mRNA_H-elongata_contig170163.4344.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE) HSP 1 Score: 170 bits (431), Expect = 2.760e-43 Identity = 129/365 (35.34%), Postives = 185/365 (50.68%), Query Frame = 1
Query: 1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGT-KESHRWHLDCILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDRKLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQTALDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKR----ARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKSPTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKL 1074
+G +GRD +N+NG RLL A +++LS+INT+F TPK GG + F KE HR LD IL+RQ D RLVRN +V SDH LV ++R R APNRR R G + D + L D RA + + P + + A+ ++ A + P G+ S AQ + +A ++LR ++ L LK KA ++ AR L+ F + +R+ DQAG Y+H K +++EGKR S IK+ G +LRD RW WF ++LN KSPT++ D ++Q P PL P++ EV+EAV + N KAVG D++ EL+KL
Sbjct: 20 MGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK-GGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 377
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 170 bits (431), Expect = 3.070e-43 Identity = 129/365 (35.34%), Postives = 185/365 (50.68%), Query Frame = 1
Query: 1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGT-KESHRWHLDCILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDRKLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQTALDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKR----ARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKSPTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKL 1074
+G +GRD +N+NG RLL A +++LS+INT+F TPK GG + F KE HR LD IL+RQ D RLVRN +V SDH LV ++R R APNRR R G + D + L D RA + + P + + A+ ++ A + P G+ S AQ + +A ++LR ++ L LK KA ++ AR L+ F + +R+ DQAG Y+H K +++EGKR S IK+ G +LRD RW WF ++LN KSPT++ D ++Q P PL P++ EV+EAV + N KAVG D++ EL+KL
Sbjct: 158 MGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK-GGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 515
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 170 bits (431), Expect = 3.190e-43 Identity = 129/365 (35.34%), Postives = 185/365 (50.68%), Query Frame = 1
Query: 1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGT-KESHRWHLDCILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDRKLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQTALDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKR----ARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKSPTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKL 1074
+G +GRD +N+NG RLL A +++LS+INT+F TPK GG + F KE HR LD IL+RQ D RLVRN +V SDH LV ++R R APNRR R G + D + L D RA + + P + + A+ ++ A + P G+ S AQ + +A ++LR ++ L LK KA ++ AR L+ F + +R+ DQAG Y+H K +++EGKR S IK+ G +LRD RW WF ++LN KSPT++ D ++Q P PL P++ EV+EAV + N KAVG D++ EL+KL
Sbjct: 270 MGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK-GGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 627
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE) HSP 1 Score: 168 bits (425), Expect = 2.040e-42 Identity = 128/365 (35.07%), Postives = 184/365 (50.41%), Query Frame = 1
Query: 1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGT-KESHRWHLDCILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDRKLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQTALDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKR----ARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKSPTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKL 1074
+G +GRD +N+NG RLL A +++LS+INT+F TPK GG + F KE HR LD IL+RQ D RL RN +V SDH LV ++R R APNRR R G + D + L D RA + + P + + A+ ++ A + P G+ S AQ + +A ++LR ++ L LK KA ++ AR L+ F + +R+ DQAG Y+H K +++EGKR S IK+ G +LRD RW WF ++LN KSPT++ D ++Q P PL P++ EV+EAV + N KAVG D++ EL+KL
Sbjct: 391 MGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK-GGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLERNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 748
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5KL25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL25_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.850e-22 Identity = 89/285 (31.23%), Postives = 137/285 (48.07%), Query Frame = 1
Query: 1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGTKESHRWHLDCILVRQHDHRLVRNITVHPKM--KSDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDRKLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQTALDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKR----ARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASG 837
+G +GRD +N+NG RLL A +++LS+INT+F TPK GG + F K ++ LD IL+RQ D R VRN++V +DH LV ++R R APNRR R G + D + L D RA + + P + + A+ ++ A + P G+ S AQ + A + ++LR ++ + LK KA ++ AR L++F + +R+ DQAG Y+H K +++EGKR S IK+ G
Sbjct: 98 MGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQTDRRFVRNVSVKSVAFKDADHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISDASKEIKAAQQQLRGASKNSACEATLKAMLKAARKKRSIARWRALETFFEGCVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDG 376
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5JVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM9_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 2.070e-19 Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 1
