mRNA_H-elongata_contig170427.4359.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170427.4359.1
Unique NamemRNA_H-elongata_contig170427.4359.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig170427.4359.1 vs. uniprot
Match: A0A8F0K065_9PHAE (Ribosomal protein S2 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0K065_9PHAE)

HSP 1 Score: 448 bits (1152), Expect = 7.520e-159
Identity = 226/233 (97.00%), Postives = 228/233 (97.85%), Query Frame = 1
Query:    1 MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWLGGMLTNWVTIKSRIDRLNHLEQQEKLNTFVNLPKKEASDLKKELEKLKKYFNGVKGMKQIPDIIVIIDQKREIIAIQEALSLDIPIISILDTNCDPNLATIPIPGNDDSIRSIKYIIQNLADSIRLGQKNSIKVQK 699
            MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWLGGMLTNWVTIKSRIDRLN+LE QEKLN FVNLPKKEASDLKKELEKLKKYFNGVK MKQIPDIIVIIDQKREIIAIQEALSLDIPIISILDTNCDPNLATIPIPGNDDSIRSIKYIIQN+ADSIR GQKNSIKV K
Sbjct:    1 MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWLGGMLTNWVTIKSRIDRLNYLEDQEKLNLFVNLPKKEASDLKKELEKLKKYFNGVKAMKQIPDIIVIIDQKREIIAIQEALSLDIPIISILDTNCDPNLATIPIPGNDDSIRSIKYIIQNIADSIRSGQKNSIKVTK 233          
BLAST of mRNA_H-elongata_contig170427.4359.1 vs. uniprot
Match: D1GJH5_FUCVE (30S ribosomal protein S2, chloroplastic n=41 Tax=Phaeophyceae TaxID=2870 RepID=D1GJH5_FUCVE)

HSP 1 Score: 407 bits (1046), Expect = 1.000e-142
Identity = 200/231 (86.58%), Postives = 220/231 (95.24%), Query Frame = 1
Query:    1 MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWLGGMLTNWVTIKSRIDRLNHLEQQEKLNTFVNLPKKEASDLKKELEKLKKYFNGVKGMKQIPDIIVIIDQKREIIAIQEALSLDIPIISILDTNCDPNLATIPIPGNDDSIRSIKYIIQNLADSIRLGQKNSIKV 693
            MAKIELAQLL+AGVHFGHKA RWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKA+ KNQTFLFVGTKK+ +SLIA+EA  CGAFYINHRWLGG LTNW+TIK RI RLN+LE+QEKL +F NLPKKEAS+LKKELEKLKKYFNG+KGMK+IPDI+VIIDQKREIIAIQEALSL+IPIISI+DTNCDPNLATIPIPGNDDSIRSIKYII+N++DSI LGQ+NS+KV
Sbjct:    1 MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKASAKNQTFLFVGTKKRASSLIASEAQKCGAFYINHRWLGGTLTNWITIKGRIQRLNNLEEQEKLTSFKNLPKKEASNLKKELEKLKKYFNGIKGMKKIPDILVIIDQKREIIAIQEALSLNIPIISIIDTNCDPNLATIPIPGNDDSIRSIKYIIKNISDSICLGQQNSLKV 231          
BLAST of mRNA_H-elongata_contig170427.4359.1 vs. uniprot
Match: A0A1I9LVT4_9PHAE (30S ribosomal protein S2, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVT4_9PHAE)

HSP 1 Score: 405 bits (1041), Expect = 5.800e-142
Identity = 199/230 (86.52%), Postives = 220/230 (95.65%), Query Frame = 1
Query:    1 MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWLGGMLTNWVTIKSRIDRLNHLEQQEKLNTFVNLPKKEASDLKKELEKLKKYFNGVKGMKQIPDIIVIIDQKREIIAIQEALSLDIPIISILDTNCDPNLATIPIPGNDDSIRSIKYIIQNLADSIRLGQKNSIK 690
            MAKIELAQLLDAGVHFGHKA+RWNPKMFPYIYAERNGIHILDLIQT EFLKRACDFSK+A+ K QTFLFVGTKKQ+ASLIA EA  CGAFYINHRWLGGMLTNW+TIKSRIDRLNHLE+QEK+N+F +LPKKEA++LKKELEKLKKYFNGVKGMK +PDI+VIIDQKREIIAI+EALSL+IPIISILDTNCDP+LAT+PIPGNDDSIRSIKYIIQN+ DSI LGQ++S+K
Sbjct:    1 MAKIELAQLLDAGVHFGHKAHRWNPKMFPYIYAERNGIHILDLIQTMEFLKRACDFSKRASEKKQTFLFVGTKKQSASLIAIEAQKCGAFYINHRWLGGMLTNWITIKSRIDRLNHLEEQEKINSFNSLPKKEAANLKKELEKLKKYFNGVKGMKTLPDILVIIDQKREIIAIKEALSLNIPIISILDTNCDPDLATLPIPGNDDSIRSIKYIIQNITDSICLGQQSSLK 230          
BLAST of mRNA_H-elongata_contig170427.4359.1 vs. uniprot
Match: A0A141BSD4_9PHAE (30S ribosomal protein S2, chloroplastic n=12 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSD4_9PHAE)

