prot_H-elongata_contig170201.4347.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig170201.4347.1
Unique Nameprot_H-elongata_contig170201.4347.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length107
Homology
[Close]
BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: D7G698_ECTSI (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G698_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.770e-48
Identity = 74/91 (81.32%), Postives = 86/91 (94.51%), Query Frame = 0 
Query:   16 QVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 106
            +VG+Y G VKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEY+GH++ V+CI CS DGQW+A+GD++G+LI+WEV
Sbjct:  270 EVGAYGGFVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYKGHAASVRCIACSGDGQWMATGDDNGLLIVWEV 360
[Close]
BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A6H5JI55_9PHAE (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI55_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 1.680e-47
Identity = 74/91 (81.32%), Postives = 85/91 (93.41%), Query Frame = 0 
Query:   16 QVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 106
            +VG+Y G VKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEY+GH++ V+CI CS DGQW+A+GD+ G+LI+WEV
Sbjct:  431 EVGAYGGFVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYKGHAASVRCIACSGDGQWMATGDDSGVLIVWEV 521
[Close]
BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A836CBU6_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU6_9STRA)

HSP 1 Score: 141 bits (356), Expect = 5.540e-37
Identity = 65/92 (70.65%), Postives = 77/92 (83.70%), Query Frame = 0 
Query:   16 QVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYE-GHSSRVQCITCSSDGQWLASGDEDGMLILWEV 106
            +VG+YAGL KERFERCLDLYLCPRAFKRRLNIDPESLVP+LP PR+L+PFPN LC+ Y     +RV C+  S DGQ++ASGDE G++ LWEV
Sbjct:  277 RVGAYAGLCKERFERCLDLYLCPRAFKRRLNIDPESLVPKLPHPRDLRPFPNELCLTYGVSGGARVLCLAVSDDGQYMASGDEAGVVSLWEV 368
[Close]
BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A7S2V407_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V407_9STRA)

HSP 1 Score: 137 bits (344), Expect = 5.630e-36
Identity = 60/91 (65.93%), Postives = 74/91 (81.32%), Query Frame = 0 
Query:   16 QVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 106
            +VG+Y   VK+RFERCLDLYLCPRA K RLNIDPESLVP LP+P EL+PFPN L + ++GH  RV+ ++ SSDGQ+LASG EDG + +WEV
Sbjct:  380 EVGAYKDFVKQRFERCLDLYLCPRALKHRLNIDPESLVPHLPKPSELRPFPNTLAITFKGHEQRVRAVSVSSDGQFLASGAEDGSVRVWEV 470
[Close]
BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A8J2X695_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X695_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.090e-34
Identity = 60/91 (65.93%), Postives = 72/91 (79.12%), Query Frame = 0 
Query:   16 QVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 106
            +VG Y   V+ERFERCLDLYLCPR  KRRL IDPESLVP+LP PR+LKPFPNALC  + GH++ V  + CS DGQWLA+ D+ G ++LWEV
Sbjct:  305 RVGVYEKGVQERFERCLDLYLCPRKLKRRLAIDPESLVPKLPDPRDLKPFPNALCRSFIGHTTAVVALDCSRDGQWLATADDSGRVLLWEV 395
[Close]
BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: F0YHU1_AURAN (BOP1NT domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHU1_AURAN)

HSP 1 Score: 133 bits (335), Expect = 2.820e-34
Identity = 63/94 (67.02%), Postives = 72/94 (76.60%), Query Frame = 0 
Query:   17 VGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLA----SGDEDGMLILWEV 106
            VG+Y   VKERFERCLDLYLCPRA KRRLNIDPESLVP+LP P++LKPFPNALC ++ GH + V  + CS DGQWLA    + D  G L LWEV
Sbjct:  219 VGAYEHAVKERFERCLDLYLCPRAMKRRLNIDPESLVPKLPDPKDLKPFPNALCRDFVGHDAPVVALACSPDGQWLAETRATADGAGSLRLWEV 312
[Close]
BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A7S3HLF9_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLF9_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.660e-34
Identity = 59/90 (65.56%), Postives = 70/90 (77.78%), Query Frame = 0 
Query:   17 VGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 106
            VG Y   +KERFERCLDLYLCPR  KRRLNIDPE+LVPRLP PRELKPFPN LC+++ GH   V+ +  S DGQ+LAS  +DG + LWE+
Sbjct:  392 VGGYDNFIKERFERCLDLYLCPRKLKRRLNIDPETLVPRLPSPRELKPFPNTLCLQFLGHVGAVRSVAISPDGQYLASAGDDGTVRLWEL 481
[Close]
BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A6B0S2P8_9CETA (Ribosome biogenesis protein BOP1 n=1 Tax=Bos mutus TaxID=72004 RepID=A0A6B0S2P8_9CETA)

