mRNA_H-elongata_contig105238.436.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE) HSP 1 Score: 234 bits (598), Expect = 3.040e-73 Identity = 118/185 (63.78%), Postives = 144/185 (77.84%), Query Frame = 1
Query: 175 RDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGG-DRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
R T NF GK+GIF FT + AAQRNS +R AGTMET+ VEVTK ++K K++++VFPAIK WPGG R +++Q DN +H I DPD VAAG ADGW+IRL+NQPSNSPDTNILDLGFFN++QSLQ R T TVDEFI EVKR F+ Q P+T KVW + QA+L+ I+LAKG+NTF LPHL+K
Sbjct: 80 RKTNRCCNFTGKLGIFQFTVQRAAQRNSRNRAAGTMETKCVEVTKEVFKRKVVDEVFPAIKARWPGGRGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLINQPSNSPDTNILDLGFFNAVQSLQDRNTPRTVDEFITEVKRAFEEQSPSTHDKVWVSLQAILQ-IILAKGNNTFKLPHLKK 263
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: W2PNG6_PHYPN (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PNG6_PHYPN) HSP 1 Score: 216 bits (550), Expect = 1.250e-66 Identity = 118/249 (47.39%), Postives = 156/249 (62.65%), Query Frame = 1
Query: 4 KFDPMDNIVMVDEKWFFIKKNGQRHYL---RDG---EEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGGDRN--VWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
KFD M ++V +D+KWF++KK GQ Y+ +DG EE PV VQ K +I KVMFL AV RPR +DGK+ I+ QR S++RPAG ETR V +T+ I + ++NDV PAIK WP ++ + +QQDNA H +ADD + AAG ADGW I+L+NQP+ +PD N LDLGFF SIQSLQ +T T DE I+EV + F A +L K + T Q V+E I+ +G N + L HL K
Sbjct: 13 KFDAMHDVVHIDKKWFYVKKIGQHVYVLTGKDGCPTEEPPVQAVQSKRYITKVMFLCAVARPRG------GWDGKVSIWPVVETYITQRRSVNRPAGVEETRPVSITRDISRRILVNDVIPAIKAKWPQDQKHLPIKIQQDNARPHVLADDLEVAAAGCADGWAIKLVNQPAQNPDLNCLDLGFFASIQSLQSKTIPRTPDELIKEVLQSFQASTAVSLNKTFLTLQHVMEQILKNEGRNNYRLGHLHK 255
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA) HSP 1 Score: 220 bits (560), Expect = 7.180e-66 Identity = 111/243 (45.68%), Postives = 155/243 (63.79%), Query Frame = 1
Query: 1 RKFDPMDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGG-DRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
R++ M + V +DEKWF+I + +R YL E P K Q K HI KVMFL AV RPR D+ + + +DGK+G++ F A+R S +R GT T + VTK +Y+ +++ V PAI+ WPG ++VQQDNA H DDP+ +AAG +GWNI+L+ QP+ SPD N+LDLGFFN+IQSLQ +TT T+D+ I+ V+ F+ L K + T Q V+E M + GDN + LPHL+K
Sbjct: 161 RQWHDMLDCVHIDEKWFYITQVNRRFYLWHDEPTPQRKAQSKRHITKVMFLCAVARPRHDSAHRKMWDGKVGLWPFVETQLAKRRSKNRDRGTPVTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVLAAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDAFENLAWRVLDKTFMTLQKVMEEAMRSSGDNVYKLPHLKK 403
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: UPI001C256EBA (uncharacterized protein LOC121779336 n=3 Tax=Salvia splendens TaxID=180675 RepID=UPI001C256EBA) HSP 1 Score: 219 bits (558), Expect = 1.090e-65 Identity = 109/242 (45.04%), Postives = 153/242 (63.22%), Query Frame = 1
Query: 7 FDPMDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVE-VTKAIYKEKMLNDVFPAIKRLWP-GGDRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
F+ M N+V +DEKWF++ K+ R+YL EE P + K I KVMFL AVGRP FDGK+GIF FT V AQRNS +RP GT+ET+ + VT+A+ +E ++N + PAI WP + +++QQDNA H DP+ A ++G+ I+L+ QP NSPDTNILDLGFF +IQSL+ + + VDE ++ V ++ P TL KV+ T Q+VL I+ +G N + +PH+ K
Sbjct: 161 FNEMRNVVHIDEKWFYLTKSADRYYLLPDEEEPQRSCRSKRFITKVMFLCAVGRPHFGPNGETLFDGKLGIFPFTEMVPAQRNSKNRPRGTLETKPIPAVTQAVTREWLINKIIPAIHSKWPTSASKEIYIQQDNAKPHISTTDPEFEEAANSNGFKIQLICQPPNSPDTNILDLGFFRAIQSLKDKKACSNVDELLQNVSMAYEELTPQTLNKVFLTLQSVLSEILEVQGGNNYKIPHMNK 402
