mRNA_H-elongata_contig170424.4358.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170424.4358.1
Unique NamemRNA_H-elongata_contig170424.4358.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig170424.4358.1 vs. uniprot
Match: A0A6H5L5H3_9PHAE (Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5H3_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 3.000e-41
Identity = 83/108 (76.85%), Postives = 86/108 (79.63%), Query Frame = 1
Query:    1 SGAGKTHTMMGSERA---RREGDPEEVSGIVPQSLVELFRLLEERAGAGSGEEGEIETWSVRAGYLQVYNEQIMDLLSPKSKPLKINEDPGKGIVVVAGLREMVRTGS 315
            +GAGKTHTMMGSER    R   +P EVSGIVPQSLVELFRLL  RA  GSGEE E ETWSVR GYLQVYNEQIMDLLS  SKPLKINEDP KG+VVVAGL EM  T S
Sbjct:   48 TGAGKTHTMMGSERVVGVRAGDEPTEVSGIVPQSLVELFRLLAARAEVGSGEEDEAETWSVRVGYLQVYNEQIMDLLSDSSKPLKINEDPAKGVVVVAGLAEMEVTSS 155          
BLAST of mRNA_H-elongata_contig170424.4358.1 vs. uniprot
Match: A0A397AAE3_9STRA (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AAE3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.470e-21
Identity = 59/134 (44.03%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    1 SGAGKTHTMMGSERARREGDPE----------------EVSGIVPQSLVELFRLL------EERAGAGSGEEGEIETWSVRAGYLQVYNEQIMDLLSPKSKPLKINEDPGKGIVVVAGLREM-VRTGSPLSELL 333
            +GAGKTHTMMGSER     D +                 V GI+P +L ++FRL+      EE A    G   +   WSV   YL+VYNEQI DLL+P S+PL + EDP KG+V VAGL  + V T S + +LL
Sbjct:    4 TGAGKTHTMMGSERDGSGDDNQLGHXXXXXXXXXXNVPHVDGIIPHALTDIFRLINSARADEEDASVAEGLGFQ---WSVVVTYLEVYNEQIRDLLNPSSRPLALREDPVKGVVHVAGLHHVTVETSSQVLQLL 134          
BLAST of mRNA_H-elongata_contig170424.4358.1 vs. uniprot
Match: A0A485LD64_9STRA (Kinesin-like protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LD64_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.100e-20
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    1 SGAGKTHTMMGSER--------ARREGDPE--EVSGIVPQSLVELFRLLEERAGAGSG---EEGEIETWSVRAGYLQVYNEQIMDLLSPKSKPLKINEDPGKGIVVVAGLREM-VRTGSPLSELL 333
            +GAGKTHTMMGSER           + D E  +V GI+P SL ++FRL+ ER          +G    W+V   YL+VYNEQI DLL+P ++PL + EDP KG+V VAGL  + VR  + + +LL
Sbjct:  156 TGAGKTHTMMGSERDGCTDNNQVMDDDDDEVPQVDGIIPHSLTDIFRLIAERRAEQQAMMLSDGTGFRWNVVVTYLEVYNEQIRDLLNPSNRPLALREDPVKGVVNVAGLHHVEVRNSAEVLQLL 280          
BLAST of mRNA_H-elongata_contig170424.4358.1 vs. uniprot
Match: A0A024UPZ7_9STRA (Kinesin-like protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UPZ7_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.420e-19
Identity = 56/115 (48.70%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    1 SGAGKTHTMMGSERARREG----------DPEEVSGIVPQSLVELFRLL----EERAGAGSGEEGEIETWSVRAGYLQVYNEQIMDLLSPKSKPLKINEDPGKGIVVVAGLREMV 303
            +GAGKTHTMMGSER   +           D   V GI+P SL ++FRL+    EE A A   E G    W+V   YL+VYNEQI DLL P ++PL + EDP KG+V VAGL  +V
Sbjct:  110 TGAGKTHTMMGSERDGSDDNQLDHHDDDDDVPHVDGIIPHSLTDIFRLISRAREEEAEAAVAE-GLGFNWTVVVTYLEVYNEQIRDLLHPSNRPLALREDPVKGVVHVAGLHHVV 223          
BLAST of mRNA_H-elongata_contig170424.4358.1 vs. uniprot
Match: A0A397FLK9_9STRA (Kinesin motor domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FLK9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.560e-19
