mRNA_H-elongata_contig170233.4349.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170233.4349.1
Unique NamemRNA_H-elongata_contig170233.4349.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig170233.4349.1 vs. uniprot
Match: D7FL94_ECTSI (Non-specific serine/threonine protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL94_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.270e-44
Identity = 75/101 (74.26%), Postives = 86/101 (85.15%), Query Frame = 1 
Query:    1 PAFETSGLALQSRGRQDAYIQCAVGMRNMYHKCRLVHGDLSEYNLLFMDGILIFIDVSQSMENDHPRSMDFLRMDCRNVTSFFKRKGAHPITARSLFDFVM 303
            PA     + L  +  +DAYIQC +GMRNMY KCRLVHGDLSEYNLL+M+G+LIFIDVSQSMENDHPR+MDFLRMDCRNVT+FFK+KGA P  ARSLFDFV+
Sbjct:  324 PAPRLRDVQLGPKKMKDAYIQCVIGMRNMYQKCRLVHGDLSEYNLLYMEGLLIFIDVSQSMENDHPRAMDFLRMDCRNVTAFFKKKGAQPAAARSLFDFVI 424
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BLAST of mRNA_H-elongata_contig170233.4349.1 vs. uniprot
Match: UPI000180C30B (serine/threonine-protein kinase RIO1 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=UPI000180C30B)

HSP 1 Score: 119 bits (298), Expect = 1.750e-29
Identity = 53/100 (53.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 PAFETSGLALQSRGRQDAYIQCAVGMRNMYHKCRLVHGDLSEYNLLFMDGILIFIDVSQSMENDHPRSMDFLRMDCRNVTSFFKRKGAHPITARSLFDFV 300
            PA     + L     ++ Y++C + +R M+HKC+LVH DLSEYNLL+ DG L+ IDVSQS+E+DHP S++FLR DC N+  FF+RKG   +T R LFDFV
Sbjct:  246 PAPLLKDVTLSETKYRELYVECILIIRKMFHKCKLVHADLSEYNLLYHDGHLVVIDVSQSVEHDHPHSLEFLRKDCTNINDFFRRKGVASMTLRELFDFV 345
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BLAST of mRNA_H-elongata_contig170233.4349.1 vs. uniprot
Match: A0A2L2YBE0_PARTP (Serine/threonine-protein kinase RIO1 (Fragment) n=2 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YBE0_PARTP)

HSP 1 Score: 118 bits (295), Expect = 2.470e-29
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 1 
Query:   55 YIQCAVGMRNMYHKCRLVHGDLSEYNLLFMDGILIFIDVSQSMENDHPRSMDFLRMDCRNVTSFFKRKGAHPITARSLFDFV 300
            YIQC   +R++YHKC+L+H DLSEYNLL+MDG  I IDVSQS+E+DHP +++FLR DC N+T +F+R G   +T R LFDFV
Sbjct:  209 YIQCVSLIRDLYHKCKLIHADLSEYNLLYMDGKAIIIDVSQSVEHDHPHALEFLRKDCTNITEYFRRNGVSVMTVRQLFDFV 290
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BLAST of mRNA_H-elongata_contig170233.4349.1 vs. uniprot
Match: A0A7S2WJR9_9STRA (Serine/threonine-protein kinase RIO1 n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WJR9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 2.550e-29
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 PAFETSGLALQSRGRQDAYIQCAVGMRNMYHKCRLVHGDLSEYNLLFMDGILIFIDVSQSMENDHPRSMDFLRMDCRNVTSFFKRKGAHPITARSLFDFVM 303
            PA       L S   + AY+QC   +R M+  CRLVHGD SEYNLL+MDG +  IDVSQS+E DHPR+++FLRMDC+N  +FFK+KG +P+T    F F++
Sbjct:  214 PAPRLKDAQLSSTKYRSAYVQCLKILRRMFQSCRLVHGDFSEYNLLWMDGTVYVIDVSQSVEMDHPRALEFLRMDCQNTNAFFKKKGLNPMTLTQTFQFIV 314
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BLAST of mRNA_H-elongata_contig170233.4349.1 vs. uniprot
Match: A0A813KDM3_POLGL (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KDM3_POLGL)