Query: 646 LKVTGKAFKRARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKSPTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKL 1074
LK K AR L++F + +R+ DQAG Y+H K +++EGKR S IK+ G +LRD I RW WF ++LN KSPT++ D +++ P PL P++ EV+EAV ++ N KAVG+D++ EL+KL
Sbjct: 2 LKAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGLDDLPAELIKL 144
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5KST1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST1_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 3.250e-11 Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 1
Query: 1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGTKESHRWHLDCILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDRKLL 354
+G +GR+ +N+NG RLL A++++L++ NT+F TPK GG + F K ++ LD IL+ Q R V N++V SDH LV ++RL R PNRR+R G + D + L
Sbjct: 253 MGAYGREIMNNNGERLLGLASDNQLALTNTYFRTPK-GGGQHTFQ-SSNKGKDKYRLDFILMSQTARRFVPNVSVKRVDFKDSDHNLVLTTVRLPPRVTPNRRVRGNSGISRIRIDLERL 370
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5J5Z5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Z5_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 5.930e-10 Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 1
Query: 1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGTKESHRWHLDCILVRQHDHRLVRNITVH--PKMKSDHRLVSASIRL 276
+G +GRD++N+NG RLL A++++LS+ NT+F TPK GG + T++ + + ++HLD IL+RQ + R VRN++V SDH LV + L
Sbjct: 98 MGAYGRDSMNNNGERLLGPASDNQLSLTNTYFRTPK-GGVQH--TFQSSNKGKKYHLDFILMRQTNRRFVRNVSVKLVDFKDSDHNLVLTTAML 188
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: UPI001F135E6E (uncharacterized protein LOC124542503 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F135E6E) HSP 1 Score: 68.9 bits (167), Expect = 4.440e-9 Identity = 104/380 (27.37%), Postives = 152/380 (40.00%), Query Frame = 1
Query: 1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGT---KESHRWHL-DCILVRQHDHRLVRNITVHPKMK-----SDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDR--KLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQT--ALDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKRARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSL--------ELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKSPTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKLG 1077
LG HG +N NG LL ++ L+I NT F P Y+ T + S WHL D LVRQ D + ++T+ M+ SDHRLV + L H P R K+ + + E V K ++ +NS +T T A + L R PR+ A +D E++ A+ + LR ++ R R + + +TA+ + + K L +L G R S IK+ +G LL K +L RW E F +LN + L + +LP+ L P+++EV EA+ N KAVGVDN+ GELLK G
Sbjct: 200 LGRHGIGNMNSNGQLLLTLCSQFHLAITNTMFRLPA--------KYKTTWMHQRSKHWHLIDYALVRQQD---ISDVTITRVMRGANCWSDHRLVITKMLL----------------HLWPRRRPCKIRQFSLDLKKLESGETVDKYREA--------INSFTTTIDPAADNTTEAWNNLSANILRAAKEILDIKPRSSADW---FDDNEKLLSDALAKHRQ-LLRGKAQLNLNISDRIRQSTFELRKITRTAKDEWWQNKIEYIQWLADTKQLGEFFGGIRKLVGNSHRVSVPIKSTNGTLLVSKEDVLNRWSEHFNNLLNVDR-LADFEYLRTLPELPKREDLVQPPSLQEVIEAIKAQKNKKAVGVDNIPGELLKYG 539
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A817ZXM0_9BILA (Hypothetical protein n=4 Tax=Rotaria socialis TaxID=392032 RepID=A0A817ZXM0_9BILA) HSP 1 Score: 66.6 bits (161), Expect = 3.090e-8 Identity = 89/378 (23.54%), Postives = 161/378 (42.59%), Query Frame = 1
Query: 1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGTKESHRWH-LDCILVRQHDHRLVRNITVHPK----MKSDHRLVSASIRLLGRNAPNRRLRPE-EGHHGVPFDRKLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQTA------LDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKRARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKS-------PTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKLG 1077
+GPH D +N+NG L+ + + + + NTF+ + + + + G K RWH LD LV + V ++ V+ + +DH LV A +RL + R R + E + D + +D + ++++ KL A VN F D ++ PR+ K T +A W + + + R + LRK + R HA + E + +Q D + Y+ + L+ G+ + I++ G LL + +++RW+E+F ++LN S ++ I+ EQ+ + P P++ EV +A+ ++ N KA G+DN+ +LLK G
Sbjct: 119 IGPHTVDKINENGQHLIDFCSHNDIIVANTFYQHKTV--HQMTWKHPGNK---RWHMLDYTLVNKKFRSSVEDVRVYRNAAGAIGTDHHLVKAKLRL------HLRCRKKAEKPQCLRLDMNKIKNDNLQKK-FQEQLLNKLEG--IGAQKKTVNEKYDEFVDYVKNLGGTIFKQEQNTPRKAKEWLTDEILNLVNEKAAAFVEWQNHRQTRTERKYRVKYCLLRKLVN-------RKIHARRLEYWDEVSEEIEKAIKQHDLSTAYRVIRQLK-GGRPNVDNMPIQSKQGDLLSNSNDVMLRWREYFCDLLNVHSVIDPRIVQQISVPIISTTEQMRQDKP----PSLSEVHDAIKQMTNMKAPGIDNISADLLKAG 470 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig170163.4344.1 >prot_H-elongata_contig170163.4344.1 ID=prot_H-elongata_contig170163.4344.1|Name=mRNA_H-elongata_contig170163.4344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=360bp LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGTKback to top mRNA from alignment at H-elongata_contig170163:256..1335+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig170163.4344.1 ID=mRNA_H-elongata_contig170163.4344.1|Name=mRNA_H-elongata_contig170163.4344.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1080bp|location=Sequence derived from alignment at H-elongata_contig170163:256..1335+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig170163:256..1335+ >mRNA_H-elongata_contig170163.4344.1 ID=mRNA_H-elongata_contig170163.4344.1|Name=mRNA_H-elongata_contig170163.4344.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2160bp|location=Sequence derived from alignment at H-elongata_contig170163:256..1335+ (Himanthalia elongata Himel1 dioecious)back to top |