Identity = 59/130 (45.38%), Postives = 75/130 (57.69%), Query Frame = 1
Query:    1 SGAGKTHTMMGSERARREGDPE------------EVSGIVPQSLVELFRLL------EERAGAGSGEEGEIETWSVRAGYLQVYNEQIMDLLSPKSKPLKINEDPGKGIVVVAGLREM-VRTGSPLSELL 333
            +GAGKTHTMMGSER     D +             V GI+P +L ++FRL+      EE A    G   +   WSV   YL+VYNEQI DLL+P S+PL + EDP KG+V VAGL  + V T S + +LL
Sbjct:  802 TGAGKTHTMMGSERDGSGDDNQLGHHDDDDDNVPHVDGIIPHALTDIFRLINSARADEEDASVAEGLGFQ---WSVVVTYLEVYNEQIRDLLNPSSRPLALREDPVKGVVHVAGLHHVTVETSSQVLQLL 928          
BLAST of mRNA_H-elongata_contig170424.4358.1 vs. uniprot
Match: A0A1V9ZQM7_9STRA (Kinesin-like protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQM7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.840e-19
Identity = 55/126 (43.65%), Postives = 77/126 (61.11%), Query Frame = 1
Query:    1 SGAGKTHTMMGSERARR-----------EGDPEEVSGIVPQSLVELFRLL---EERAGAGSGEEGEIETWSVRAGYLQVYNEQIMDLLSPKSKPLKINEDPGKGIVVVAGLREM-VRTGSPLSELL 333
            +GAGKTHTMMG  R  +           +G P+  +GI+PQSL ++FRL+   +E   A    EG   +W+V   YL+VYNE I DLL+PKSK L + ED  KG+V V+GLR + V + + + +LL
Sbjct:  102 TGAGKTHTMMGKHRDSKSYDEFIDDEYEDGVPD--TGIIPQSLSDIFRLIHIRQEEEKAQHENEGGSSSWTVTVSYLEVYNEAIRDLLNPKSKNLSLREDAQKGVVHVSGLRHVDVASATDVLDLL 225          
BLAST of mRNA_H-elongata_contig170424.4358.1 vs. uniprot
Match: A0A8K1CIS1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIS1_PYTOL)

HSP 1 Score: 88.6 bits (218), Expect = 4.630e-18
Identity = 54/124 (43.55%), Postives = 71/124 (57.26%), Query Frame = 1
Query:    1 SGAGKTHTMMGSERARR------EGDPEEVSGIVPQSLVELFRLL------EERAGAGSGEEGEIETWSVRAGYLQVYNEQIMDLLSPKSKPLKINEDPGKGIVVVAGLR-EMVRTGSPLSELL 333
            +GAGKTHTMMGSER         + D  +V GI+P +L ++FR++      EE      G   E   W V   YL+VYNEQI DLL P ++ L + EDP +GIV VAGL  E V +   + +LL
Sbjct:  116 TGAGKTHTMMGSERDGLGEFDDFDDDDYQVDGIIPHALTDIFRIIRCRQEEEEYLNIAQGSTFE---WKVLVSYLEVYNEQIRDLLQPSTRALSLREDPARGIVQVAGLHHEEVNSVGQVMQLL 236          
BLAST of mRNA_H-elongata_contig170424.4358.1 vs. uniprot
Match: W7TJK0_9STRA (Kinesin-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJK0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.730e-18
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    1 SGAGKTHTMMGSERARREGDPEEVSGIVPQSLVELFRLLEERAGAGSGEEGEIETWSVRAGYLQVYNEQIMDLLSP---KSKPLKINEDPGKGIVVVAGLREM-VRTGSPLSELL 333
            +GAGKT TMMGS  A   G+   V+G++PQSL ++F  +E R             W V   Y++VYNEQI DL+ P   + +PL++ EDP KG+VVVAGL EM VR  + + +LL
Sbjct:  117 TGAGKTFTMMGSSCAAA-GESAPVTGVIPQSLSDVFATIERRKRTAPPNS----QWQVFCSYMEVYNEQIYDLIGPGAGRGQPLQLREDPSKGVVVVAGLPEMLVRDTAQVLDLL 226          
BLAST of mRNA_H-elongata_contig170424.4358.1 vs. uniprot
Match: A0A835YL84_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL84_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.100e-17
Identity = 54/112 (48.21%), Postives = 65/112 (58.04%), Query Frame = 1
Query:    1 SGAGKTHTMMGSERARREGDPEE-------------VSGIVPQSLVELFRLLEERAGAGSGEEGEIETWSVRAGYLQVYNEQIMDLLSPKSKPLKINEDPGKGIVVVAGLRE 297
            +GAGKTHTM  S      G                  SGI+PQSLV++FR +E R  AGSG     ETWSVR  YL+VYNEQI+DLL P    L++ ED  +G+V VAGL E
