELYLDGDNTSIYYVARAIMRLQSV 182
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BLAST of mRNA_H-elongata_contig170878.4377.1 vs. uniprot
Match: A0A453PVG5_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453PVG5_AEGTS)

HSP 1 Score: 67.0 bits (162), Expect = 7.740e-12
Identity = 33/60 (55.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 KVLQEERVLRKVDIGEYPLDLVPLEKDVLSLELDALFRRVHLDGDTSGLSVVARSIQKLQ 180
            K+L+EE+V +K+ IGEYPL LVPL++DVLSLELD   +   ++GDTS +  VA++I KL+
Sbjct:  123 KILEEEKVHQKLTIGEYPLYLVPLDEDVLSLELDYSLQECLIEGDTSSVWHVAKAIHKLE 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170878.4377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0J5_ECTSI1.390e-2788.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2P5_9PHAE1.890e-2788.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1SZR4_9CHLO5.320e-1561.29Hypothetical protein (Fragment) n=2 Tax=Tetraselmi... [more]
A0A507E3I2_9FUNG5.810e-1353.23Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A7S4KP01_9EUKA1.080e-1258.06Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A0L0H554_SPIPD2.760e-1251.61Uncharacterized protein n=3 Tax=Spizellomyces TaxI... [more]
A0A314KH47_NICAT3.230e-1248.33Vacuolar protein-sorting-associated protein 33-lik... [more]
A0A2G5BEU7_COERN3.770e-1251.61Sec1-like protein (Fragment) n=1 Tax=Coemansia rev... [more]
A0A1Y1XUL5_9FUNG7.050e-1251.61Vacuolar protein sorting-associated protein 33A n=... [more]
A0A453PVG5_AEGTS7.740e-1255.00Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170878contigH-elongata_contig170878:108..1280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue7.3e-23
Seed eggNOG ortholog2880.D7G0J5
KEGG koko:K20182
KEGG Pathwayko04138,map04138
EggNOG free text desc.vesicle docking involved in exocytosis
EggNOG OGsCOG5158@1,KOG1302@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.155339-CDS-H-elongata_contig170878:107..1761622929995.155339-CDS-H-elongata_contig170878:107..176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170878 108..176 -
1691679239.0296862-CDS-H-elongata_contig170878:107..1761691679239.0296862-CDS-H-elongata_contig170878:107..176Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170878 108..176 -
1622929995.1726196-CDS-H-elongata_contig170878:1163..12801622929995.1726196-CDS-H-elongata_contig170878:1163..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170878 1164..1280 -
1691679239.038835-CDS-H-elongata_contig170878:1163..12801691679239.038835-CDS-H-elongata_contig170878:1163..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170878 1164..1280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170878.4377.1prot_H-elongata_contig170878.4377.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170878 108..1280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170878.4377.1

>prot_H-elongata_contig170878.4377.1 ID=prot_H-elongata_contig170878.4377.1|Name=mRNA_H-elongata_contig170878.4377.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
KVLQEERVLRKVDIGEYPLDLVPLEKDVLSLELDALFRRVHLDGDTSGLS
VVARSIQKLQAV
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mRNA from alignment at H-elongata_contig170878:108..1280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170878.4377.1 ID=mRNA_H-elongata_contig170878.4377.1|Name=mRNA_H-elongata_contig170878.4377.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1173bp|location=Sequence derived from alignment at H-elongata_contig170878:108..1280- (Himanthalia elongata Himel1 dioecious)
AAGGTTCTTCAAGAAGAACGCGTGCTTCGAAAGGTGGACATCGGAGAGTA
CCCCCTCGACCTTGTTCCGCTGGAGAAGGATGTCCTCAGCCTAGAGCTCG
ACGCACTGTTCCGAAGAGTAAGTATATATCATGGTATGTGTGTGTGTGTA
ATTTATGTGATTGAGTGTTATTATTTAGTAGTATTAAATTATGTGTGTGT
ATTTATTAAATTGCATATAACAGCGCAATCCGGCTCTGTCATACTAGCTC
TTCTAGACTGCTCTCGTATTGATCCTCCCAATGGGGGATTCAATCATATT
TGCTATAAAAACCTCTGATCAGGCGTGACAAAAGGAGACAAGTATTCGTG
TGCTTTAACTCGTTAGCGAATGTAAACTATTACTTGAAGAGATAACCAGA
GAGCAACCTCGGCACACGGTGGCTCGTCATTTTGGGAGCGGGAGAGTGAG
TCATTTTTATGTTACCTTTTTTTATTTATTTTTTATTTCCTGCATGCTTT
CTTGAAGTTTTTCCTGTTTTTGTTTTCAAGCTTTAAAAAAAATCTTTACG
CTTTTCTTTATTTTTTTGCCTTTTCTTGCTTGTTCTGTTCACTTTCAGTC
TCTTCCTCACGTAAAGACGTCCGTTTTTTCTGTTTTTATTTTATTTTTTC
TCCTCTGTTTAGATCTTTCATTCTTCTTAAAAATATATATATATGAATGA
ACTCATTGAAACCCTCCGAACATCCACGCACCCTCGCTCTTCCTCTTGGG
CTTCAAATGCCGTACTATGTAACATGTGATATGTAATTGGTAATTGGTAA
TTTGTAATATTGATAGGAACATAAAGCATACCTTAATATTTTACTTAAAT
TTGTATTTTTATTATTATCGATTTCATGTTTTTACGTACAACTATAATAT
ACTGTACGAAATTACAATGCGGCGCAATCACCTTCGTCTCGACGGCGAAA
TGTAACTGTCGTGATGAACTCTCGGTAATGGCATGATATATATATATATA
TATATAAATGTGGATGTTGTATCTTACAATCACGCTTGTCATATTGATAT
AAAATAAGATTGATAAAACACGATGCGGCGCGCATCTGAAACTCGTGCGT
ACAGGTTCATCTGGACGGTGACACCTCGGGGCTATCGGTAGTGGCAAGAT
CGATTCAGAAGCTTCAGGCGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig170878:108..1280-

>mRNA_H-elongata_contig170878.4377.1 ID=mRNA_H-elongata_contig170878.4377.1|Name=mRNA_H-elongata_contig170878.4377.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig170878:108..1280- (Himanthalia elongata Himel1 dioecious)
AAGGTTCTTCAAGAAGAACGCGTGCTTCGAAAGGTGGACATCGGAGAGTA
CCCCCTCGACCTTGTTCCGCTGGAGAAGGATGTCCTCAGCCTAGAGCTCG
ACGCACTGTTCCGAAGAAAGGTTCTTCAAGAAGAACGCGTGCTTCGAAAG
GTGGACATCGGAGAGTACCCCCTCGACCTTGTTCCGCTGGAGAAGGATGT
CCTCAGCCTAGAGCTCGACGCACTGTTCCGAAGAGTTCATCTGGACGGTG
ACACCTCGGGGCTATCGGTAGTGGCAAGATCGATTCAGAAGCTTCAGGCG
GTAGTTCATCTGGACGGTGACACCTCGGGGCTATCGGTAGTGGCAAGATC
GATTCAGAAGCTTCAGGCGGTA
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