prot_H-elongata_contig170280.4352.1 (polypeptide) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE) HSP 1 Score: 171 bits (433), Expect = 6.130e-45 Identity = 84/145 (57.93%), Postives = 104/145 (71.72%), Query Frame = 0
Query: 52 DKAMQVSTVCGFCDGLGCHTTFNAPSGKAAPVMHSTCPFAPRKDARNPAVQLSLKSARAGLETSPCTNIVMKCIFCFQETYIWKYGMTDHVARCHNEDTLVEAGTERANKFKKDYTVSEMEENKVLKKFKAGKLRRRRDTDSLPP 196
+K VSTVCGFC G+GC +T + P G+A P++HSTCP APR DAR AV L+L SARA +TSPCTN+V+KC C Q+ YIW YGM DHV RCH + LV GT A+KFK+ T+SE E+ KVL K KAG+ RRR ++LPP
Sbjct: 1083 NKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGT-GADKFKEACTISESEKAKVLHKVKAGRPRRRDQGNTLPP 1226
BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE) HSP 1 Score: 157 bits (398), Expect = 2.900e-41 Identity = 80/132 (60.61%), Postives = 93/132 (70.45%), Query Frame = 0
Query: 44 YVGGHILKDKAMQVSTVCGFCDGLGCHTTFNAPSGKAAPVMHSTCPFAPRKDARNPAVQLSLKSARAGLETSPCTNIVMKCIFCFQETYIWKYGMTDHVARCHNEDTLVEAGTERANKFKKDYTVSEMEENK 175
Y GGHILKDK VST CGFC G+G TT + P GKA P++HSTCP APR DAR AV L+L SARAG +TS CTN+V KC FC Q YIWKY M+DH+ RCH D LV GT A+ FK+ T+SE E+ K
Sbjct: 401 YRGGHILKDK---VSTACGFCGGVGRPTTIHDPPGKARPLVHSTCPSAPRSDARQEAVALNLSSARAGSDTSLCTNMVFKCFFCSQYNYIWKYSMSDHITRCHQADVLVAEGT-GADNFKETCTISESEKAK 528
BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI) HSP 1 Score: 109 bits (273), Expect = 7.770e-26 Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 0
Query: 120 IVMKCIFCFQETYIWKYGMTDHVARCHNEDTLVEAGTERANKFKKDYTVSEMEENKVLKKFKAGKLRRR-RDTDSLPPGARRSVSGNGAVASGVPGTR 216
+V+KC+FC Q+TYIWKYGM++HV RCH ED LV AGT ++FK+ YT+SE E+ KVL+KFKAG+ RRR + ++LP GA S GNG + GTR
Sbjct: 1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGT-TVDRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTGALGSTEGNGTFGRNMSGTR 97
BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Match: A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 4.240e-20 Identity = 51/98 (52.04%), Postives = 64/98 (65.31%), Query Frame = 0
Query: 120 IVMKCIFCFQETYIWKYGMTDHVARCHNEDTLVEAGTERANKFKKDYTVSEMEENKVLKKFKAGKLRRR-RDTDSLPPGARRSVSGNGAVASGVPGTR 216
+V+KC C Q YIWKYGM++HV R H ED V AGT +KFK+ Y++SE E+ K L KFKAGK R+R + + LPPGA GNGA + GTR
Sbjct: 1 MVLKCFVCSQNNYIWKYGMSEHVTRRHQEDMRVAAGT-GVDKFKEAYSISESEKAKALHKFKAGKPRQRGQGNEVLPPGALGRTEGNGASGRNMAGTR 97 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170280.4352.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_H-elongata_contig170280.4352.1 ID=prot_H-elongata_contig170280.4352.1|Name=mRNA_H-elongata_contig170280.4352.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=250bpback to top |