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: A0A024UI08_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UI08_9STRA) HSP 1 Score: 215 bits (547), Expect = 1.490e-65 Identity = 109/238 (45.80%), Postives = 147/238 (61.76%), Query Frame = 1
Query: 16 MDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGG-DRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
M + V +DEKWF+I K +R+YL + E P+ K Q K H+ KVMFL AV RPR D +++DGKIG + FT A RNS + G T V VTK +Y+ +++ V PAIK WPG + +WVQQD+A H DD +AAG +DGW+IRL QPS SPD N+LDLG FN+IQSLQ T T++E + V + +D +P L K + T Q V+E ++ GDN + +PH K
Sbjct: 31 MLDTVHIDEKWFYISKVNRRYYLWNDEPVPMRKCQSKRHLMKVMFLTAVARPRFDAHRRKSWDGKIGTWPFTMVRPALRNSKNFKRGDAITEPVVVTKEVYRSFLVDKVIPAIKSRWPGRRSKTIWVQQDSARPHVAVDDAPVLAAGQSDGWDIRLCAQPSQSPDMNVLDLGLFNAIQSLQHHTASYTIEELVLAVSKAYDDLDPLVLDKTFMTLQKVMECVLKMDGDNVYKIPHANK 268
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: A0A6A3XBC6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3XBC6_9STRA) HSP 1 Score: 218 bits (555), Expect = 1.580e-65 Identity = 117/248 (47.18%), Postives = 156/248 (62.90%), Query Frame = 1
Query: 7 FDPMDNIVMVDEKWFFIKKNGQRHYL---RDG---EEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGGDRN--VWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
FDPM ++V +DEKWF++KK GQR Y+ +DG EEAPV VQ K HIKKVMFL AV RPR D +DGKIG++ QR S++RPAG E + V + + + + ++ DV PAIK WP + + +QQDNA H + +D + +AAG ADGWNIRL NQP+ SPD N LDLG+ SIQSLQ T+ T ++ I+EV+ F TL K + T Q V++ IM +G N + LPH+ K
Sbjct: 101 FDPMFDVVHIDEKWFYVKKIGQRVYVLTGKDGTPLEEAPVQYVQSKRHIKKVMFLCAVARPRGD------WDGKIGLWPVVETYITQRWSVNRPAGVEEIKPVSMNRTLARRMLVTDVIPAIKAKWPQDQKATLIRIQQDNARPHVLEEDAEVLAAGRADGWNIRLKNQPAQSPDLNCLDLGYLCSIQSLQSHTSPRTTEDLIKEVELTFAETTAETLNKTFLTLQLVMKEIMTNEGRNNYRLPHIHK 342
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE) HSP 1 Score: 222 bits (566), Expect = 1.600e-65 Identity = 116/213 (54.46%), Postives = 146/213 (68.54%), Query Frame = 1
Query: 4 KFDPMDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGGDRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAK 642
KF + + +DEKWF+I K GQR+Y +GE P+ KVQHKSH+ KVMFLAAV RPR D++ +R FDGKIGI+ FT + AAQRN + AGTM T VEV + +YK K+ N+VFP I+ +P ++ QQ+NA H +DPD VAA I L+NQP NSPD NILDLGFFNSIQSLQ RTT TV+E + EV+R AQ+P TL +
Sbjct: 50 KFHHFFDFLHLDEKWFYICKQGQRYYFYEGEHLPIRKVQHKSHVIKVMFLAAVARPRYDSSRSRQFDGKIGIYPFTVQRAAQRNGRNMAAGTMVTHSVEVNRTLYK-KLNNNVFPDIRAKFPSSPI-IFAQQENAPGHRAMEDPDVVAAAGQGAGRIELVNQPPNSPDCNILDLGFFNSIQSLQDRTTPTTVEELVAEVERALWAQKPETLGR 260
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: UPI001C264D25 (uncharacterized protein LOC121774216 n=2 Tax=Salvia splendens TaxID=180675 RepID=UPI001C264D25) HSP 1 Score: 216 bits (550), Expect = 6.830e-65 Identity = 109/243 (44.86%), Postives = 153/243 (62.96%), Query Frame = 1
Query: 4 KFDPMDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVE-VTKAIYKEKMLNDVFPAIKRLWP-GGDRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
+F M N+V +DEKWF++ K R+YL E+ P + K +I KVMF+ AV RP+ D +DGK+GIF FT + AQR S +R GTMET+ + VTKA+ ++ +++ + PAIK WP G +++++QQDNA H A DP+ A +DG++I+L+ QP NSPDTNILDLGFF +IQSLQ TVDE + V F P TL KV+ + QA L I+ +G N + +PH+ K
