mRNA_H-elongata_contig10528.437.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10528.437.1
Unique NamemRNA_H-elongata_contig10528.437.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: D7FW38_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW38_ECTSI)

HSP 1 Score: 207 bits (528), Expect = 3.380e-62
Identity = 105/143 (73.43%), Postives = 121/143 (84.62%), Query Frame = 1
Query:    1 VVLVTYLPLVGYTILLRDLLAPVLEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSHGVPEGVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
            VV VTYLPLVGYTILLRDLLAP+ EV L++ L + ARN++V+ LV+LI PAC L+TL ALRH SF SV+AV+LL VFIG+RA +C  S GVP   VN+WPEDGWSGALQAIPIY+CAF CHFNVLPVHGELA PTRERLHR+V
Sbjct:  103 VVCVTYLPLVGYTILLRDLLAPLAEVALNRTLGSPARNLLVSALVVLIYPACTLRTLTALRHLSFLSVLAVSLLTVFIGLRAGECAASVGVPASAVNLWPEDGWSGALQAIPIYICAFGCHFNVLPVHGELAKPTRERLHRLV 245          
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: A0A835ZAV6_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV6_9STRA)

HSP 1 Score: 144 bits (363), Expect = 5.100e-38
Identity = 75/147 (51.02%), Postives = 99/147 (67.35%), Query Frame = 1
Query:    1 VVLVTYLPLVGYTILLRDLLAPVLE--VILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFS--HGVPEGVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
            ++ VTYLPL+ Y IL+RDL+APV+E  V+    +   ARN++   LV  + P C+++ L  LR     S+ ++ +LAV I  RA  CV +   G   G VN+WP DG SGALQ++PI++CAFVCHFNVLPVHG LA PTR RLHR V
Sbjct:  106 IICVTYLPLIAYIILMRDLVAPVVELYVLGGATMSRGARNLLAAALVAAVFPVCLVERLHGLRAACLVSIASITMLAVAIITRAAQCVGAAPRGALRGAVNLWPRDGASGALQSVPIWICAFVCHFNVLPVHGALARPTRRRLHRTV 252          
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: A0A329S6M1_9STRA (Aa_trans domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329S6M1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.350e-23
Identity = 62/147 (42.18%), Postives = 93/147 (63.27%), Query Frame = 1
Query:    4 VLVTYLPLVGYTILLRDLLAPV-LEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSHG----VPEGVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
            VL+T+L LV Y IL +DL+  +    + ++ +  A +N++  V VLL+SPA + +++ ALR  S  S+V+V +LA+ I +RAVD  FSH      P+  + + P D W+ A  A PI   +F+CHFNVLPV+ EL  PTR RL ++V
Sbjct:  125 VLLTFLTLVAYVILTKDLVGSLGASFLYNRPISEAEQNVLTIVCVLLVSPALLARSMDALRFTSIFSLVSVLVLAIAITVRAVDATFSHHDIQEEPQIPIKLTP-DSWADAAYAFPIISVSFLCHFNVLPVYRELHKPTRHRLKKIV 270          
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: W2QAE6_PHYPN (Aa_trans domain-containing protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QAE6_PHYPN)

HSP 1 Score: 98.6 bits (244), Expect = 3.470e-21
Identity = 62/146 (42.47%), Postives = 90/146 (61.64%), Query Frame = 1
Query:    4 VLVTYLPLVGYTILLRDLLAPV-LEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSH-GVPE--GVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
            VL+T+L LV Y IL +DL+  +    + ++ L  A +NI+  V VLL+SPA + +++ ALR  S  S+V+V +LA+ I +RA D  FS   + E  G+      D W+ A  A PI   +F+CHFNVLPV+ EL  PTR RL ++V
Sbjct:  760 VLLTFLTLVAYVILTKDLVGSLGASFLYNRPLSNAEQNILTIVCVLLVSPALLARSMDALRFTSVFSLVSVLVLAIAITVRAADATFSRLDIQEESGISIKLTPDSWADAAYAFPIISVSFLCHFNVLPVYRELHKPTRHRLKKIV 905          
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: A0A6A3ZBD5_9STRA (Aa_trans domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZBD5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 9.010e-21
Identity = 59/150 (39.33%), Postives = 91/150 (60.67%), Query Frame = 1
Query:    4 VLVTYLPLVGYTILLRDLLAPV-LEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSH-------GVPEGVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
            VL+T+L LV Y IL +DL+  +    + ++ +  A +N++    VLL+SPA + +++ ALR  S  S+V+V +LA+ I +RAVD  F H         P+  + + P D W+ A  A PI   +F+CHFNV+PV+ EL  PTR RL ++V
Sbjct:  125 VLLTFLTLVAYVILTKDLVGSLGARFLYNRPVTEAEQNVLTICCVLLVSPALLARSMDALRFTSIFSLVSVLVLAIAITVRAVDTTFKHDDVMEVEAEPQIPIKLVP-DSWADAAYAFPIISVSFLCHFNVMPVYRELHKPTRHRLKKIV 273          
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: A0A484DTN2_BRELC (Aa_trans domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DTN2_BRELC)

