mRNA_H-elongata_contig105212.435.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105212.435.1
Unique NamemRNA_H-elongata_contig105212.435.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig105212.435.1 vs. uniprot
Match: A0A6H5KN26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN26_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 1.280e-62
Identity = 119/218 (54.59%), Postives = 154/218 (70.64%), Query Frame = 2 
Query:   80 TKKNVKRIRVSLEINDYMDQHPMSVIFKAVQGAPSGFTLGDIENAGVCTILDGNHRVAALRQIKGDDFLVPCQCYSDIEDANVKRIRFIPFCITARCATTNCCSLFLACNDSTSTFAERTIYDRLYFFRFIYDGAESDLKVARRNGRTLYVQDKDLKMYYLKAKQPVPSDQPLRNWLKAVKGISPDALKTLKDLVKSEDKSMDLSLLSLAYISKDVFI 733
            ++K+VK ++ S++  D+M+  P+SVIFK V  AP  FT  D + AG  ++LDGNHR+ AL+ +K  DFLVPCQCYSDI+DANVKRI                  +  ACND+TSTFAERTIYDRLYFF  +Y GA++ L+ +R   R   V  KD+K +Y KAKQ VPSD  LR+WLKAV+GI  +AL  LKDLV+SEDKS+DL+L++LAYISKD F+
Sbjct:   19 SQKSVKLLQQSIQSQDFMENQPLSVIFKGVHQAP--FTQEDADKAGPASVLDGNHRLVALKAVKPGDFLVPCQCYSDIKDANVKRI------------------VADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQ--VNPKDIKEFYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFM 214
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BLAST of mRNA_H-elongata_contig105212.435.1 vs. uniprot
Match: D7G124_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G124_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 3.680e-46
Identity = 98/218 (44.95%), Postives = 133/218 (61.01%), Query Frame = 2 
Query:   80 TKKNVKRIRVSLEINDYMDQHPMSVIFKAVQGAPSGFTLGDIENAGVCTILDGNHRVAALRQIKGDDFLVPCQCYSDIEDANVKRIRFIPFCITARCATTNCCSLFLACNDSTSTFAERTIYDRLYFFRFIYDGAESDLKVARRNGRTLYVQDKDLKMYYLKAKQPVPSDQPLRNWLKAVKGISPDALKTLKDLVKSEDKSMDLSLLSLAYISKDVFI 733
            ++++VK ++ S++  D+M+    +      +G+ S F       +     L       A + +   DFLVPCQCYSDI+DANVKRI                  +  ACND+TSTFAERTIYDRLYFF  +Y GA++ L+ +R   R   V  KD+K  Y KAKQ VPSD  LR+WLKAV+GI  +AL  L+DLV+SEDKS+DL+L++LAYISK  F+
Sbjct:   91 SQRSVKLLQQSIQSQDFMEHGEPAAFCDIQRGSSSAFHTRGCRQSRARQRLGREPSFVAPKAVMPGDFLVPCQCYSDIKDANVKRI------------------VADACNDATSTFAERTIYDRLYFFSSLYKGAQASLETSRSRSRQ--VNPKDIKELYAKAKQAVPSDSTLRSWLKAVRGIKEEALTALEDLVESEDKSVDLNLVTLAYISKVDFM 288
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BLAST of mRNA_H-elongata_contig105212.435.1 vs. uniprot
Match: D8LJG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG8_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.180e-13
Identity = 41/63 (65.08%), Postives = 52/63 (82.54%), Query Frame = 2 
Query:  545 LKMYYLKAKQPVPSDQPLRNWLKAVKGISPDALKTLKDLVKSEDKSMDLSLLSLAYISKDVFI 733
            L +  L+AKQ VPSD  LR+WLKAV+GI  +AL  LKDLV+SEDKS+DL+L++LAYISKD F+
Sbjct:   13 LSLSLLQAKQAVPSDSTLRSWLKAVRGIKEEALTALKDLVESEDKSIDLNLVTLAYISKDDFM 75