HSP 1 Score: 131 bits (329), Expect = 2.930e-33
Identity = 58/99 (58.59%), Postives = 76/99 (76.77%), Query Frame = 0 
Query:    9 PSPPPSIQ-VGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 106
            P P PS++ V +Y   ++ERFERCLDLYLCPR  K R+N+DPE L+P+LPRPR+L+PFP    + Y GH+S V+C++ S DGQWLASG +DG + LWEV
Sbjct:  364 PRPFPSLRAVPAYGRFIQERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPFPTCQALVYRGHNSLVRCLSVSPDGQWLASGSDDGSVRLWEV 462
[Close]
BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: U6DGN8_NEOVI (Ribosome biogenesis protein BOP1 (Fragment) n=2 Tax=Mustelinae TaxID=169418 RepID=U6DGN8_NEOVI)

HSP 1 Score: 129 bits (323), Expect = 4.780e-33
Identity = 56/95 (58.95%), Postives = 74/95 (77.89%), Query Frame = 0 
Query:   13 PSIQ-VGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEV 106
            PS++ V +Y   ++ERFERCLDLYLCPR  K R+N+DPE L+P+LPRPR+L+PFP    + Y GHS+ V+C++ S DGQWLASG +DG + LWEV
Sbjct:  325 PSLRAVPAYGRFIQERFERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPFPTCQALVYRGHSNLVRCLSVSPDGQWLASGSDDGSVRLWEV 419
[Close]
BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Match: A0A5J4XXQ5_9CHLO (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XXQ5_9CHLO)

HSP 1 Score: 129 bits (325), Expect = 8.790e-33
Identity = 54/92 (58.70%), Postives = 74/92 (80.43%), Query Frame = 0 
Query:   16 QVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPESLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGMLILWEVR 107
            QV  Y+  +KERFERCLDLYLCPR+ K+R+N+DP+SLVP+LP+P++L+PFP  L + Y GH++RV+ I+  + GQWLAS  +DG + LWEVR
Sbjct:  362 QVPMYSSFIKERFERCLDLYLCPRSKKKRINVDPQSLVPKLPKPQDLQPFPTTLLLRYTGHTARVRSISPDASGQWLASASDDGSVRLWEVR 453
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170201.4347.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G698_ECTSI1.770e-4881.32Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
A0A6H5JI55_9PHAE1.680e-4781.32Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
A0A836CBU6_9STRA5.540e-3770.65Ribosome biogenesis protein BOP1 homolog n=1 Tax=T... [more]
A0A7S2V407_9STRA5.630e-3665.93Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8J2X695_9STRA2.090e-3465.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YHU1_AURAN2.820e-3467.02BOP1NT domain-containing protein n=1 Tax=Aureococc... [more]
A0A7S3HLF9_9STRA4.660e-3465.56Ribosome biogenesis protein BOP1 homolog n=1 Tax=S... [more]
A0A6B0S2P8_9CETA2.930e-3358.59Ribosome biogenesis protein BOP1 n=1 Tax=Bos mutus... [more]
U6DGN8_NEOVI4.780e-3358.95Ribosome biogenesis protein BOP1 (Fragment) n=2 Ta... [more]
A0A5J4XXQ5_9CHLO8.790e-3358.70Ribosome biogenesis protein BOP1 homolog n=1 Tax=T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 66..105
e-value: 4.3E-7
score: 39.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 72..104
e-value: 1.2E-7
score: 32.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 73..107
score: 14.318
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 56..107
e-value: 1.3E-16
score: 62.5
IPR012953BOP1, N-terminal domainPFAMPF08145BOP1NTcoord: 16..66
e-value: 3.8E-23
score: 82.7
IPR028598WD repeat BOP1/Erb1PANTHERPTHR17605RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEINcoord: 16..106
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 92..106
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 73..107
score: 13.158
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 30..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170201contigH-elongata_contig170201:759..1079 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170201.4347.1mRNA_H-elongata_contig170201.4347.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig170201 759..1079 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig170201.4347.1 ID=prot_H-elongata_contig170201.4347.1|Name=mRNA_H-elongata_contig170201.4347.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MYVYIPNCPSPPPSIQVGSYAGLVKERFERCLDLYLCPRAFKRRLNIDPE
SLVPRLPRPRELKPFPNALCVEYEGHSSRVQCITCSSDGQWLASGDEDGM
LILWEVR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR012953BOP1_N_dom
IPR028598BOP1/Erb1
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf