prot_H-elongata_contig170877.4376.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig170877.4376.1
Unique Nameprot_H-elongata_contig170877.4376.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length128
Homology
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: D8LLF2_ECTSI (Kinetochore protein NDC80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLF2_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 4.450e-25
Identity = 66/151 (43.71%), Postives = 86/151 (56.95%), Query Frame = 0
Query:    1 PSGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVFVL-----------------------NLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQQV 128
            PSGRFEDDV+PFLKM+RYPF +S+SSLAAVGAPQTWPKV    S+   +        +                        +  Q AD K+F+ YL + Y  FLEGDD+A  A++ +Y  AR+ E A AEE  ++ EEA E L Q  Q++
Sbjct:  186 PSGRFEDDVVPFLKMVRYPFTISKSSLAAVGAPQTWPKVMGAISWIVDALLYDETIAVAEEEQRAREREATPEEXXRDKEDGVDDQGADQKNFVAYLEEAYCCFLEGDDEAHQAVTTEYTEARDEEDAGAEEFLRNLEEANEALGQTNQEL 336          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A836CEN5_9STRA (Kinetochore protein NDC80 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 6.720e-14
Identity = 46/106 (43.40%), Postives = 59/106 (55.66%), Query Frame = 0
Query:    1 PSGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFF-VSFAKKGVFVLNLFSQ------VADLKD--FIDYLGDGYSYFLEGDDDAFSALSEDYV 97
            P  RFED+VIPFLK + YPF LS+S L AVGAPQ+WPK     S+   +    K V       Q        D+ D  F +YLG  Y+ FL GD+ + +AL +D V
Sbjct:  123 PGARFEDEVIPFLKSIHYPFTLSKSLLQAVGAPQSWPKALAAISWIVELLMYDKEVAAYESEQQDRRLAGEVDIADHAFFEYLGQAYACFLNGDETSLTALEQDLV 228          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A5D6YBF4_9STRA (Kinetochore protein NDC80 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBF4_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 8.340e-11
Identity = 41/109 (37.61%), Postives = 62/109 (56.88%), Query Frame = 0
Query:    4 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVS-----VLASFFFVSFAKKGVFVLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKA 107
            +FE+DV   LK LRYPFA+S+++L AVG+P TWP +      V+    +    ++   V     +  D K F +YLG  Y  FL GDDD ++ L +   N + A++AK+
Sbjct:  144 KFEEDVAAQLKNLRYPFAISKTALVAVGSPHTWPALLGCIAWVIELLSYDEIVQRDTNVDEFDGESGD-KAFFEYLGSAYRVFLAGDDDQYNRLEQQEAN-KHAKNAKS 250          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: K3WJZ8_GLOUD (Kinetochore protein NDC80 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJZ8_GLOUD)

HSP 1 Score: 67.8 bits (164), Expect = 1.150e-10
Identity = 43/129 (33.33%), Postives = 69/129 (53.49%), Query Frame = 0
Query:    4 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVS-----VLASFFFVSFAKKGVFVLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQQ 127
            +FE+DV   LK LRYPFA+S+++L AVG+P TWP +      V+    +    ++   V     +  D K F +YLG  Y  FL GDDD ++ L +      ++++    +   + E A E L ++I+Q
Sbjct:  166 KFEEDVATQLKTLRYPFAISKTALVAVGSPHTWPALLGSIAWVIELLSYDEIVQRDTNVEEFDGENGD-KAFFEYLGTAYRVFLAGDDDQYNELEQREATKIDSQNQVIRDECSELERANEELKRRIEQ 293          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A7S3UM16_HETAK (Kinetochore protein NDC80 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UM16_HETAK)

HSP 1 Score: 65.9 bits (159), Expect = 1.500e-10
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 0
Query:    2 SGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASF-FFVSFAKKGVFVLNLFS-----------QVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYV 97
            +G FE+ VI   K LRYPFA+S+++L+AVG+P TWP  ++L S  + V   +    V    +           Q +D + F+DYLG  Y+ FL GDDD ++AL  + V
Sbjct:   57 AGSFENAVIATFKTLRYPFAISKTALSAVGSPHTWP--TLLGSLTWLVELLEYDAEVEQARAEADHHLGFDGDQASDDRAFMDYLGRAYTAFLMGDDDLYAALEGELV 162          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A8K1CH35_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH35_PYTOL)

HSP 1 Score: 67.0 bits (162), Expect = 2.140e-10
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 0
Query:    4 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVF---VLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQ 126
            +FE+DV    K LRYPFA+S+++L AVG+P TWP +    ++     +   V    V++ F      K F +YLG+ Y  FL GDD+ ++ + +   N  +A++    E   D + A   L ++I+
Sbjct:  165 KFEEDVAAQFKNLRYPFAISKTALVAVGSPHTWPALLGSIAWIIELLSYDEVVQNAVVDGFDSENSEKRFFEYLGNAYRAFLSGDDEQYNLMEQQEANKYDAQNQILREECDDLQRANAELRKRIE 290          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A2D4CIV5_PYTIN (Kinetochore protein NDC80 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIV5_PYTIN)