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BLAST of mRNA_H-elongata_contig105212.435.1 vs. uniprot
Match: A0A6H5K2Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Z9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.210e-9
Identity = 56/197 (28.43%), Postives = 86/197 (43.65%), Query Frame = 2 
Query:   92 VKRIRVSLEINDYMDQHPMSVIFKAVQGAPSGFTLGDIENAGVCTILDGNHRVAALRQIKGDDFLVPCQCYSDIEDANVKRIRFIPFCITARCATTNCCSLFLACNDSTSTFAERTIYDRLYFFRFIYDGA---ESDLKVARR---NGRTL-YVQDKDLKMYYLKAKQPVPSDQPLRNWLKAVKGISPDALKTLKDL 661
            V+ +  S++ + ++D  P  +     +G      L     A    ++DGNHR+AA +++ G+D L+ C CY  I D   ++I                      CN +T+TF  RTIYD+LYF+  +       ES+   ARR   N R+   V    L   +  A    P+   LR W+  V   S  AL  L+ L
Sbjct:   70 VQEVVESIQSHGWVDSFPRVMFSDLTEGQEMTVELAATLRA---VVIDGNHRLAACKEVYGEDRLIRCTCYRFIADGFARQIASD------------------VCNVTTATFQARTIYDQLYFYNRMMTSLMAQESESSSARRRPSNSRSKPSVTAAKLATCWKGAGSQAPAANTLRQWISIVNDTSQGALVALRAL 245
[Close]
BLAST of mRNA_H-elongata_contig105212.435.1 vs. uniprot
Match: A0A6H5KJN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.620e-7
Identity = 36/124 (29.03%), Postives = 61/124 (49.19%), Query Frame = 2 
Query:   92 VKRIRVSLEINDYMDQHPMSVIFKAVQGAPSGFTLGDIENAGVCTILDGNHRVAALRQIKGDDFLVPCQCYSDIEDANVKRIRFIPFCITARCATTNCCSLFLACNDSTSTFAERTIYDRLYFF 463
            V+ +  S++ + ++D  P  +     +G      L    +A    ++DGNHR+AA +++ G+D L+ C CY  I D+  ++I                      CN +T+TF  RTIYD+LYF+
Sbjct:   70 VQEVVESIQSHGWVDSFPRVMFSDLTEGQEMTVELAATLHA---VVIDGNHRLAACKEVYGEDRLIRCTCYRFIADSFARQIASD------------------VCNVTTATFRARTIYDQLYFY 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105212.435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KN26_9PHAE1.280e-6254.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G124_ECTSI3.680e-4644.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJG8_ECTSI2.180e-1365.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2Z9_9PHAE2.210e-928.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJN8_9PHAE2.620e-729.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105212contigH-elongata_contig105212:733..2242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size733
Cds size603
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105212.435.1prot_H-elongata_contig105212.435.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105212 863..2242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.877897-UTR-H-elongata_contig105212:732..8621622929584.877897-UTR-H-elongata_contig105212:732..862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105212 733..862 +