Sbjct:  137 TGAGKTHTMGSSGTTCGSGXXXXXXXXXXXXXXXXXASGIMPQSLVDVFRGVEARRRAGSG--ARAETWSVRVSYLEVYNEQILDLLEPGGC-LQVCEDKARGVVKVAGLAE 245          
BLAST of mRNA_H-elongata_contig170424.4358.1 vs. uniprot
Match: A0A024FZR4_9STRA (Kinesin-like protein n=13 Tax=Albugo candida TaxID=65357 RepID=A0A024FZR4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 4.060e-17
Identity = 55/136 (40.44%), Postives = 69/136 (50.74%), Query Frame = 1
Query:    1 SGAGKTHTMMGSER---------------ARREGDPEEVSGIVPQSLVELFRLLEERA---GAGSGEEGEIETWSVRAGYLQVYNEQIMDLLSPKSKPLKINEDPGKGIVVVAGLR-EMVRTGSPLSELLVNRLRY 351
            +GAGKTHTMMGSER                + +     V GI+PQ+L ++F+ +  R    G    + G I  W V   YL+VYNEQI DLL P   PL + ED  KGIV VAGL  E   +   + E L    RY
Sbjct:  113 TGAGKTHTMMGSERDGLILPSECSEEMEDLQSQDSVLSVDGIIPQALADIFQSIHNRKAEEGQLRMQNGTIFEWEVMISYLEVYNEQIRDLLRPSDTPLALREDTAKGIVHVAGLHYENAHSAEEVLEFLRRGNRY 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170424.4358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H3_9PHAE3.000e-4176.85Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A397AAE3_9STRA3.470e-2144.03Kinesin motor domain-containing protein (Fragment)... [more]
A0A485LD64_9STRA3.100e-2045.60Kinesin-like protein n=1 Tax=Aphanomyces stellatus... [more]
A0A024UPZ7_9STRA1.420e-1948.70Kinesin-like protein n=1 Tax=Aphanomyces invadans ... [more]
A0A397FLK9_9STRA1.560e-1945.38Kinesin motor domain-containing protein n=7 Tax=Ap... [more]
A0A1V9ZQM7_9STRA6.840e-1943.65Kinesin-like protein n=1 Tax=Thraustotheca clavata... [more]
A0A8K1CIS1_PYTOL4.630e-1843.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W7TJK0_9STRA4.730e-1845.22Kinesin-like protein n=2 Tax=Monodopsidaceae TaxID... [more]
A0A835YL84_9STRA3.100e-1748.21Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A024FZR4_9STRA4.060e-1740.44Kinesin-like protein n=13 Tax=Albugo candida TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170424contigH-elongata_contig170424:14..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue7.7e-31
Seed eggNOG ortholog2880.D7FYK8
KEGG koko:K10395,ko:K10396,ko:K10401
KEGG Pathwayko04144,ko04728,map04144,map04728
GOsGO:0000070,GO:0000226,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007019,GO:0007049,GO:0007059,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022411,GO:0031109,GO:0031122,GO:0032984,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043624,GO:0043933,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048285,GO:0051261,GO:0051276,GO:0071840,GO:0097435,GO:0098813,GO:0140014,GO:1903047
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0242@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKinesin motor domain
Ec32 orthologEc-02_004390.1
Exons2
Model size360
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170424.4358.1prot_H-elongata_contig170424.4358.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170424 14..502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.2607894-CDS-H-elongata_contig170424:13..1811622929993.2607894-CDS-H-elongata_contig170424:13..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170424 14..181 -
