mRNA_H-elongata_contig170163.4344.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170163.4344.1
Unique NamemRNA_H-elongata_contig170163.4344.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 2.760e-43
Identity = 129/365 (35.34%), Postives = 185/365 (50.68%), Query Frame = 1
Query:    1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGT-KESHRWHLDCILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDRKLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQTALDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKR----ARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKSPTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKL 1074
            +G +GRD +N+NG RLL  A +++LS+INT+F TPK GG  + F      KE HR  LD IL+RQ D RLVRN +V       SDH LV  ++R   R APNRR R   G   +  D + L  D   RA      + + P +  +         A+    ++   A +  P         G+  S  AQ  + +A        ++LR   ++  L   LK   KA ++    AR   L+ F      +    +R+ DQAG Y+H K +++EGKR   S  IK+  G +LRD      RW  WF ++LN KSPT++    D ++Q P   PL   P++ EV+EAV  + N KAVG D++  EL+KL
Sbjct:   20 MGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK-GGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 377          
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 3.070e-43
Identity = 129/365 (35.34%), Postives = 185/365 (50.68%), Query Frame = 1
Query:    1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGT-KESHRWHLDCILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDRKLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQTALDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKR----ARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKSPTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKL 1074
            +G +GRD +N+NG RLL  A +++LS+INT+F TPK GG  + F      KE HR  LD IL+RQ D RLVRN +V       SDH LV  ++R   R APNRR R   G   +  D + L  D   RA      + + P +  +         A+    ++   A +  P         G+  S  AQ  + +A        ++LR   ++  L   LK   KA ++    AR   L+ F      +    +R+ DQAG Y+H K +++EGKR   S  IK+  G +LRD      RW  WF ++LN KSPT++    D ++Q P   PL   P++ EV+EAV  + N KAVG D++  EL+KL
Sbjct:  158 MGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK-GGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 515          
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 3.190e-43
Identity = 129/365 (35.34%), Postives = 185/365 (50.68%), Query Frame = 1
Query:    1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGT-KESHRWHLDCILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDRKLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQTALDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKR----ARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKSPTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKL 1074
            +G +GRD +N+NG RLL  A +++LS+INT+F TPK GG  + F      KE HR  LD IL+RQ D RLVRN +V       SDH LV  ++R   R APNRR R   G   +  D + L  D   RA      + + P +  +         A+    ++   A +  P         G+  S  AQ  + +A        ++LR   ++  L   LK   KA ++    AR   L+ F      +    +R+ DQAG Y+H K +++EGKR   S  IK+  G +LRD      RW  WF ++LN KSPT++    D ++Q P   PL   P++ EV+EAV  + N KAVG D++  EL+KL
Sbjct:  270 MGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK-GGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 627          
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 2.040e-42
Identity = 128/365 (35.07%), Postives = 184/365 (50.41%), Query Frame = 1