Sbjct: 124 QFQGMHNVVHIDEKWFYMTKVSDRYYLLPDEDEPYRSCKSKRYITKVMFMCAVSRPQFDANGQATYDGKVGIFPFTEVLPAQRKSKNRARGTMETKAINSVTKAVMRDCLIHKIIPAIKAKWPVGASKDIYIQQDNATPHITAMDPEFQAVAKSDGFDIQLICQPPNSPDTNILDLGFFRAIQSLQHEKPCKTVDELVGNVCSSFTELSPQTLNKVFLSLQACLTEILHCRGGNGYKVPHINK 366
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: A0A6A4B6L5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4B6L5_9STRA) HSP 1 Score: 212 bits (540), Expect = 1.190e-64 Identity = 114/248 (45.97%), Postives = 151/248 (60.89%), Query Frame = 1
Query: 7 FDPMDNIVMVDEKWFFIKKNGQRHYLRDG------EEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVEVTKAIYKEKMLNDVFPAIKRLWPGGDRNVWV--QQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
FDPM +V +DEKWF++KK G+ Y+ G EE V VQ K HIKKVMFL AV RPR D +DGK+GI+ + QR S +RPAG E V +T+ IY++ ++NDV PAIK WP + + + QQDNA H + +D +AAG ++GW + LNQP+ SPD N LDL FF+SIQSLQ +T T ++ IEEV+ F TL K + T Q+V+ IM G NT+ +PHL K
Sbjct: 22 FDPMYEVVHLDEKWFYMKKVGKHVYILTGKDDVPSEEPSVQFVQSKQHIKKVMFLCAVARPRGD------WDGKVGIWPVVKNYRTQRWSRNRPAGIDEVHPVTMTREIYRDMLINDVIPAIKEKWPQAQKGIPIRLQQDNAKPHVLENDAAVIAAGCSNGWTMYPLNQPAQSPDLNCLDLSFFSSIQSLQSQTRPRTTEDLIEEVEYAFHETSADTLNKTFLTLQSVMLEIMKCGGSNTYKIPHLHK 263
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Match: UPI002008F034 (uncharacterized protein LOC125206616 n=4 Tax=Salvia TaxID=21880 RepID=UPI002008F034) HSP 1 Score: 216 bits (551), Expect = 1.230e-64 Identity = 109/243 (44.86%), Postives = 152/243 (62.55%), Query Frame = 1
Query: 4 KFDPMDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVGRPRRDTTNNRNFDGKIGIFSFTRRVAAQRNSMHRPAGTMETRMVE-VTKAIYKEKMLNDVFPAIKRLWP-GGDRNVWVQQDNALAHNIADDPDTVAAGTADGWNIRLLNQPSNSPDTNILDLGFFNSIQSLQGRTTLNTVDEFIEEVKRVFDAQEPATLAKVWTTYQAVLEHIMLAKGDNTFALPHLRK 726
++ M N+V +DEKWF++ K R+YL E+ P + K +I KVMF+ AV RP +DGK+GIF FT + AQR S +RP GTMET+ + VTK + ++ ++N + PAIK WP +++++QQDNA H A DPD AA +DG+ I+L+ QP+NSPDTNILDLGFF +IQSLQ TVDE + V F P TL +V+ + QA L I+L +G N + +PH+ K
Sbjct: 161 QYQSMHNVVHIDEKWFYMTKASDRYYLLPDEDEPYRSCKSKRYITKVMFMCAVSRPHFGMDGQATYDGKVGIFPFTEVLPAQRKSKNRPRGTMETKAIHSVTKEVMRDCLINKIIPAIKAKWPVWASKDIYIQQDNATPHITAMDPDFQAAANSDGFKIQLICQPANSPDTNILDLGFFRAIQSLQYEKPCKTVDELVGNVCSSFAELSPQTLNRVFLSLQACLTEILLCRGGNGYKVPHINK 403 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105238.436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig105238.436.1 >prot_H-elongata_contig105238.436.1 ID=prot_H-elongata_contig105238.436.1|Name=mRNA_H-elongata_contig105238.436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp MDNIVMVDEKWFFIKKNGQRHYLRDGEEAPVSKVQHKSHIKKVMFLAAVGback to top mRNA from alignment at H-elongata_contig105238:907..1632- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig105238.436.1 ID=mRNA_H-elongata_contig105238.436.1|Name=mRNA_H-elongata_contig105238.436.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=726bp|location=Sequence derived from alignment at H-elongata_contig105238:907..1632- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig105238:907..1632- >mRNA_H-elongata_contig105238.436.1 ID=mRNA_H-elongata_contig105238.436.1|Name=mRNA_H-elongata_contig105238.436.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig105238:907..1632- (Himanthalia elongata Himel1 dioecious)back to top |