HSP 1 Score: 402 bits (1032), Expect = 1.360e-140
Identity = 197/230 (85.65%), Postives = 218/230 (94.78%), Query Frame = 1
Query:    1 MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWLGGMLTNWVTIKSRIDRLNHLEQQEKLNTFVNLPKKEASDLKKELEKLKKYFNGVKGMKQIPDIIVIIDQKREIIAIQEALSLDIPIISILDTNCDPNLATIPIPGNDDSIRSIKYIIQNLADSIRLGQKNSIK 690
            MAKIELAQLL+AGVHFGHKA RWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKA+ KNQTFLFVGTK+ TASL+A+EA  CGAFYINHRWLGG LTNWVTIK RI+RLN+LE+QEKL +F NLPKKEAS LKKELEKLKKYFNGVKGMK++PDI++IIDQKREIIAIQEA+SL+IPIISI+DTNCDPNLATIPIPGNDDSIRSIKYII+N+ADSI LGQ++ +K
Sbjct:    1 MAKIELAQLLEAGVHFGHKAQRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKASSKNQTFLFVGTKRHTASLVASEAQKCGAFYINHRWLGGTLTNWVTIKERIERLNNLEEQEKLTSFKNLPKKEASYLKKELEKLKKYFNGVKGMKKLPDILIIIDQKREIIAIQEAISLNIPIISIIDTNCDPNLATIPIPGNDDSIRSIKYIIKNIADSICLGQQSYLK 230          
BLAST of mRNA_H-elongata_contig170427.4359.1 vs. uniprot
Match: A0A8F0JWX3_9PHAE (Ribosomal protein S2 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JWX3_9PHAE)

HSP 1 Score: 398 bits (1023), Expect = 2.990e-139
Identity = 198/229 (86.46%), Postives = 213/229 (93.01%), Query Frame = 1
Query:    1 MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWLGGMLTNWVTIKSRIDRLNHLEQQEKLNTFVNLPKKEASDLKKELEKLKKYFNGVKGMKQIPDIIVIIDQKREIIAIQEALSLDIPIISILDTNCDPNLATIPIPGNDDSIRSIKYIIQNLADSIRLGQKNSI 687
            MAKIELAQLLDAGVH GHKA+RWNPKMFPYIY ERNG+HILDLIQTTEFLKRACDFSKKAA+KNQTFLFVGTKKQ ASLIANEA  CGAFY+NHRWLGGMLTNWVTIK+RI RL  LE+QEK N F NLPKKE S+LKKELEKLKKYFNGVKGM++IPDIIVIIDQKREIIAIQEALSL+IPIISILDTNCDP+L TIPIPGNDD+I SIKYII+NL DSI LGQ+NS+
Sbjct:    1 MAKIELAQLLDAGVHLGHKAHRWNPKMFPYIYTERNGVHILDLIQTTEFLKRACDFSKKAAQKNQTFLFVGTKKQAASLIANEAQRCGAFYVNHRWLGGMLTNWVTIKNRIHRLKDLEEQEKNNFFKNLPKKEVSNLKKELEKLKKYFNGVKGMEKIPDIIVIIDQKREIIAIQEALSLEIPIISILDTNCDPSLTTIPIPGNDDAISSIKYIIKNLVDSICLGQQNSL 229          
BLAST of mRNA_H-elongata_contig170427.4359.1 vs. uniprot
Match: A0A7S6U9Z1_9STRA (30S ribosomal protein S2, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z1_9STRA)

