mRNA_H-elongata_contig17057.4363.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig17057.4363.1
Unique Name	mRNA_H-elongata_contig17057.4363.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig17057.4363.1 vs. uniprot
Match: D7FK97_ECTSI (Zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK97_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.420e-18
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 3

Query:  987 CEPCEKEFVSELARQAHLAAHVVCQESGCYFSALRKVVNYHHEIKHGQFSGSGFQ 1151
            CEPCEKEF +E ARQAHL +HV C E GC FSALRK+VN HHE KHGQFSGSGFQ
Sbjct:   76 CEPCEKEFTTEAARQAHLQSHVPCPEKGCGFSALRKIVNNHHEAKHGQFSGSGFQ 130

[Close]

BLAST of mRNA_H-elongata_contig17057.4363.1 vs. uniprot
Match: A0A6H5JLR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.380e-17
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 3

Query:  987 CEPCEKEFVSELARQAHLAAHVVCQESGCYFSALRKVVNYHHEIKHGQFSGSGFQ 1151
            CEPCEKEF +E ARQAHL +HV C E GC FSALRK+VN HHE KHGQ SGSGFQ
Sbjct:   59 CEPCEKEFTTETARQAHLQSHVPCPEKGCGFSALRKIVNNHHEAKHGQLSGSGFQ 113

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig17057.4363.1 vs. uniprot

BLAST of mRNA_H-elongata_contig17057.4363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FK97_ECTSI	2.420e-18	78.18	Zinc finger protein n=1 Tax=Ectocarpus siliculosus...	[more]
A0A6H5JLR5_9PHAE	1.380e-17	76.36	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig17057	contig	H-elongata_contig17057:732..1882 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	95.5
Seed ortholog evalue	5.6e-17
Seed eggNOG ortholog	2880.D7FK97
Preferred name	ZC3H4
KEGG ko	ko:K20915
KEGG Pathway	ko04621,map04621
GOs	GO:0000122,GO:0000785,GO:0000976,GO:0000977,GO:0000981,GO:0001012,GO:0001067,GO:0001161,GO:0001162,GO:0001227,GO:0001776,GO:0002260,GO:0002376,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006359,GO:0006366,GO:0006383,GO:0006401,GO:0006725,GO:0006807,GO:0007162,GO:0008023,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010941,GO:0010942,GO:0015030,GO:0016070,GO:0016073,GO:0016604,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022407,GO:0022408,GO:0030155,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033081,GO:0033085,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035327,GO:0035363,GO:0042221,GO:0042592,GO:0042795,GO:0042796,GO:0042981,GO:0043029,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044212,GO:0044213,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045619,GO:0045620,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045945,GO:0046483,GO:0046677,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051241,GO:0051249,GO:0051250,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070228,GO:0070230,GO:0070232,GO:0070234,GO:0070243,GO:0070245,GO:0071025,GO:0071027,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902105,GO:1902106,GO:1902679,GO:1902680,GO:1903037,GO:1903038,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1990837,GO:2000026,GO:2000106,GO:2000108,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.	pre-mRNA cleavage required for polyadenylation
EggNOG OGs	COG5084@1,KOG1040@2759
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001
Hectar predicted targeting category	other localisation
Exons	1
Model size	1151
Cds size	1137
Stop	0
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929993.6367335-UTR-H-elongata_contig17057:731..745	1622929993.6367335-UTR-H-elongata_contig17057:731..745	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig17057 732..745 +
1691679238.4266305-UTR-H-elongata_contig17057:731..745	1691679238.4266305-UTR-H-elongata_contig17057:731..745	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig17057 732..745 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929993.6783636-CDS-H-elongata_contig17057:745..1882	1622929993.6783636-CDS-H-elongata_contig17057:745..1882	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig17057 746..1882 +
1691679238.4421787-CDS-H-elongata_contig17057:745..1882	1691679238.4421787-CDS-H-elongata_contig17057:745..1882	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig17057 746..1882 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig17057.4363.1	prot_H-elongata_contig17057.4363.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig17057 746..1882 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig17057:732..1882+
coding sequence from alignment at H-elongata_contig17057:732..1882+