HSP 1 Score: 63.5 bits (153), Expect = 3.480e-9
Identity = 40/127 (31.50%), Postives = 64/127 (50.39%), Query Frame = 0
Query:    4 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVFV---LNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQQ 127
            +FE+DV    K LRYPFA+S+++L AVG+P TWP +    ++     +   V        F      K F +YLG  Y  FL GDD+ +  + +      +A++    +   + E A E L ++IQ+
Sbjct:  167 KFEEDVAAQFKNLRYPFAISKTALVAVGSPHTWPALLGSIAWLIELLSYDEVVASGNAEAFDGENSEKRFFEYLGSAYRAFLAGDDEQYHQMEQQEAGKYDAQNQVIRDECAELERANEELRRRIQE 293          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: A0A2D4BGC7_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGC7_PYTIN)

HSP 1 Score: 63.5 bits (153), Expect = 3.740e-9
Identity = 40/127 (31.50%), Postives = 64/127 (50.39%), Query Frame = 0
Query:    4 RFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVFV---LNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAREAESAKAEEVGKDTEEAIERLTQQIQQ 127
            +FE+DV    K LRYPFA+S+++L AVG+P TWP +    ++     +   V        F      K F +YLG  Y  FL GDD+ +  + +      +A++    +   + E A E L ++IQ+
Sbjct:  775 KFEEDVAAQFKNLRYPFAISKTALVAVGSPHTWPALLGSIAWLIELLSYDEVVASGNAEAFDGENSEKRFFEYLGSAYRAFLAGDDEQYHQMEQQEAGKYDAQNQVIRDECAELERANEELRRRIQE 901          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: D0N350_PHYIT (Kinetochore protein NDC80 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N350_PHYIT)

HSP 1 Score: 62.4 bits (150), Expect = 4.420e-9
Identity = 37/99 (37.37%), Postives = 51/99 (51.52%), Query Frame = 0
Query:    2 SGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSFAKKGVFVLNLFSQVADL--------KDFIDYLGDGYSYFLEGDDDAFSAL 92
             G+FE+DV+  L+ LRYP ++S++SLAAVG P TWP + ++A  + +        +        D         K F  YL   Y  FL GDDD F AL
Sbjct:  137 KGKFEEDVVQQLRDLRYPISISKTSLAAVGTPHTWPML-LMAMSWLIELLSYDEAIQQASENEQDGENDEENGDKPFFKYLDASYHVFLAGDDDKFEAL 234          
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Match: W7TL40_9STRA (Kinetochore protein NDC80 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL40_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.820e-9
Identity = 40/120 (33.33%), Postives = 64/120 (53.33%), Query Frame = 0
Query:    2 SGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFV--------------------SFAKKGVFVLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNARE 101
            +G+ ED+V+ F K +RYPFA+S++S+ AVG   TWP  ++LAS  ++                    + +  G   ++ F + AD K   +YLG  Y  FL+GDDD ++ L +  V + E
Sbjct:  182 TGKLEDEVLAFFKAMRYPFAISKASMQAVGTMHTWP--TLLASITWMVELLTYDEEVQNDAANQAALAGSGSGCGSVDDFER-ADEKALFEYLGKAYKAFLDGDDDLYAQLEDSLVGSFE 298          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170877.4376.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLF2_ECTSI4.450e-2543.71Kinetochore protein NDC80 n=2 Tax=Ectocarpus TaxID... [more]
A0A836CEN5_9STRA6.720e-1443.40Kinetochore protein NDC80 n=1 Tax=Tribonema minus ... [more]
A0A5D6YBF4_9STRA8.340e-1137.61Kinetochore protein NDC80 n=1 Tax=Pythium brassicu... [more]
K3WJZ8_GLOUD1.150e-1033.33Kinetochore protein NDC80 n=1 Tax=Globisporangium ... [more]
A0A7S3UM16_HETAK1.500e-1038.89Kinetochore protein NDC80 (Fragment) n=1 Tax=Heter... [more]
A0A8K1CH35_PYTOL2.140e-1032.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CIV5_PYTIN3.480e-931.50Kinetochore protein NDC80 n=1 Tax=Pythium insidios... [more]
A0A2D4BGC7_PYTIN3.740e-931.50Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
D0N350_PHYIT4.420e-937.37Kinetochore protein NDC80 n=1 Tax=Phytophthora inf... [more]
W7TL40_9STRA4.820e-933.33Kinetochore protein NDC80 n=2 Tax=Monodopsidaceae ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 104..124
NoneNo IPR availablePANTHERPTHR46681:SF1KINETOCHORE PROTEINcoord: 3..126
NoneNo IPR availablePANTHERPTHR46681FAMILY NOT NAMEDcoord: 3..126
IPR005550Kinetochore protein Ndc80PFAMPF03801Ndc80_HECcoord: 4..40
e-value: 3.6E-11
score: 42.9
IPR038273Ndc80 domain superfamilyGENE3D1.10.418.30coord: 1..51
e-value: 2.1E-10
score: 42.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170877contigH-elongata_contig170877:271..1160 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170877.4376.1mRNA_H-elongata_contig170877.4376.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig170877 271..1160 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig170877.4376.1 ID=prot_H-elongata_contig170877.4376.1|Name=mRNA_H-elongata_contig170877.4376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
PSGRFEDDVIPFLKMLRYPFALSRSSLAAVGAPQTWPKVSVLASFFFVSF
AKKGVFVLNLFSQVADLKDFIDYLGDGYSYFLEGDDDAFSALSEDYVNAR
EAESAKAEEVGKDTEEAIERLTQQIQQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005550Kinetochore_Ndc80
IPR038273Ndc80_sf