HSP 1 Score: 350 bits (899), Expect = 2.560e-120
Identity = 170/229 (74.24%), Postives = 202/229 (88.21%), Query Frame = 1
Query:    1 MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWLGGMLTNWVTIKSRIDRLNHLEQQEKLNTFVNLPKKEASDLKKELEKLKKYFNGVKGMKQIPDIIVIIDQKREIIAIQEALSLDIPIISILDTNCDPNLATIPIPGNDDSIRSIKYIIQNLADSIRLGQKNSI 687
            MAKI+LAQLL AGVHFGHKA RWNPKMFPYIY ERNG+HILDLIQT E LKRACDF + AA++N+TFLFVGTKKQ +S+IA+EAT CGA Y+NHRWLGGMLTNWVT+KSRI+RL +LE+Q+  N+F NLPKKE + L+KELE+L+KYFNGVK M+Q PDII IIDQKREI A++EA SL+IPII++LDTNC+P+L TIPIPGNDD+IRSI+YI Q LADSI LGQ  ++
Sbjct:    1 MAKIKLAQLLKAGVHFGHKAYRWNPKMFPYIYTERNGVHILDLIQTAELLKRACDFCEIAAKQNKTFLFVGTKKQASSIIASEATRCGANYVNHRWLGGMLTNWVTLKSRIERLKNLEKQDSENSFENLPKKEVAKLRKELERLRKYFNGVKQMQQRPDIIFIIDQKREITAVKEARSLNIPIITLLDTNCNPDLTTIPIPGNDDAIRSIRYITQKLADSICLGQLTTV 229          
BLAST of mRNA_H-elongata_contig170427.4359.1 vs. uniprot
Match: A0A2I4Q2U3_9PHAE (30S ribosomal protein S2, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2U3_9PHAE)

HSP 1 Score: 347 bits (890), Expect = 5.800e-119
Identity = 167/231 (72.29%), Postives = 198/231 (85.71%), Query Frame = 1
Query:    1 MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWLGGMLTNWVTIKSRIDRLNHLEQQEKLNTFVNLPKKEASDLKKELEKLKKYFNGVKGMKQIPDIIVIIDQKREIIAIQEALSLDIPIISILDTNCDPNLATIPIPGNDDSIRSIKYIIQNLADSIRLGQKNSIKV 693
            M KIELA LLDAGVH GHKANRWNPKMFPYIY ERN +HI+DLIQT +FL+ AC FS+ AAR N+TFLF+GT K TA LI  E+  CGAFYINHRWLGGMLTNW TIK+RI+RL +LE+QE+L TF N+PKKEA+ LKKELEKLKKYF+GVK MK++PD I+IIDQ+ +IIA++EALSL+I +ISILDTNCDP+LATIPIPGNDDSI+S+KY+I +L DSI LG K   K+
Sbjct:    1 MKKIELAHLLDAGVHLGHKANRWNPKMFPYIYTERNQVHIIDLIQTIKFLRLACTFSENAARNNETFLFIGTNKYTAPLITAESERCGAFYINHRWLGGMLTNWGTIKNRIERLKYLEEQERLTTFKNIPKKEAAKLKKELEKLKKYFSGVKEMKKLPDNIIIIDQRNDIIAVKEALSLNIQVISILDTNCDPDLATIPIPGNDDSIKSLKYLISSLVDSICLGHKTDKKI 231          
BLAST of mRNA_H-elongata_contig170427.4359.1 vs. uniprot
Match: A0A8E5XRD1_9PHAE (30S ribosomal protein S2, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRD1_9PHAE)