1691679080.2877002-UTR-H-elongata_contig105212:732..8621691679080.2877002-UTR-H-elongata_contig105212:732..862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105212 733..862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.8917868-CDS-H-elongata_contig105212:862..10691622929584.8917868-CDS-H-elongata_contig105212:862..1069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105212 863..1069 +
1691679080.2958562-CDS-H-elongata_contig105212:862..10691691679080.2958562-CDS-H-elongata_contig105212:862..1069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105212 863..1069 +
1622929584.9022877-CDS-H-elongata_contig105212:1200..14281622929584.9022877-CDS-H-elongata_contig105212:1200..1428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105212 1201..1428 +
1691679080.3056417-CDS-H-elongata_contig105212:1200..14281691679080.3056417-CDS-H-elongata_contig105212:1200..1428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105212 1201..1428 +
1622929584.9206314-CDS-H-elongata_contig105212:2074..22421622929584.9206314-CDS-H-elongata_contig105212:2074..2242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105212 2075..2242 +
1691679080.3137507-CDS-H-elongata_contig105212:2074..22421691679080.3137507-CDS-H-elongata_contig105212:2074..2242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105212 2075..2242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105212.435.1

>prot_H-elongata_contig105212.435.1 ID=prot_H-elongata_contig105212.435.1|Name=mRNA_H-elongata_contig105212.435.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=201bp
MDQHPMSVIFKAVQGAPSGFTLGDIENAGVCTILDGNHRVAALRQIKGDD
FLVPCQCYSDIEDANVKRIRFIPFCITARCATTNCCSLFLACNDSTSTFA
ERTIYDRLYFFRFIYDGAESDLKVARRNGRTLYVQDKDLKMYYLKAKQPV
PSDQPLRNWLKAVKGISPDALKTLKDLVKSEDKSMDLSLLSLAYISKDVF
I
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mRNA from alignment at H-elongata_contig105212:733..2242+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105212.435.1 ID=mRNA_H-elongata_contig105212.435.1|Name=mRNA_H-elongata_contig105212.435.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1510bp|location=Sequence derived from alignment at H-elongata_contig105212:733..2242+ (Himanthalia elongata Himel1 dioecious)
ATCCTAAAAGAACACAGCCTCGGGATCTACAACAAAAAACTCGGAAGGCT
GCAGCACACGAGCCATGCCCGGCAGCTAAACTAAAAAAAATGTGAAACGA
ATTCGTGTTTCGCTGGAAATAAACGATTATATGGATCAACACCCGATGTC
GGTCATATTCAAAGCGGTCCAAGGAGCTCCTTCGGGCTTCACGCTGGGGG
ATATCGAAAATGCGGGGGTTTGCACAATCTTGGACGGAAACCACCGAGTA
GCCGCACTCAGGCAGATCAAAGGAGATGATTTTCTTGTCCCGTGCCAATG
CTACTCAGATATTGAAGACGCTAACGTGAAAAGGATAGTGGCAGACGGTA
AGATGGCCGAATGTAAAAATATTATCTGTTTTTTACTTTTTATTTTTGCT
CTAAGAAATGGATGATGTCTGCATGATGAATGAATGGAGAAGACAGCGCT
AAATAAAGTTTGGATAAGCGTTTTATTCCTTTTTGCATTACCGCTCGCTG
CGCTACAACTAACTGCTGCTCTCTTTTTTTGGCATGTAACGACTCCACAT