Query:    1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGT-KESHRWHLDCILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDRKLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQTALDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKR----ARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKSPTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKL 1074
            +G +GRD +N+NG RLL  A +++LS+INT+F TPK GG  + F      KE HR  LD IL+RQ D RL RN +V       SDH LV  ++R   R APNRR R   G   +  D + L  D   RA      + + P +  +         A+    ++   A +  P         G+  S  AQ  + +A        ++LR   ++  L   LK   KA ++    AR   L+ F      +    +R+ DQAG Y+H K +++EGKR   S  IK+  G +LRD      RW  WF ++LN KSPT++    D ++Q P   PL   P++ EV+EAV  + N KAVG D++  EL+KL
Sbjct:  391 MGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK-GGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLERNASVKRVDFKDSDHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISEASREIRVAQQQLRGASKNSDLETTLKAKLKAARKKRSSARWRALEKFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRPLTSQNIKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIKL 748          
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5KL25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL25_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.850e-22
Identity = 89/285 (31.23%), Postives = 137/285 (48.07%), Query Frame = 1
Query:    1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGTKESHRWHLDCILVRQHDHRLVRNITVHPKM--KSDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDRKLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQTALDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKR----ARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASG 837
            +G +GRD +N+NG RLL  A +++LS+INT+F TPK GG  + F     K   ++ LD IL+RQ D R VRN++V       +DH LV  ++R   R APNRR R   G   +  D + L  D   RA      + + P +  +         A+    ++   A +  P         G+  S  AQ  +  A    +   ++LR   ++ +    LK   KA ++    AR   L++F      +    +R+ DQAG Y+H K +++EGKR   S  IK+  G
Sbjct:   98 MGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPK-GGVQHTFQ-SSNKGKEKYRLDFILMRQTDRRFVRNVSVKSVAFKDADHNLVHTTVRSPPRVAPNRRTRGNSGSSRIRIDLERLRKDVHLRAVFQDRALNRPPPTALSR---PTGETAAELTAVVMSAAAEIAPLARSARGKGGWYTSE-AQHEISDASKEIKAAQQQLRGASKNSACEATLKAMLKAARKKRSIARWRALETFFEGCVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDG 376          
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5JVM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM9_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.070e-19
Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 1
Query:  646 LKVTGKAFKRARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKSPTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKL 1074
            LK   K    AR   L++F      +    +R+ DQAG Y+H K +++EGKR   S  IK+  G +LRD   I  RW  WF ++LN KSPT++    D +++ P   PL   P++ EV+EAV ++ N KAVG+D++  EL+KL
Sbjct:    2 LKAARKKRSIARWRALETFFEGYVRQLEKKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGLDDLPAELIKL 144          
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5KST1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.250e-11
Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGTKESHRWHLDCILVRQHDHRLVRNITVHPK--MKSDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDRKLL 354
            +G +GR+ +N+NG RLL  A++++L++ NT+F TPK GG  + F     K   ++ LD IL+ Q   R V N++V       SDH LV  ++RL  R  PNRR+R   G   +  D + L
Sbjct:  253 MGAYGREIMNNNGERLLGLASDNQLALTNTYFRTPK-GGGQHTFQ-SSNKGKDKYRLDFILMSQTARRFVPNVSVKRVDFKDSDHNLVLTTVRLPPRVTPNRRVRGNSGISRIRIDLERL 370          