HSP 1 Score: 339 bits (869), Expect = 9.130e-116
Identity = 161/230 (70.00%), Postives = 196/230 (85.22%), Query Frame = 1
Query:    1 MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWLGGMLTNWVTIKSRIDRLNHLEQQEKLNTFVNLPKKEASDLKKELEKLKKYFNGVKGMKQIPDIIVIIDQKREIIAIQEALSLDIPIISILDTNCDPNLATIPIPGNDDSIRSIKYIIQNLADSIRLGQKNSIK 690
            MAKIELAQLL+AGVHFGHKA RWNPKMFP+IYAERNGIHILDLIQT + LK ACDFS K A+ N+TFLF+GTK+Q A++IA+ +  CGAFY+NHRWLGGMLTNW TIK RI+RL  LE QEK++ F   PKKEA+ LK EL KL+K+FNGVK M+++PD+++IIDQKREI A++EA SL+IPII+ILDTNCDP+L T+ IP NDD+++SIKYII  L DSI LGQ+N +K
Sbjct:    1 MAKIELAQLLEAGVHFGHKAKRWNPKMFPHIYAERNGIHILDLIQTAQLLKVACDFSTKIAKNNKTFLFIGTKRQAAAVIAHASQRCGAFYVNHRWLGGMLTNWTTIKRRIERLKELEVQEKIDDFAAFPKKEAAGLKNELRKLQKHFNGVKEMEELPDVVIIIDQKREITAVKEAQSLNIPIITILDTNCDPSLTTLGIPANDDAVKSIKYIIDTLVDSICLGQQNILK 230          
BLAST of mRNA_H-elongata_contig170427.4359.1 vs. uniprot
Match: A0A023HA35_9STRA (30S ribosomal protein S2, chloroplastic n=1 Tax=Coscinodiscus radiatus TaxID=33642 RepID=A0A023HA35_9STRA)

HSP 1 Score: 308 bits (790), Expect = 9.260e-104
Identity = 149/225 (66.22%), Postives = 183/225 (81.33%), Query Frame = 1
Query:    1 MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWLGGMLTNWVTIKSRIDRLNHLEQQEKLNTFVNLPKKEASDLKKELEKLKKYFNGVKGMKQIPDIIVIIDQKREIIAIQEALSLDIPIISILDTNCDPNLATIPIPGNDDSIRSIKYIIQNLADSIRLGQ 675
            MA+I LAQLL+AGVHFGHKA RWNPKMFPYIY ERN IHILDLIQ+ + LK A  + + AA  N+TFLF+GTK+Q ++LIA EA  C ++Y+NHRWLGGMLTNWVT+K+RI RL  LEQQE  N F  LPKKEAS  K ELEKL+++ NG+K M+++PDI +I+DQKREI A++E   L IPIISILDTNCDP+L  IPIPGNDD++RSIK I+ +LA+SI LG+
Sbjct:    1 MAEINLAQLLEAGVHFGHKAYRWNPKMFPYIYTERNNIHILDLIQSAQLLKEANSYLESAAHDNKTFLFIGTKRQASNLIAQEAKRCNSYYVNHRWLGGMLTNWVTLKNRITRLKLLEQQEAENVFNLLPKKEASLRKAELEKLRRHLNGIKDMEKVPDIAIIVDQKREITAVRECRKLGIPIISILDTNCDPDLVDIPIPGNDDAVRSIKLILNSLANSINLGR 225          
BLAST of mRNA_H-elongata_contig170427.4359.1 vs. uniprot
Match: A0A2U9NMU4_9STRA (30S ribosomal protein S2, chloroplastic n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A2U9NMU4_9STRA)