HSP 1 Score: 96.3 bits (238), Expect = 1.610e-20
Identity = 59/144 (40.97%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    4 VLVTYLPLVGYTILLRDLLAPV-LEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSHGVPEGVVNV-WPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
            VL+T+L LV YTIL +DL++ +  + I ++ +  A +NI+    VLL+SPA + +++ ALR  S  S+++V +LA+ I IRA+    SH   +  +++    D  + A+ A PI   AF+CHFNVLPV+ EL  PTR RL ++V
Sbjct:  131 VLLTFLTLVAYTILTKDLVSSLGAKFIFNRPISNAEQNILTISCVLLVSPALLARSMSALRFTSMFSLMSVLMLAITISIRALGVTLSHRDIQKEIHIKLTPDSLADAVYAFPIISVAFLCHFNVLPVYRELHKPTRHRLKKIV 274          
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: A0A7S2H3F0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H3F0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.340e-19
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   31 GYTILLRDLLAPVLEVIL-----DQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSHGVPE------GVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
            GY +LLRDLL P+ + I+     D       RN+ + + VL+I+P   L+TL AL++    S+ ++ LL+VFI IR+V C FS  +          +N  P    +  L A+PI++ +FVCHFNVL VH EL NPT +R+ ++V
Sbjct:  137 GYAVLLRDLLEPLADHIIPPSKPDLEGPTFGRNLCMMIAVLIITPLTTLKTLTALKNVGAASMTSLLLLSVFIFIRSVQCNFSSSLARKSTSFGDYINYTPSS-LANFLDALPIFISSFVCHFNVLSVHNELQNPTSQRVSKLV 279          
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: H3HAN2_PHYRM (SAP domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HAN2_PHYRM)