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A6H5J5Z5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Z5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 5.930e-10
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 1
Query:    1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGTKESHRWHLDCILVRQHDHRLVRNITVH--PKMKSDHRLVSASIRL 276
            +G +GRD++N+NG RLL  A++++LS+ NT+F TPK GG  +  T++ + +  ++HLD IL+RQ + R VRN++V       SDH LV  +  L
Sbjct:   98 MGAYGRDSMNNNGERLLGPASDNQLSLTNTYFRTPK-GGVQH--TFQSSNKGKKYHLDFILMRQTNRRFVRNVSVKLVDFKDSDHNLVLTTAML 188          
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: UPI001F135E6E (uncharacterized protein LOC124542503 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F135E6E)

HSP 1 Score: 68.9 bits (167), Expect = 4.440e-9
Identity = 104/380 (27.37%), Postives = 152/380 (40.00%), Query Frame = 1
Query:    1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGT---KESHRWHL-DCILVRQHDHRLVRNITVHPKMK-----SDHRLVSASIRLLGRNAPNRRLRPEEGHHGVPFDR--KLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQT--ALDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKRARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSL--------ELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKSPTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKLG 1077
            LG HG   +N NG  LL   ++  L+I NT F  P          Y+ T   + S  WHL D  LVRQ D   + ++T+   M+     SDHRLV   + L                H  P  R  K+       +   + E V K  ++        +NS  +T       T  A + L     R         PR+ A     +D  E++     A+ +   LR   ++      R R +  +     +TA+      + +        K L        +L G   R S  IK+ +G LL  K  +L RW E F  +LN      +   L  + +LP+   L   P+++EV EA+    N KAVGVDN+ GELLK G
Sbjct:  200 LGRHGIGNMNSNGQLLLTLCSQFHLAITNTMFRLPA--------KYKTTWMHQRSKHWHLIDYALVRQQD---ISDVTITRVMRGANCWSDHRLVITKMLL----------------HLWPRRRPCKIRQFSLDLKKLESGETVDKYREA--------INSFTTTIDPAADNTTEAWNNLSANILRAAKEILDIKPRSSADW---FDDNEKLLSDALAKHRQ-LLRGKAQLNLNISDRIRQSTFELRKITRTAKDEWWQNKIEYIQWLADTKQLGEFFGGIRKLVGNSHRVSVPIKSTNGTLLVSKEDVLNRWSEHFNNLLNVDR-LADFEYLRTLPELPKREDLVQPPSLQEVIEAIKAQKNKKAVGVDNIPGELLKYG 539          
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Match: A0A817ZXM0_9BILA (Hypothetical protein n=4 Tax=Rotaria socialis TaxID=392032 RepID=A0A817ZXM0_9BILA)

HSP 1 Score: 66.6 bits (161), Expect = 3.090e-8
Identity = 89/378 (23.54%), Postives = 161/378 (42.59%), Query Frame = 1
Query:    1 LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGTKESHRWH-LDCILVRQHDHRLVRNITVHPK----MKSDHRLVSASIRLLGRNAPNRRLRPE-EGHHGVPFDRKLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNSVASTFADILRQTA------LDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVWEKLRARPQDPSLRKALKVTGKAFKRARHAELQSFLCEQTARTVDLTRQRDQAGLYQHNKSLELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEILNAKS-------PTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDNVCGELLKLG 1077
            +GPH  D +N+NG  L+   + + + + NTF+    +  +   + + G K   RWH LD  LV +     V ++ V+      + +DH LV A +RL      + R R + E    +  D   + +D   +    ++++ KL      A    VN     F D ++             PR+ K   T         +A     W    +   + + R +   LRK +        R  HA    +  E +       +Q D +  Y+  + L+  G+    +  I++  G LL +   +++RW+E+F ++LN  S         ++  I+   EQ+ +  P    P++ EV +A+ ++ N KA G+DN+  +LLK G