HSP 1 Score: 110 bits (276), Expect = 3.540e-29
Identity = 51/93 (54.84%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:   28 LQSRGRQDAYIQCAVGMRNMYHKCRLVHGDLSEYNLLFMDGILIFIDVSQSMENDHPRSMDFLRMDCRNVTSFFKRKGAHP-ITARSLFDFVM 303
            L + G    Y+ CAV MR M   C+LVHGDLSEYN+L+ DG+L  IDVSQS+ENDHP+++DFL+ DC NV  FF+++ A P +  + LFDFV+
Sbjct:    5 LDAAGWDRVYVDCAVLMRKMMQSCKLVHGDLSEYNMLYGDGLLYIIDVSQSVENDHPQALDFLKRDCVNVNRFFEKRIARPTLPVKRLFDFVV 97
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BLAST of mRNA_H-elongata_contig170233.4349.1 vs. uniprot
Match: A0A7S0C3V8_9STRA (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3V8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 9.970e-29
Identity = 53/101 (52.48%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:    1 PAFETSGLALQSRGRQDAYIQCAVGMRNMYHKCRLVHGDLSEYNLLFMDGILIFIDVSQSMENDHPRSMDFLRMDCRNVTSFFKRKGAHPI-TARSLFDFV 300
            P+     + L  + +++AYIQC   MR+M+H+C+LVHGDLSEYNLL+ D  +  IDVSQS+E+DHP ++DFLR DCRNV  FF++ G  P+ + R LF+FV
Sbjct:  168 PSPRLRDVTLPPKRQREAYIQCLRIMRHMFHRCKLVHGDLSEYNLLWHDNRVYVIDVSQSVEHDHPSALDFLRADCRNVNDFFRKNGDLPVMSTRQLFEFV 268
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BLAST of mRNA_H-elongata_contig170233.4349.1 vs. uniprot
Match: A0A835YHG6_9STRA (Serine/threonine-protein kinase RIO1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHG6_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.860e-28
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:   46 QDAYIQCAVGMRNMYHKCRLVHGDLSEYNLLFMDGILIFIDVSQSMENDHPRSMDFLRMDCRNVTSFFKRKGAHPITARSLFDFV 300
            Q+ Y QC   M  MY +CRLVHGDLSEYN+L+  G L  IDVSQSME DHP ++DFLRMDCRNV  FFKR+GA  +    LFD +
Sbjct:  304 QEMYDQCITHMTTMYRECRLVHGDLSEYNMLYHQGRLYIIDVSQSMEQDHPHALDFLRMDCRNVNDFFKRQGADIVGTHDLFDLI 388
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BLAST of mRNA_H-elongata_contig170233.4349.1 vs. uniprot
Match: A0A0P1AGS0_PLAHL (Serine/threonine-protein kinase RIO1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AGS0_PLAHL)

HSP 1 Score: 114 bits (285), Expect = 8.710e-28
Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:   46 QDAYIQCAVGMRNMYHKCRLVHGDLSEYNLLFMDGILIFIDVSQSMENDHPRSMDFLRMDCRNVTSFFKRKGA-HPITARSLFDFV 300
            ++ YIQC   MRNMY KCRLVHGDLSEYN+L+    L  IDVSQS+E++HP + DFLR DCRN+T FF + GA +P+T + LFDFV
Sbjct:  183 RECYIQCIKMMRNMYQKCRLVHGDLSEYNILYYQAKLYIIDVSQSVEHEHPSANDFLRNDCRNITDFFCKTGALNPMTTQELFDFV 268
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BLAST of mRNA_H-elongata_contig170233.4349.1 vs. uniprot
Match: A0A7S2UV41_9STRA (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV41_9STRA)

HSP 1 Score: 110 bits (276), Expect = 9.530e-28
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    1 PAFETSGLALQSRGRQDAYIQCAVGMRNMYHKCRLVHGDLSEYNLLFMDGILIFIDVSQSMENDHPRSMDFLRMDCRNVTSFFKRKGAHPITARSLFDFVM 303
            PA       + SR    AY  C   +R M+H C+LVHGDLSE+N+L+  G L+FIDVSQS+E  HPR++DFLR DCRNV  FF++KG   ++ R+ F++V+
Sbjct:   66 PAPRLKVAQMSSRRWGGAYWDCVKFVRVMFHTCKLVHGDLSEFNILYHQGKLVFIDVSQSVETSHPRALDFLRYDCRNVNDFFRKKGVQVLSNRAFFEYVV 166
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BLAST of mRNA_H-elongata_contig170233.4349.1 vs. uniprot
Match: A0A3N4IPW8_ASCIM (Serine/threonine-protein kinase RIO1 n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4IPW8_ASCIM)