protein sequence of mRNA_H-elongata_contig17057.4363.1

>prot_H-elongata_contig17057.4363.1 ID=prot_H-elongata_contig17057.4363.1|Name=mRNA_H-elongata_contig17057.4363.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=379bp
MFPSAPQNQSQPSWRPRGQGQHVAMQHQHPLLSQQQQHQQQQHQQRLQHN
QNQPLWGTVIPRGSAPLLVGQQQQIQQQPQPWRGGQHAHPHAAPLQQQQP
LQQRTQFTLGVIHTQPHGVRDQQDRRGASHNEQNHLQGLQSVNPSQPQLL
SQTWPAQLPPAVSYCGPQHPRYTMTGNSSDGGVIAGGVLVSPWGQQLQSS
SVSPTIISSGQIVSSIDNSSSFNGSPDTGGQYSHRGVFAGQRARGTPPSS
PRIDGVSPTHGKKRKPRGTTGTTMPAPKRTPPHPAEDGGGARKRVEAVAA
TSSAGARSQAANVGGGGGGKGVPPCEPCEKEFVSELARQAHLAAHVVCQE
SGCYFSALRKVVNYHHEIKHGQFSGSGFQ

mRNA from alignment at H-elongata_contig17057:732..1882+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig17057.4363.1 ID=mRNA_H-elongata_contig17057.4363.1|Name=mRNA_H-elongata_contig17057.4363.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1151bp|location=Sequence derived from alignment at H-elongata_contig17057:732..1882+ (Himanthalia elongata Himel1 dioecious)
GAGGAGGTGTTAACATGTTTCCCTCTGCTCCACAAAATCAGTCCCAACCG
AGCTGGAGGCCAAGAGGACAGGGGCAGCATGTCGCGATGCAACATCAACA
CCCTCTGCTTTCACAGCAGCAGCAACATCAGCAGCAACAACATCAGCAAC
GGCTGCAGCACAATCAAAACCAACCGTTATGGGGGACAGTGATTCCGCGA
GGATCAGCCCCGCTTTTGGTTGGGCAGCAGCAGCAGATCCAACAACAGCC
ACAGCCGTGGAGGGGTGGGCAACATGCCCACCCGCATGCTGCTCCTCTAC
AACAGCAGCAACCTCTTCAACAGAGAACTCAGTTCACTCTAGGCGTCATT
CACACGCAGCCTCATGGAGTGCGAGACCAGCAAGATCGACGAGGTGCCTC
TCACAACGAGCAGAACCACCTTCAGGGCCTCCAATCCGTCAACCCCTCTC
AACCGCAGCTTCTTTCACAAACCTGGCCGGCCCAACTGCCCCCGGCCGTA
TCATATTGCGGTCCGCAGCACCCACGATACACCATGACGGGAAACTCGAG
TGACGGCGGCGTCATCGCGGGTGGTGTCTTGGTGTCACCTTGGGGTCAAC
AGCTTCAATCAAGCAGCGTTTCCCCGACGATCATCTCAAGCGGTCAGATC
GTCAGCTCTATCGACAACAGCAGCAGCTTCAACGGTAGCCCTGACACCGG
TGGTCAGTACAGCCACAGGGGCGTATTCGCAGGACAAAGAGCACGGGGGA
CTCCTCCGTCGTCTCCGCGAATCGACGGGGTTTCGCCCACGCATGGGAAA
AAGAGGAAGCCGCGCGGGACGACAGGAACGACGATGCCTGCGCCCAAGCG
AACGCCGCCACATCCAGCTGAAGACGGAGGTGGGGCTAGGAAACGAGTGG
AAGCGGTGGCGGCGACTTCGTCTGCGGGGGCACGCTCGCAAGCCGCTAAC
GTTGGTGGTGGTGGCGGTGGCAAAGGAGTTCCGCCGTGTGAGCCGTGCGA
GAAGGAGTTCGTTTCGGAGCTGGCACGACAGGCACACCTCGCGGCGCACG
TGGTGTGCCAGGAGTCCGGGTGTTACTTCTCGGCGCTGCGCAAGGTGGTC
AACTACCACCACGAGATCAAGCACGGGCAGTTCAGTGGCTCCGGGTTCCA
G