HSP 1 Score: 94.0 bits (232), Expect = 1.400e-19
Identity = 57/150 (38.00%), Postives = 90/150 (60.00%), Query Frame = 1
Query:    4 VLVTYLPLVGYTILLRDLLAPV-LEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSH-------GVPEGVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
            VL+T+L LV Y IL +DL+  +    + ++ +  A +N++  + VLL+SPA + +++ ALR  S  S+V+V +LA+ I +RA   VF           P+  + + P D W+ A  A PI   +F+CHFNV+PV+ EL  PTR RL ++V
Sbjct:  534 VLLTFLTLVAYVILTKDLVGSLGARFLYNRPISEAEQNVLTVICVLLVSPALLARSMDALRFTSIFSLVSVLVLAIAITVRAAGTVFGRRDNLEVEAEPQIPIKMVP-DSWADAAYAFPIISVSFLCHFNVMPVYRELHKPTRHRLKKIV 682          
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: A0A421GWR1_9STRA (Aa_trans domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GWR1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.830e-19
Identity = 63/150 (42.00%), Postives = 88/150 (58.67%), Query Frame = 1
Query:    4 VLVTYLPLVGYTILLRDLLAPV-LEVILDQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSH-------GVPEGVVNVWPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
            VL+T+L LV Y IL +DL+  +  + +  +AL  A +N++  V VLL+SPA + +++ ALR  S  S+V+V +LAV I  RAV  VF           P   V + P   W  A  A PI   +F+CHFNVLPV+ EL  PTR RL ++V
Sbjct:  125 VLLTFLTLVAYIILTKDLVGSLGSQFLYGRALSVAEQNVLTIVCVLLVSPALLARSMDALRFTSVFSLVSVLVLAVAITFRAVSVVFKQRDILDVESEPVIPVKLVPTS-WVDATYAFPIISVSFLCHFNVLPVYRELHKPTRHRLKKVV 273          
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Match: M4BKP6_HYAAE (Aa_trans domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BKP6_HYAAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.740e-19
Identity = 63/149 (42.28%), Postives = 88/149 (59.06%), Query Frame = 1
Query:    4 VLVTYLPLVGYTILLRDLLAPVLEVIL-DQALDAAARNIMVTVLVLLISPACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSH---GVPEGVVNV---WPEDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV 429
            VL+T+L LV Y IL RDL+  + E  L ++ +  A +N +  + VLL+SPA + +++ ALR  S  S+++V +LA  I IRA+  V +    G  E  V V      D W  A  A PI   AF+CHFNVLPV+ EL  PTR RL ++V
Sbjct:  114 VLLTFLTLVAYVILTRDLVGSLGEKFLFNRPISGAEQNGLTILCVLLVSPALLARSMNALRFTSVFSLMSVLVLATTITIRAIGTVVADRDDGTVEAAVRVPIKLVPDSWVDAAYAFPIISVAFLCHFNVLPVYRELHKPTRHRLKKIV 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10528.437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW38_ECTSI3.380e-6273.43Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A835ZAV6_9STRA5.100e-3851.02Transmembrane amino acid transporter protein-domai... [more]
A0A329S6M1_9STRA5.350e-2342.18Aa_trans domain-containing protein n=3 Tax=Phytoph... [more]
W2QAE6_PHYPN3.470e-2142.47Aa_trans domain-containing protein n=8 Tax=Phytoph... [more]
A0A6A3ZBD5_9STRA9.010e-2139.33Aa_trans domain-containing protein n=2 Tax=Phytoph... [more]
A0A484DTN2_BRELC1.610e-2040.97Aa_trans domain-containing protein n=1 Tax=Bremia ... [more]
A0A7S2H3F0_9STRA1.340e-1939.58Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
H3HAN2_PHYRM1.400e-1938.00SAP domain-containing protein n=1 Tax=Phytophthora... [more]
A0A421GWR1_9STRA1.830e-1942.00Aa_trans domain-containing protein n=3 Tax=Phytoph... [more]
M4BKP6_HYAAE2.740e-1942.28Aa_trans domain-containing protein n=1 Tax=Hyalope... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10528contigH-elongata_contig10528:647..1727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.1
Seed ortholog evalue1.3e-51
Seed eggNOG ortholog2880.D7FW38
KEGG koko:K14992
KEGG TC2.A.18.6.8
KEGG Pathwayko04727,map04727
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Exons3
Model size429
Cds size429
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10528.437.1prot_H-elongata_contig10528.437.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10528 647..1727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929585.0537605-CDS-H-elongata_contig10528:646..7871622929585.0537605-CDS-H-elongata_contig10528:646..787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10528 647..787 +
1691679080.3551233-CDS-H-elongata_contig10528:646..7871691679080.3551233-CDS-H-elongata_contig10528:646..787Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10528 647..787 +
1622929585.0706096-CDS-H-elongata_contig10528:1235..13131622929585.0706096-CDS-H-elongata_contig10528:1235..1313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10528 1236..1313 +
1691679080.3697724-CDS-H-elongata_contig10528:1235..13131691679080.3697724-CDS-H-elongata_contig10528:1235..1313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10528 1236..1313 +
1622929585.0843854-CDS-H-elongata_contig10528:1517..17271622929585.0843854-CDS-H-elongata_contig10528:1517..1727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10528 1518..1727 +
1691679080.3925734-CDS-H-elongata_contig10528:1517..17271691679080.3925734-CDS-H-elongata_contig10528:1517..1727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10528 1518..1727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10528.437.1

>prot_H-elongata_contig10528.437.1 ID=prot_H-elongata_contig10528.437.1|Name=mRNA_H-elongata_contig10528.437.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
VVLVTYLPLVGYTILLRDLLAPVLEVILDQALDAAARNIMVTVLVLLISP
ACMLQTLGALRHFSFCSVVAVALLAVFIGIRAVDCVFSHGVPEGVVNVWP
EDGWSGALQAIPIYVCAFVCHFNVLPVHGELANPTRERLHRMV
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mRNA from alignment at H-elongata_contig10528:647..1727+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10528.437.1 ID=mRNA_H-elongata_contig10528.437.1|Name=mRNA_H-elongata_contig10528.437.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1081bp|location=Sequence derived from alignment at H-elongata_contig10528:647..1727+ (Himanthalia elongata Himel1 dioecious)
GTAGTGCTTGTGACGTACCTGCCGTTGGTGGGCTACACGATTCTCTTGCG GGACCTGCTAGCCCCCGTCCTGGAGGTTATTTTGGACCAGGCGCTAGACG CTGCGGCGCGAAACATTATGGTTACCGTTCTGGTCTTGCTGGTAAGCATT GTTGGTGGTGGCGTGTTTGCCCTGAGTCGGCAGCGGCGGCGGCGCACGGT GCAGTTAATGCTCATACCACACGCGAACAAGCGCGGGCGAAAATAATCGT GCCAAAAAGAAACTCGCGCGCACGGCAGATATCGAGTTTCTCCTGACTGG TGAATGTTGCTGCTCTCTTCAGCTAGTCGTCGATGGTGTTAGTGTTAGTG TTAGTGTTATTAATATACGTTTGTATTGAAGTTGGAGGGTGTTGCGCCGC GATAAACAAAACAACGCCGCACCACTAAAGCTAGTAGCCGACGAGTAGTT CTTGTGGGAGTTTAGTTAGGCACTAGCATCGTAGTGGGTGGCGATCTCTA CTTTAAAATCTTCGTGAGCTCCGATTCAAAGCCGCTTGTGCTGCCGATGA ACGCCCGCAACCCTTGTCGTATTTTTGACGAAAAAACAGATTTCTCCGGC GTGTATGCTTCAAACACTCGGTGCTCTGCGGCACTTTTCCTTCTGCAGTG TCGTTGCTGTCGCTCTGGTGAGCCATGGACTCCCGATGCCGCCCGTTGAG ACCTTGAACTAGTGTAGACGAGTTAACAGGCTGGTGTACATTTTTCGAGA CTCGATTCGAGACCATTGCATTGTATCACACGAAGTATTTACAACAGCGT AGTTCTTGTTGGGCTTTTGGAAGGAGATATCGTCTAATCTGACCAATTAG GCCAATTTTGACGTTCTGCAGCTGGCGGTGTTCATCGGAATCCGCGCCGT GGACTGCGTTTTCTCCCACGGCGTTCCGGAGGGTGTGGTTAACGTCTGGC CGGAGGATGGGTGGAGCGGGGCGTTGCAGGCCATCCCAATCTACGTATGT GCCTTCGTGTGCCACTTCAACGTCTTGCCCGTGCACGGCGAGCTCGCCAA TCCCACTCGGGAAAGACTCCACCGCATGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig10528:647..1727+

>mRNA_H-elongata_contig10528.437.1 ID=mRNA_H-elongata_contig10528.437.1|Name=mRNA_H-elongata_contig10528.437.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig10528:647..1727+ (Himanthalia elongata Himel1 dioecious)
GTAGTGCTTGTGACGTACCTGCCGTTGGTGGGCTACACGATTCTCTTGCG
GGACCTGCTAGCCCCCGTCCTGGAGGTTATTTTGGACCAGGCGCTAGACG
CTGCGGCGCGAAACATTATGGTTACCGTTCTGGTCTTGCTGGTAGTGCTT
GTGACGTACCTGCCGTTGGTGGGCTACACGATTCTCTTGCGGGACCTGCT
AGCCCCCGTCCTGGAGGTTATTTTGGACCAGGCGCTAGACGCTGCGGCGC
GAAACATTATGGTTACCGTTCTGGTCTTGCTGATTTCTCCGGCGTGTATG
CTTCAAACACTCGGTGCTCTGCGGCACTTTTCCTTCTGCAGTGTCGTTGC
TGTCGCTCTGATTTCTCCGGCGTGTATGCTTCAAACACTCGGTGCTCTGC
GGCACTTTTCCTTCTGCAGTGTCGTTGCTGTCGCTCTGCTGGCGGTGTTC
ATCGGAATCCGCGCCGTGGACTGCGTTTTCTCCCACGGCGTTCCGGAGGG
TGTGGTTAACGTCTGGCCGGAGGATGGGTGGAGCGGGGCGTTGCAGGCCA
TCCCAATCTACGTATGTGCCTTCGTGTGCCACTTCAACGTCTTGCCCGTG
CACGGCGAGCTCGCCAATCCCACTCGGGAAAGACTCCACCGCATGGTGCT
GGCGGTGTTCATCGGAATCCGCGCCGTGGACTGCGTTTTCTCCCACGGCG
TTCCGGAGGGTGTGGTTAACGTCTGGCCGGAGGATGGGTGGAGCGGGGCG
TTGCAGGCCATCCCAATCTACGTATGTGCCTTCGTGTGCCACTTCAACGT
CTTGCCCGTGCACGGCGAGCTCGCCAATCCCACTCGGGAAAGACTCCACC
GCATGGTG
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