HSP 1 Score: 114 bits (286), Expect = 1.160e-27
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query:    1 PAFETSGLALQSRGRQDAYIQCAVGMRNMYHKCRLVHGDLSEYNLLFMDGILIFIDVSQSMENDHPRSMDFLRMDCRNVTSFFKRKGAHPITARSLFDFV 300
            PA       ++       Y +C + MR MYH C+LVHGDLSEYN+L+    L  IDVSQS+E+DHPRS++FLRMD +NVT +FK+KG H  + R LFDF+
Sbjct:  300 PAPRLKDAVVEDDKYDQIYTECVMYMRIMYHVCKLVHGDLSEYNMLYHKKKLYIIDVSQSVEHDHPRSLEFLRMDIKNVTDYFKKKGVHTFSERRLFDFI 399
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170233.4349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL94_ECTSI1.270e-4474.26Non-specific serine/threonine protein kinase n=2 T... [more]
UPI000180C30B1.750e-2953.00serine/threonine-protein kinase RIO1 n=1 Tax=Ciona... [more]
A0A2L2YBE0_PARTP2.470e-2960.98Serine/threonine-protein kinase RIO1 (Fragment) n=... [more]
A0A7S2WJR9_9STRA2.550e-2952.48Serine/threonine-protein kinase RIO1 n=2 Tax=labyr... [more]
A0A813KDM3_POLGL3.540e-2954.84Non-specific serine/threonine protein kinase (Frag... [more]
A0A7S0C3V8_9STRA9.970e-2952.48Non-specific serine/threonine protein kinase (Frag... [more]
A0A835YHG6_9STRA6.860e-2861.18Serine/threonine-protein kinase RIO1 n=1 Tax=Tribo... [more]
A0A0P1AGS0_PLAHL8.710e-2861.63Serine/threonine-protein kinase RIO1 n=1 Tax=Plasm... [more]
A0A7S2UV41_9STRA9.530e-2849.50Non-specific serine/threonine protein kinase (Frag... [more]
A0A3N4IPW8_ASCIM1.160e-2752.00Serine/threonine-protein kinase RIO1 n=1 Tax=Ascob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170233contigH-elongata_contig170233:2..947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue2.6e-38
Seed eggNOG ortholog2880.D7FL94
Preferred nameRIOK1
KEGG koko:K07178
KEGG Pathwayko03008,map03008
GOsGO:0000003,GO:0001932,GO:0001933,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007548,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008406,GO:0009791,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0014013,GO:0014015,GO:0016070,GO:0016072,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022613,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030490,GO:0030684,GO:0030688,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036093,GO:0036211,GO:0040026,GO:0040028,GO:0042127,GO:0042254,GO:0042274,GO:0042325,GO:0042326,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043408,GO:0043409,GO:0043412,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045595,GO:0045597,GO:0045935,GO:0045936,GO:0046483,GO:0046578,GO:0046579,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051056,GO:0051057,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051704,GO:0051960,GO:0051962,GO:0060251,GO:0060252,GO:0060255,GO:0060284,GO:0061062,GO:0061063,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1902531,GO:1902532,GO:1902533,GO:1990234,GO:1990904,GO:2000026,GO:2000232,GO:2000234
EggNOG free text desc.positive regulation of rRNA processing
EggNOG OGsCOG1718@1,KOG2270@2759
EC2.7.11.1
COG Functional cat.DT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRIO-like kinase
Ec32 orthologEc-15_004790.1
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929992.4163976-CDS-H-elongata_contig170233:1..1271622929992.4163976-CDS-H-elongata_contig170233:1..127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170233 2..127 -
1691679238.0037346-CDS-H-elongata_contig170233:1..1271691679238.0037346-CDS-H-elongata_contig170233:1..127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170233 2..127 -
1622929992.4329026-CDS-H-elongata_contig170233:770..9471622929992.4329026-CDS-H-elongata_contig170233:770..947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170233 771..947 -
1691679238.016659-CDS-H-elongata_contig170233:770..9471691679238.016659-CDS-H-elongata_contig170233:770..947Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170233 771..947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170233.4349.1prot_H-elongata_contig170233.4349.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170233 2..947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170233.4349.1