HSP 1 Score: 306 bits (785), Expect = 5.340e-103
Identity = 149/230 (64.78%), Postives = 184/230 (80.00%), Query Frame = 1
Query:    1 MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFLKRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWLGGMLTNWVTIKSRIDRLNHLEQQEKLNTFVNLPKKEASDLKKELEKLKKYFNGVKGMKQIPDIIVIIDQKREIIAIQEALSLDIPIISILDTNCDPNLATIPIPGNDDSIRSIKYIIQNLADSIRLGQKNSIK 690
            MA+I LAQLL+AGVHFGHKA+RWNPKMFPYIY ERN IHILDL+Q+ + LK A  + + AA +N+TF+ +GTK+Q +SLIA EA NC ++Y+NHRWLGGMLTNWVT+KSRI RL  LEQQE    F  LPKKEAS  K ELEKL++  NGVK M+++PDI ++IDQKRE+ AI+E   L IP+ISILDTNCDP+L  IPIPGNDD++RSIK I+++L DSI  G  N+ K
Sbjct:    1 MAEISLAQLLEAGVHFGHKASRWNPKMFPYIYTERNNIHILDLVQSAQLLKEANSYVQSAAEQNKTFILIGTKRQASSLIAQEAKNCNSYYVNHRWLGGMLTNWVTLKSRIARLRLLEQQEADQVFDLLPKKEASLRKTELEKLRRSLNGVKTMERLPDIAIVIDQKREMTAIRECRKLGIPVISILDTNCDPDLVDIPIPGNDDAVRSIKLILKSLTDSINAGYANNKK 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170427.4359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0K065_9PHAE7.520e-15997.00Ribosomal protein S2 n=1 Tax=Desmarestia aculeata ... [more]
D1GJH5_FUCVE1.000e-14286.5830S ribosomal protein S2, chloroplastic n=41 Tax=P... [more]
A0A1I9LVT4_9PHAE5.800e-14286.5230S ribosomal protein S2, chloroplastic n=1 Tax=Pl... [more]
A0A141BSD4_9PHAE1.360e-14085.6530S ribosomal protein S2, chloroplastic n=12 Tax=S... [more]
A0A8F0JWX3_9PHAE2.990e-13986.46Ribosomal protein S2 n=1 Tax=Protohalopteris sp. T... [more]
A0A7S6U9Z1_9STRA2.560e-12074.2430S ribosomal protein S2, chloroplastic n=1 Tax=Sc... [more]
A0A2I4Q2U3_9PHAE5.800e-11972.2930S ribosomal protein S2, chloroplastic n=1 Tax=Di... [more]
A0A8E5XRD1_9PHAE9.130e-11670.0030S ribosomal protein S2, chloroplastic n=1 Tax=Is... [more]
A0A023HA35_9STRA9.260e-10466.2230S ribosomal protein S2, chloroplastic n=1 Tax=Co... [more]
A0A2U9NMU4_9STRA5.340e-10364.7830S ribosomal protein S2, chloroplastic n=1 Tax=Rh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170427contigH-elongata_contig170427:98..805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score411.8
Seed ortholog evalue2.2e-112
Seed eggNOG ortholog2880.D1J790
Preferred namerps2
KEGG rclassRC02795
KEGG koko:K02108,ko:K02967,ko:K03046
KEGG TC3.A.2.1
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00190,ko00195,ko00230,ko00240,ko01100,ko03010,ko03020,map00190,map00195,map00230,map00240,map01100,map03010,map03020
KEGG ModuleM00157,M00178,M00179,M00183
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0031974,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0052@1,KOG0832@2759
EC2.7.7.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,br01611,ko00000,ko00001,ko00002,ko00194,ko01000,ko03011,ko03021,ko03110,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size708
Cds size708
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.3467236-CDS-H-elongata_contig170427:97..8051622929993.3467236-CDS-H-elongata_contig170427:97..805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170427 98..805 -
1691679238.3525622-CDS-H-elongata_contig170427:97..8051691679238.3525622-CDS-H-elongata_contig170427:97..805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170427 98..805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170427.4359.1prot_H-elongata_contig170427.4359.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170427 98..805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170427.4359.1

>prot_H-elongata_contig170427.4359.1 ID=prot_H-elongata_contig170427.4359.1|Name=mRNA_H-elongata_contig170427.4359.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
MAKIELAQLLDAGVHFGHKANRWNPKMFPYIYAERNGIHILDLIQTTEFL
KRACDFSKKAARKNQTFLFVGTKKQTASLIANEATNCGAFYINHRWLGGM
LTNWVTIKSRIDRLNHLEQQEKLNTFVNLPKKEASDLKKELEKLKKYFNG
VKGMKQIPDIIVIIDQKREIIAIQEALSLDIPIISILDTNCDPNLATIPI
PGNDDSIRSIKYIIQNLADSIRLGQKNSIKVQKTT*
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mRNA from alignment at H-elongata_contig170427:98..805-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170427.4359.1 ID=mRNA_H-elongata_contig170427.4359.1|Name=mRNA_H-elongata_contig170427.4359.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=708bp|location=Sequence derived from alignment at H-elongata_contig170427:98..805- (Himanthalia elongata Himel1 dioecious)
ATGGCTAAGATTGAATTGGCTCAACTTTTAGATGCAGGTGTACATTTTGG ACATAAAGCTAATCGATGGAATCCAAAAATGTTTCCTTATATATACGCAG AACGTAATGGTATACATATTTTAGATTTAATTCAGACAACAGAATTTTTA AAAAGAGCCTGTGATTTTAGTAAAAAAGCAGCAAGAAAAAATCAGACATT TTTATTTGTGGGAACAAAAAAACAAACTGCTTCTTTAATTGCAAATGAAG CTACAAATTGTGGTGCGTTTTATATAAATCATCGATGGTTAGGTGGTATG TTAACAAATTGGGTAACTATAAAAAGTAGAATTGATCGTTTGAATCATTT AGAGCAACAAGAAAAATTAAATACATTTGTAAATTTACCTAAAAAAGAGG CATCAGATTTAAAAAAAGAATTAGAAAAACTTAAAAAATATTTTAATGGT GTTAAAGGGATGAAACAAATTCCTGATATTATAGTGATAATTGATCAAAA GCGTGAAATTATTGCTATTCAAGAAGCACTTTCTTTAGATATACCCATTA TTTCAATTCTAGATACTAATTGTGATCCTAATTTAGCAACAATACCTATA CCTGGAAATGATGATTCTATTAGGTCAATAAAATATATTATTCAAAATCT AGCCGATAGTATTCGATTAGGACAGAAAAATTCTATAAAAGTTCAAAAAA CAACATGA
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Coding sequence (CDS) from alignment at H-elongata_contig170427:98..805-

>mRNA_H-elongata_contig170427.4359.1 ID=mRNA_H-elongata_contig170427.4359.1|Name=mRNA_H-elongata_contig170427.4359.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig170427:98..805- (Himanthalia elongata Himel1 dioecious)
ATGGCTAAGATTGAATTGGCTCAACTTTTAGATGCAGGTGTACATTTTGG
ACATAAAGCTAATCGATGGAATCCAAAAATGTTTCCTTATATATACGCAG
AACGTAATGGTATACATATTTTAGATTTAATTCAGACAACAGAATTTTTA
AAAAGAGCCTGTGATTTTAGTAAAAAAGCAGCAAGAAAAAATCAGACATT
TTTATTTGTGGGAACAAAAAAACAAACTGCTTCTTTAATTGCAAATGAAG
CTACAAATTGTGGTGCGTTTTATATAAATCATCGATGGTTAGGTGGTATG
TTAACAAATTGGGTAACTATAAAAAGTAGAATTGATCGTTTGAATCATTT
AGAGCAACAAGAAAAATTAAATACATTTGTAAATTTACCTAAAAAAGAGG
CATCAGATTTAAAAAAAGAATTAGAAAAACTTAAAAAATATTTTAATGGT
GTTAAAGGGATGAAACAAATTCCTGATATTATAGTGATAATTGATCAAAA
GCGTGAAATTATTGCTATTCAAGAAGCACTTTCTTTAGATATACCCATTA
TTTCAATTCTAGATACTAATTGTGATCCTAATTTAGCAACAATACCTATA
CCTGGAAATGATGATTCTATTAGGTCAATAAAATATATTATTCAAAATCT
AGCCGATAGTATTCGATTAGGACAGAAAAATTCTATAAAAGTTCAAAAAA
CAACATGAATGGCTAAGATTGAATTGGCTCAACTTTTAGATGCAGGTGTA
CATTTTGGACATAAAGCTAATCGATGGAATCCAAAAATGTTTCCTTATAT
ATACGCAGAACGTAATGGTATACATATTTTAGATTTAATTCAGACAACAG
AATTTTTAAAAAGAGCCTGTGATTTTAGTAAAAAAGCAGCAAGAAAAAAT
CAGACATTTTTATTTGTGGGAACAAAAAAACAAACTGCTTCTTTAATTGC
AAATGAAGCTACAAATTGTGGTGCGTTTTATATAAATCATCGATGGTTAG
GTGGTATGTTAACAAATTGGGTAACTATAAAAAGTAGAATTGATCGTTTG
AATCATTTAGAGCAACAAGAAAAATTAAATACATTTGTAAATTTACCTAA
AAAAGAGGCATCAGATTTAAAAAAAGAATTAGAAAAACTTAAAAAATATT
TTAATGGTGTTAAAGGGATGAAACAAATTCCTGATATTATAGTGATAATT
GATCAAAAGCGTGAAATTATTGCTATTCAAGAAGCACTTTCTTTAGATAT
ACCCATTATTTCAATTCTAGATACTAATTGTGATCCTAATTTAGCAACAA
TACCTATACCTGGAAATGATGATTCTATTAGGTCAATAAAATATATTATT
CAAAATCTAGCCGATAGTATTCGATTAGGACAGAAAAATTCTATAAAAGT
TCAAAAAACAACATGA
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