Sbjct:  119 IGPHTVDKINENGQHLIDFCSHNDIIVANTFYQHKTV--HQMTWKHPGNK---RWHMLDYTLVNKKFRSSVEDVRVYRNAAGAIGTDHHLVKAKLRL------HLRCRKKAEKPQCLRLDMNKIKNDNLQKK-FQEQLLNKLEG--IGAQKKTVNEKYDEFVDYVKNLGGTIFKQEQNTPRKAKEWLTDEILNLVNEKAAAFVEWQNHRQTRTERKYRVKYCLLRKLVN-------RKIHARRLEYWDEVSEEIEKAIKQHDLSTAYRVIRQLK-GGRPNVDNMPIQSKQGDLLSNSNDVMLRWREYFCDLLNVHSVIDPRIVQQISVPIISTTEQMRQDKP----PSLSEVHDAIKQMTNMKAPGIDNISADLLKAG 470          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170163.4344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5K8Z5_9PHAE2.760e-4335.34Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KC90_9PHAE3.070e-4335.34Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE3.190e-4335.34Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDI8_9PHAE2.040e-4235.07Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KL25_9PHAE1.850e-2231.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVM9_9PHAE2.070e-1939.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KST1_9PHAE3.250e-1138.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5Z5_9PHAE5.930e-1042.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI001F135E6E4.440e-927.37uncharacterized protein LOC124542503 n=1 Tax=Vanes... [more]
A0A817ZXM0_9BILA3.090e-823.54Hypothetical protein n=4 Tax=Rotaria socialis TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170163contigH-elongata_contig170163:256..1335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score78.2
Seed ortholog evalue8.8e-12
Seed eggNOG ortholog13735.ENSPSIP00000000104
KEGG koko:K04257
KEGG Pathwayko04740,map04740
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs39TZY@33154,3BI15@33208,3CYKV@33213,487I3@7711,4962T@7742,4CKCN@8459,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04030
Hectar predicted targeting categoryother localisation
Exons1
Model size1080
Cds size1080
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929991.991728-CDS-H-elongata_contig170163:255..13351622929991.991728-CDS-H-elongata_contig170163:255..1335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170163 256..1335 +
1691679237.8063936-CDS-H-elongata_contig170163:255..13351691679237.8063936-CDS-H-elongata_contig170163:255..1335Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170163 256..1335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170163.4344.1prot_H-elongata_contig170163.4344.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170163 256..1335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170163.4344.1

>prot_H-elongata_contig170163.4344.1 ID=prot_H-elongata_contig170163.4344.1|Name=mRNA_H-elongata_contig170163.4344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=360bp
LGPHGRDTLNDNGLRLLACATEHKLSIINTFFSTPKLGGNSNAFTYEGTK
ESHRWHLDCILVRQHDHRLVRNITVHPKMKSDHRLVSASIRLLGRNAPNR
RLRPEEGHHGVPFDRKLLMSDQRWRATVAQEIVTKLPDSTFAAGIPDVNS
VASTFADILRQTALDTLPRRPKRPTTRGFSESPRAQARLRQAWDVRERVW
EKLRARPQDPSLRKALKVTGKAFKRARHAELQSFLCEQTARTVDLTRQRD
QAGLYQHNKSLELEGKRGRKSTYIKNASGVLLRDKPSILVRWKEWFQEIL
NAKSPTLNASILDGIEQLPEHAPLAAEPTVEEVKEAVGKLGNGKAVGVDN
VCGELLKLGL
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mRNA from alignment at H-elongata_contig170163:256..1335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170163.4344.1 ID=mRNA_H-elongata_contig170163.4344.1|Name=mRNA_H-elongata_contig170163.4344.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1080bp|location=Sequence derived from alignment at H-elongata_contig170163:256..1335+ (Himanthalia elongata Himel1 dioecious)