CGACTTTCGCGGAGCGAACGATCTATGACCGACTGTACTTTTTCCGCTTC
ATCTACGATGGAGCAGAAAGCGACCTGAAGGTCGCGAGGCGAAATGGAAG
AACACTGTATGTTCAAGACAAAGATCTCAAGATGTATTACCTGAAGGTAC
CTCTATCTGCACCGGAGAACGTACTGCCTGCATAGACTTATAAAGTAATC
TTCTTATCTCAAAATAAAAAGTATGTATTGGTGATAATATATTACAAGTA
TAAACTATTGTTTTGGAATAGTAGCTTATGTTTGAATAGCGTGGTGGATT
AGATACGCCGATGACTCGACCAAAAGCCTTTCTTGTTGTGATTACATCAA
TACCGTTTTAAGTGGTGGCTGAGGTGTCAACAAACTGTTCTAAAATATTC
CTAGTTTTGTCTCTGGTGAAACGCGCTGTTTGTCCCAGTTATGTCCACTT
TCGGACCTGACGATGGTTGGTCCCCTCGACCACACCTTTCATGGTGCTGA
GAAGGAGTGGATGTTCGAAAGTTCTTAATGAGTTCATAGTTCATATGTTT
TTCATTTAAAATGTTCCACATTTTCGCAGATTCATGGATCAATTCTGTGA
TTGGGCGAGCTTTTTCCTCTCGACAAGGTTATGTATTCGAGCCGCTAGAA
ATCGAATATGCGCCGCGGTTAGAACAAGAAGACGTCATGGTATAGGCTCC
CATTCTTTCGCAAATTACCGTTTGTAATATCACCAAAACTATGTTATAGC
AAGATGACATAGTCATGTCAATTCCCTTCTCATTTTCTTTAGGCAAAACA
GCCGGTGCCAAGCGATCAGCCCCTTCGTAACTGGCTCAAAGCCGTGAAGG
GTATTTCTCCGGACGCACTCAAGACGTTGAAGGACCTGGTGAAGTCAGAG
GATAAATCTATGGACCTCAGCCTCCTTTCACTAGCTTATATCAGCAAGGA
TGTTTTTATT
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Coding sequence (CDS) from alignment at H-elongata_contig105212:733..2242+

>mRNA_H-elongata_contig105212.435.1 ID=mRNA_H-elongata_contig105212.435.1|Name=mRNA_H-elongata_contig105212.435.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1206bp|location=Sequence derived from alignment at H-elongata_contig105212:733..2242+ (Himanthalia elongata Himel1 dioecious)
ATGGATCAACACCCGATGTCGGTCATATTCAAAGCGGTCCAAGGAGCTCC
TTCGGGCTTCACGCTGGGGGATATCGAAAATGCGGGGGTTTGCACAATCT
TGGACGGAAACCACCGAGTAGCCGCACTCAGGCAGATCAAAGGAGATGAT
TTTCTTGTCCCGTGCCAATGCTACTCAGATATTGAAGACGCTAACGTGAA
AAGGATAATGGATCAACACCCGATGTCGGTCATATTCAAAGCGGTCCAAG
GAGCTCCTTCGGGCTTCACGCTGGGGGATATCGAAAATGCGGGGGTTTGC
ACAATCTTGGACGGAAACCACCGAGTAGCCGCACTCAGGCAGATCAAAGG
AGATGATTTTCTTGTCCCGTGCCAATGCTACTCAGATATTGAAGACGCTA
ACGTGAAAAGGATACGTTTTATTCCTTTTTGCATTACCGCTCGCTGCGCT
ACAACTAACTGCTGCTCTCTTTTTTTGGCATGTAACGACTCCACATCGAC
TTTCGCGGAGCGAACGATCTATGACCGACTGTACTTTTTCCGCTTCATCT
ACGATGGAGCAGAAAGCGACCTGAAGGTCGCGAGGCGAAATGGAAGAACA
CTGTATGTTCAAGACAAAGATCTCAAGATGTATTACCTGAAGCGTTTTAT
TCCTTTTTGCATTACCGCTCGCTGCGCTACAACTAACTGCTGCTCTCTTT
TTTTGGCATGTAACGACTCCACATCGACTTTCGCGGAGCGAACGATCTAT
GACCGACTGTACTTTTTCCGCTTCATCTACGATGGAGCAGAAAGCGACCT
GAAGGTCGCGAGGCGAAATGGAAGAACACTGTATGTTCAAGACAAAGATC
TCAAGATGTATTACCTGAAGGCAAAACAGCCGGTGCCAAGCGATCAGCCC
CTTCGTAACTGGCTCAAAGCCGTGAAGGGTATTTCTCCGGACGCACTCAA
GACGTTGAAGGACCTGGTGAAGTCAGAGGATAAATCTATGGACCTCAGCC
TCCTTTCACTAGCTTATATCAGCAAGGATGTTTTTATTGCAAAACAGCCG
GTGCCAAGCGATCAGCCCCTTCGTAACTGGCTCAAAGCCGTGAAGGGTAT
TTCTCCGGACGCACTCAAGACGTTGAAGGACCTGGTGAAGTCAGAGGATA
AATCTATGGACCTCAGCCTCCTTTCACTAGCTTATATCAGCAAGGATGTT
TTTATT
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