1691679238.3106308-CDS-H-elongata_contig170424:13..1811691679238.3106308-CDS-H-elongata_contig170424:13..181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170424 14..181 -
1622929993.2770944-CDS-H-elongata_contig170424:334..5021622929993.2770944-CDS-H-elongata_contig170424:334..502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170424 335..502 -
1691679238.322722-CDS-H-elongata_contig170424:334..5021691679238.322722-CDS-H-elongata_contig170424:334..502Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170424 335..502 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.294567-UTR-H-elongata_contig170424:502..5261622929993.294567-UTR-H-elongata_contig170424:502..526Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170424 503..526 -
1691679238.340411-UTR-H-elongata_contig170424:502..5261691679238.340411-UTR-H-elongata_contig170424:502..526Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig170424 503..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170424.4358.1

>prot_H-elongata_contig170424.4358.1 ID=prot_H-elongata_contig170424.4358.1|Name=mRNA_H-elongata_contig170424.4358.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MMGSERARREGDPEEVSGIVPQSLVELFRLLEERAGAGSGEEGEIETWSV
RAGYLQVYNEQIMDLLSPKSKPLKINEDPGKGIVVVAGLREMVRTGSPLS
ELLVNRLRYCL*
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mRNA from alignment at H-elongata_contig170424:14..526-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170424.4358.1 ID=mRNA_H-elongata_contig170424.4358.1|Name=mRNA_H-elongata_contig170424.4358.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at H-elongata_contig170424:14..526- (Himanthalia elongata Himel1 dioecious)
TCAGGCGCTGGCAAGACTCACACAATGATGGGATCGGAGAGAGCCCGACG CGAGGGTGACCCCGAGGAAGTTTCCGGAATCGTTCCCCAGTCTCTCGTCG AACTGTTCCGGCTGCTGGAGGAGCGCGCGGGAGCTGGCAGTGGAGAAGAG GGGGAAATCGAGACGTGGTCCGTCCGTGCCGGTTACTTGCAGGTACGCGT GAGGGTTGGATTACGTTTTTGGTTGCATCGAAAATATGTAGGAGGAGCTT TGGGAGATGTTTTCCGGCACTCGAAGGCTTGTCGACCGTCTATCCGCACG TTTTCGAAAACCTGACATTAATTCAATCCTTTCTCTGAGTTGCAGGTATA TAACGAGCAGATAATGGACCTGCTCAGCCCGAAGTCGAAGCCGCTGAAGA TTAATGAGGACCCCGGCAAGGGAATCGTCGTCGTTGCGGGACTGCGCGAG ATGGTACGCACAGGCAGCCCGTTGTCTGAGCTTCTTGTAAATCGCCTTCG ATACTGTTTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig170424:14..526-

>mRNA_H-elongata_contig170424.4358.1 ID=mRNA_H-elongata_contig170424.4358.1|Name=mRNA_H-elongata_contig170424.4358.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig170424:14..526- (Himanthalia elongata Himel1 dioecious)
ATGATGGGATCGGAGAGAGCCCGACGCGAGGGTGACCCCGAGGAAGTTTC
CGGAATCGTTCCCCAGTCTCTCGTCGAACTGTTCCGGCTGCTGGAGGAGC
GCGCGGGAGCTGGCAGTGGAGAAGAGGGGGAAATCGAGACGTGGTCCGTC
CGTGCCGGTTACTTGCAGATGATGGGATCGGAGAGAGCCCGACGCGAGGG
TGACCCCGAGGAAGTTTCCGGAATCGTTCCCCAGTCTCTCGTCGAACTGT
TCCGGCTGCTGGAGGAGCGCGCGGGAGCTGGCAGTGGAGAAGAGGGGGAA
ATCGAGACGTGGTCCGTCCGTGCCGGTTACTTGCAGGTATATAACGAGCA
GATAATGGACCTGCTCAGCCCGAAGTCGAAGCCGCTGAAGATTAATGAGG
ACCCCGGCAAGGGAATCGTCGTCGTTGCGGGACTGCGCGAGATGGTACGC
ACAGGCAGCCCGTTGTCTGAGCTTCTTGTAAATCGCCTTCGATACTGTTT
GTGAGTATATAACGAGCAGATAATGGACCTGCTCAGCCCGAAGTCGAAGC
CGCTGAAGATTAATGAGGACCCCGGCAAGGGAATCGTCGTCGTTGCGGGA
CTGCGCGAGATGGTACGCACAGGCAGCCCGTTGTCTGAGCTTCTTGTAAA
TCGCCTTCGATACTGTTTGTGA
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