mRNA_H-elongata_contig1702.4346.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1702.4346.1
Unique NamemRNA_H-elongata_contig1702.4346.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1702.4346.1 vs. uniprot
Match: A0A6H5K0N2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0N2_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.420e-27
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    7 GDGFVDLQVAILCNQAACHLKLGDGAGALKVADRASAFK-VPTGSAAGMKVAYRRACALEAVGDWDEARRAFKSVLEVDPKNSKGSQVIA 273
            GD FVDLQVA+LCNQAAC LK+G    AL  A+RAS+ K V     AG+K AYRRACALEAVGDW EARRAF++VL+VDPKNS+  Q +A
Sbjct:  449 GDKFVDLQVAVLCNQAACFLKMGQALSALAAAERASSLKAVAADCPAGIKAAYRRACALEAVGDWGEARRAFRNVLDVDPKNSQCRQGLA 538
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1702.4346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0N2_9PHAE3.420e-2766.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1702contigH-elongata_contig1702:2429..2749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue4.3e-23
Seed eggNOG ortholog2880.D8LFT5
KEGG rclassRC00022,RC00929,RC02834,RC02880
KEGG koko:K00281,ko:K09571
KEGG ReactionR01221,R03425
KEGG Pathwayko00260,ko00630,ko01100,ko01110,ko01130,ko01200,ko04915,map00260,map00630,map01100,map01110,map01130,map01200,map04915
KEGG ModuleM00532
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,KOG0543@2759
EC1.4.4.2,5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFKBP and TPR domain protein
Ec32 orthologEc-01_001000.1
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929992.2085872-CDS-H-elongata_contig1702:2428..27491622929992.2085872-CDS-H-elongata_contig1702:2428..2749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1702 2429..2749 -
1691679237.9478664-CDS-H-elongata_contig1702:2428..27491691679237.9478664-CDS-H-elongata_contig1702:2428..2749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1702 2429..2749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1702.4346.1prot_H-elongata_contig1702.4346.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1702 2429..2749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1702.4346.1

>prot_H-elongata_contig1702.4346.1 ID=prot_H-elongata_contig1702.4346.1|Name=mRNA_H-elongata_contig1702.4346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
AEGDGFVDLQVAILCNQAACHLKLGDGAGALKVADRASAFKVPTGSAAGM
KVAYRRACALEAVGDWDEARRAFKSVLEVDPKNSKGSQVIANSKANNLTT
FLRFAAL
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mRNA from alignment at H-elongata_contig1702:2429..2749-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1702.4346.1 ID=mRNA_H-elongata_contig1702.4346.1|Name=mRNA_H-elongata_contig1702.4346.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig1702:2429..2749- (Himanthalia elongata Himel1 dioecious)
GCAGAAGGAGACGGTTTCGTCGATCTACAGGTGGCCATCCTGTGCAACCA
GGCCGCGTGTCACCTAAAGCTGGGAGACGGTGCTGGCGCCCTAAAAGTCG
CCGACCGAGCGTCCGCATTCAAGGTCCCCACTGGCTCCGCCGCGGGCATG
AAGGTCGCTTACCGCCGGGCATGCGCGCTTGAAGCGGTCGGGGATTGGGA
CGAGGCTCGCCGCGCCTTCAAGAGCGTGCTCGAAGTAGACCCAAAAAACT
CGAAGGGCTCTCAGGTGATTGCTAACTCGAAAGCAAATAATTTGACTACA
TTTTTGCGTTTTGCTGCTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig1702:2429..2749-

>mRNA_H-elongata_contig1702.4346.1 ID=mRNA_H-elongata_contig1702.4346.1|Name=mRNA_H-elongata_contig1702.4346.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig1702:2429..2749- (Himanthalia elongata Himel1 dioecious)
GCAGAAGGAGACGGTTTCGTCGATCTACAGGTGGCCATCCTGTGCAACCA
GGCCGCGTGTCACCTAAAGCTGGGAGACGGTGCTGGCGCCCTAAAAGTCG
CCGACCGAGCGTCCGCATTCAAGGTCCCCACTGGCTCCGCCGCGGGCATG
AAGGTCGCTTACCGCCGGGCATGCGCGCTTGAAGCGGTCGGGGATTGGGA
CGAGGCTCGCCGCGCCTTCAAGAGCGTGCTCGAAGTAGACCCAAAAAACT
CGAAGGGCTCTCAGGTGATTGCTAACTCGAAAGCAAATAATTTGACTACA
TTTTTGCGTTTTGCTGCTTTGGCAGAAGGAGACGGTTTCGTCGATCTACA
GGTGGCCATCCTGTGCAACCAGGCCGCGTGTCACCTAAAGCTGGGAGACG
GTGCTGGCGCCCTAAAAGTCGCCGACCGAGCGTCCGCATTCAAGGTCCCC
ACTGGCTCCGCCGCGGGCATGAAGGTCGCTTACCGCCGGGCATGCGCGCT
TGAAGCGGTCGGGGATTGGGACGAGGCTCGCCGCGCCTTCAAGAGCGTGC
TCGAAGTAGACCCAAAAAACTCGAAGGGCTCTCAGGTGATTGCTAACTCG
AAAGCAAATAATTTGACTACATTTTTGCGTTTTGCTGCTTTG
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