Coding sequence (CDS) from alignment at H-elongata_contig17057:732..1882+

>mRNA_H-elongata_contig17057.4363.1 ID=mRNA_H-elongata_contig17057.4363.1|Name=mRNA_H-elongata_contig17057.4363.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2274bp|location=Sequence derived from alignment at H-elongata_contig17057:732..1882+ (Himanthalia elongata Himel1 dioecious)
ATGTTTCCCTCTGCTCCACAAAATCAGTCCCAACCGAGCTGGAGGCCAAG
AGGACAGGGGCAGCATGTCGCGATGCAACATCAACACCCTCTGCTTTCAC
AGCAGCAGCAACATCAGCAGCAACAACATCAGCAACGGCTGCAGCACAAT
CAAAACCAACCGTTATGGGGGACAGTGATTCCGCGAGGATCAGCCCCGCT
TTTGGTTGGGCAGCAGCAGCAGATCCAACAACAGCCACAGCCGTGGAGGG
GTGGGCAACATGCCCACCCGCATGCTGCTCCTCTACAACAGCAGCAACCT
CTTCAACAGAGAACTCAGTTCACTCTAGGCGTCATTCACACGCAGCCTCA
TGGAGTGCGAGACCAGCAAGATCGACGAGGTGCCTCTCACAACGAGCAGA
ACCACCTTCAGGGCCTCCAATCCGTCAACCCCTCTCAACCGCAGCTTCTT
TCACAAACCTGGCCGGCCCAACTGCCCCCGGCCGTATCATATTGCGGTCC
GCAGCACCCACGATACACCATGACGGGAAACTCGAGTGACGGCGGCGTCA
TCGCGGGTGGTGTCTTGGTGTCACCTTGGGGTCAACAGCTTCAATCAAGC
AGCGTTTCCCCGACGATCATCTCAAGCGGTCAGATCGTCAGCTCTATCGA
CAACAGCAGCAGCTTCAACGGTAGCCCTGACACCGGTGGTCAGTACAGCC
ACAGGGGCGTATTCGCAGGACAAAGAGCACGGGGGACTCCTCCGTCGTCT
CCGCGAATCGACGGGGTTTCGCCCACGCATGGGAAAAAGAGGAAGCCGCG
CGGGACGACAGGAACGACGATGCCTGCGCCCAAGCGAACGCCGCCACATC
CAGCTGAAGACGGAGGTGGGGCTAGGAAACGAGTGGAAGCGGTGGCGGCG
ACTTCGTCTGCGGGGGCACGCTCGCAAGCCGCTAACGTTGGTGGTGGTGG
CGGTGGCAAAGGAGTTCCGCCGTGTGAGCCGTGCGAGAAGGAGTTCGTTT
CGGAGCTGGCACGACAGGCACACCTCGCGGCGCACGTGGTGTGCCAGGAG
TCCGGGTGTTACTTCTCGGCGCTGCGCAAGGTGGTCAACTACCACCACGA
GATCAAGCACGGGCAGTTCAGTGGCTCCGGGTTCCAGATGTTTCCCTCTG
CTCCACAAAATCAGTCCCAACCGAGCTGGAGGCCAAGAGGACAGGGGCAG
CATGTCGCGATGCAACATCAACACCCTCTGCTTTCACAGCAGCAGCAACA
TCAGCAGCAACAACATCAGCAACGGCTGCAGCACAATCAAAACCAACCGT
TATGGGGGACAGTGATTCCGCGAGGATCAGCCCCGCTTTTGGTTGGGCAG
CAGCAGCAGATCCAACAACAGCCACAGCCGTGGAGGGGTGGGCAACATGC
CCACCCGCATGCTGCTCCTCTACAACAGCAGCAACCTCTTCAACAGAGAA
CTCAGTTCACTCTAGGCGTCATTCACACGCAGCCTCATGGAGTGCGAGAC
CAGCAAGATCGACGAGGTGCCTCTCACAACGAGCAGAACCACCTTCAGGG
CCTCCAATCCGTCAACCCCTCTCAACCGCAGCTTCTTTCACAAACCTGGC
CGGCCCAACTGCCCCCGGCCGTATCATATTGCGGTCCGCAGCACCCACGA
TACACCATGACGGGAAACTCGAGTGACGGCGGCGTCATCGCGGGTGGTGT
CTTGGTGTCACCTTGGGGTCAACAGCTTCAATCAAGCAGCGTTTCCCCGA
CGATCATCTCAAGCGGTCAGATCGTCAGCTCTATCGACAACAGCAGCAGC
TTCAACGGTAGCCCTGACACCGGTGGTCAGTACAGCCACAGGGGCGTATT
CGCAGGACAAAGAGCACGGGGGACTCCTCCGTCGTCTCCGCGAATCGACG
GGGTTTCGCCCACGCATGGGAAAAAGAGGAAGCCGCGCGGGACGACAGGA
ACGACGATGCCTGCGCCCAAGCGAACGCCGCCACATCCAGCTGAAGACGG
AGGTGGGGCTAGGAAACGAGTGGAAGCGGTGGCGGCGACTTCGTCTGCGG
GGGCACGCTCGCAAGCCGCTAACGTTGGTGGTGGTGGCGGTGGCAAAGGA
GTTCCGCCGTGTGAGCCGTGCGAGAAGGAGTTCGTTTCGGAGCTGGCACG
ACAGGCACACCTCGCGGCGCACGTGGTGTGCCAGGAGTCCGGGTGTTACT
TCTCGGCGCTGCGCAAGGTGGTCAACTACCACCACGAGATCAAGCACGGG
CAGTTCAGTGGCTCCGGGTTCCAG