>prot_H-elongata_contig170233.4349.1 ID=prot_H-elongata_contig170233.4349.1|Name=mRNA_H-elongata_contig170233.4349.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
PAFETSGLALQSRGRQDAYIQCAVGMRNMYHKCRLVHGDLSEYNLLFMDG
ILIFIDVSQSMENDHPRSMDFLRMDCRNVTSFFKRKGAHPITARSLFDFV
M
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mRNA from alignment at H-elongata_contig170233:2..947-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170233.4349.1 ID=mRNA_H-elongata_contig170233.4349.1|Name=mRNA_H-elongata_contig170233.4349.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=946bp|location=Sequence derived from alignment at H-elongata_contig170233:2..947- (Himanthalia elongata Himel1 dioecious)
CCAGCATTCGAAACCAGCGGCCTTGCTCTGCAATCTCGGGGTCGGCAGGA
CGCCTACATCCAATGCGCCGTGGGCATGCGAAACATGTACCACAAGTGTC
GCCTCGTGCACGGAGATCTCAGCGAATACAACTTGCTGTTCATGGACGGG
ATCCTTATTTTCATCGATGTCTCCCAGGTGACGGGACGGGATTGTTAGAT
GCTGTTGTCGACCCCCACCTCACTGGAGAGTGATACTTCAAGAGCTTGTG
CGATCTACGATTAATACCTCGAACTGCCATGGGTCTAGGGATTATATGAA
TGGTGTCTATTAATTAATACCTGGTAGTATATACTAATTATTACTGGTAC
TGTACTAATTACTAGTATCTATTAATTACTAGTGTCTATTAATTACTAGT
GCCTATTAATTACTAGTGCCTATTAATTACTAGTGTATATTAATACTAGT
GTCTTTTAATTACTAGTGTCTATTAATTACTAGTATCTATTAATTACTAG
TGTCTATTTATTACTAGTGTCTATTAATTACTAGTGTCTATTAATTACTA
GTGTCTAATAATTACTAGTGTCTATTAATTACTAGTGCTTTGGGAATGGG
TGTGGGGTGGATTTGGTGGGGAAATGGTATGGCTTGCCAGCGTATCCCAG
GTCTAATGCATCTGCCTGGAGAAAAGATGGTTGGACACTGTAGTTGAGAT
TGGAGATTGGCTGACTTTACCGCGGGGATGACCTTTCTTGTGTTCTTGTC
AACAATCTAACCCTAAAACCGCTGTTGCACTTTACGGCACTCCGACGTAT
TCTAAATGATATATTAAAAGTCAATGGAGAACGACCACCCGCGATCGATG
GACTTCCTCCGAATGGACTGCCGAAACGTGACGTCATTCTTCAAAAGAAA
GGGCGCGCACCCAATAACCGCACGATCGCTCTTCGATTTCGTCATG
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Coding sequence (CDS) from alignment at H-elongata_contig170233:2..947-

>mRNA_H-elongata_contig170233.4349.1 ID=mRNA_H-elongata_contig170233.4349.1|Name=mRNA_H-elongata_contig170233.4349.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig170233:2..947- (Himanthalia elongata Himel1 dioecious)
CCAGCATTCGAAACCAGCGGCCTTGCTCTGCAATCTCGGGGTCGGCAGGA
CGCCTACATCCAATGCGCCGTGGGCATGCGAAACATGTACCACAAGTGTC
GCCTCGTGCACGGAGATCTCAGCGAATACAACTTGCTGTTCATGGACGGG
ATCCTTATTTTCATCGATGTCTCCCAGCCAGCATTCGAAACCAGCGGCCT
TGCTCTGCAATCTCGGGGTCGGCAGGACGCCTACATCCAATGCGCCGTGG
GCATGCGAAACATGTACCACAAGTGTCGCCTCGTGCACGGAGATCTCAGC
GAATACAACTTGCTGTTCATGGACGGGATCCTTATTTTCATCGATGTCTC
CCAGTCAATGGAGAACGACCACCCGCGATCGATGGACTTCCTCCGAATGG
ACTGCCGAAACGTGACGTCATTCTTCAAAAGAAAGGGCGCGCACCCAATA
ACCGCACGATCGCTCTTCGATTTCGTCATGTCAATGGAGAACGACCACCC
GCGATCGATGGACTTCCTCCGAATGGACTGCCGAAACGTGACGTCATTCT
TCAAAAGAAAGGGCGCGCACCCAATAACCGCACGATCGCTCTTCGATTTC
GTCATG
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