TTGGGACCACACGGCAGAGATACTCTCAATGACAACGGTTTGCGACTTCT AGCATGTGCTACCGAGCACAAGCTGTCGATTATCAACACTTTTTTCAGTA CGCCAAAGCTTGGGGGAAACTCAAATGCGTTCACATACGAGGGGACGAAG GAATCCCACCGCTGGCACCTGGACTGCATCCTGGTACGCCAGCATGACCA CAGGCTCGTCCGGAATATCACTGTCCACCCGAAGATGAAATCAGACCACC GCTTGGTTTCAGCTTCCATCCGCCTCCTAGGACGGAACGCACCCAACCGC CGTCTGAGACCGGAAGAAGGGCACCACGGGGTACCCTTCGACCGGAAACT CCTGATGTCTGATCAGCGCTGGAGGGCGACTGTAGCACAGGAAATTGTCA CCAAGCTTCCTGACTCCACCTTCGCCGCTGGTATACCGGACGTCAACTCC GTGGCCTCTACGTTCGCCGACATCTTGCGACAAACAGCCCTAGACACACT CCCTCGCCGCCCAAAGCGTCCCACTACAAGAGGCTTTAGCGAGTCCCCAC GAGCCCAAGCACGCCTCCGACAAGCATGGGACGTCAGAGAACGCGTGTGG GAGAAACTGCGTGCTCGCCCCCAGGACCCAAGTCTAAGGAAGGCGTTGAA AGTGACAGGCAAGGCGTTCAAACGGGCTAGGCACGCGGAGCTACAGAGCT TCCTGTGTGAGCAAACCGCCAGGACCGTGGACCTCACCCGCCAGAGGGAC CAGGCAGGACTGTACCAGCACAACAAGTCGCTAGAGCTGGAAGGGAAGAG GGGGCGTAAATCAACCTATATCAAGAACGCTTCTGGCGTGTTGTTGCGGG ACAAGCCGTCTATCCTAGTTCGGTGGAAAGAGTGGTTCCAGGAGATCCTG AACGCGAAATCGCCGACTCTCAACGCCTCTATCCTCGACGGTATCGAGCA GTTGCCCGAACACGCCCCGCTTGCGGCCGAGCCCACGGTGGAGGAAGTGA AGGAGGCAGTGGGCAAGCTGGGGAACGGCAAGGCTGTCGGCGTCGACAAT GTCTGCGGTGAACTGCTGAAGCTCGGTCTC
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Coding sequence (CDS) from alignment at H-elongata_contig170163:256..1335+

>mRNA_H-elongata_contig170163.4344.1 ID=mRNA_H-elongata_contig170163.4344.1|Name=mRNA_H-elongata_contig170163.4344.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2160bp|location=Sequence derived from alignment at H-elongata_contig170163:256..1335+ (Himanthalia elongata Himel1 dioecious)
TTGGGACCACACGGCAGAGATACTCTCAATGACAACGGTTTGCGACTTCT
AGCATGTGCTACCGAGCACAAGCTGTCGATTATCAACACTTTTTTCAGTA
CGCCAAAGCTTGGGGGAAACTCAAATGCGTTCACATACGAGGGGACGAAG
GAATCCCACCGCTGGCACCTGGACTGCATCCTGGTACGCCAGCATGACCA
CAGGCTCGTCCGGAATATCACTGTCCACCCGAAGATGAAATCAGACCACC
GCTTGGTTTCAGCTTCCATCCGCCTCCTAGGACGGAACGCACCCAACCGC
CGTCTGAGACCGGAAGAAGGGCACCACGGGGTACCCTTCGACCGGAAACT
CCTGATGTCTGATCAGCGCTGGAGGGCGACTGTAGCACAGGAAATTGTCA
CCAAGCTTCCTGACTCCACCTTCGCCGCTGGTATACCGGACGTCAACTCC
GTGGCCTCTACGTTCGCCGACATCTTGCGACAAACAGCCCTAGACACACT
CCCTCGCCGCCCAAAGCGTCCCACTACAAGAGGCTTTAGCGAGTCCCCAC
GAGCCCAAGCACGCCTCCGACAAGCATGGGACGTCAGAGAACGCGTGTGG
GAGAAACTGCGTGCTCGCCCCCAGGACCCAAGTCTAAGGAAGGCGTTGAA
AGTGACAGGCAAGGCGTTCAAACGGGCTAGGCACGCGGAGCTACAGAGCT
TCCTGTGTGAGCAAACCGCCAGGACCGTGGACCTCACCCGCCAGAGGGAC
CAGGCAGGACTGTACCAGCACAACAAGTCGCTAGAGCTGGAAGGGAAGAG
GGGGCGTAAATCAACCTATATCAAGAACGCTTCTGGCGTGTTGTTGCGGG
ACAAGCCGTCTATCCTAGTTCGGTGGAAAGAGTGGTTCCAGGAGATCCTG
AACGCGAAATCGCCGACTCTCAACGCCTCTATCCTCGACGGTATCGAGCA
GTTGCCCGAACACGCCCCGCTTGCGGCCGAGCCCACGGTGGAGGAAGTGA
AGGAGGCAGTGGGCAAGCTGGGGAACGGCAAGGCTGTCGGCGTCGACAAT
GTCTGCGGTGAACTGCTGAAGCTCGGTCTCTTGGGACCACACGGCAGAGA
TACTCTCAATGACAACGGTTTGCGACTTCTAGCATGTGCTACCGAGCACA
AGCTGTCGATTATCAACACTTTTTTCAGTACGCCAAAGCTTGGGGGAAAC
TCAAATGCGTTCACATACGAGGGGACGAAGGAATCCCACCGCTGGCACCT
GGACTGCATCCTGGTACGCCAGCATGACCACAGGCTCGTCCGGAATATCA
CTGTCCACCCGAAGATGAAATCAGACCACCGCTTGGTTTCAGCTTCCATC
CGCCTCCTAGGACGGAACGCACCCAACCGCCGTCTGAGACCGGAAGAAGG
GCACCACGGGGTACCCTTCGACCGGAAACTCCTGATGTCTGATCAGCGCT
GGAGGGCGACTGTAGCACAGGAAATTGTCACCAAGCTTCCTGACTCCACC
TTCGCCGCTGGTATACCGGACGTCAACTCCGTGGCCTCTACGTTCGCCGA
CATCTTGCGACAAACAGCCCTAGACACACTCCCTCGCCGCCCAAAGCGTC
CCACTACAAGAGGCTTTAGCGAGTCCCCACGAGCCCAAGCACGCCTCCGA
CAAGCATGGGACGTCAGAGAACGCGTGTGGGAGAAACTGCGTGCTCGCCC
CCAGGACCCAAGTCTAAGGAAGGCGTTGAAAGTGACAGGCAAGGCGTTCA
AACGGGCTAGGCACGCGGAGCTACAGAGCTTCCTGTGTGAGCAAACCGCC
AGGACCGTGGACCTCACCCGCCAGAGGGACCAGGCAGGACTGTACCAGCA
CAACAAGTCGCTAGAGCTGGAAGGGAAGAGGGGGCGTAAATCAACCTATA
TCAAGAACGCTTCTGGCGTGTTGTTGCGGGACAAGCCGTCTATCCTAGTT
CGGTGGAAAGAGTGGTTCCAGGAGATCCTGAACGCGAAATCGCCGACTCT
CAACGCCTCTATCCTCGACGGTATCGAGCAGTTGCCCGAACACGCCCCGC
TTGCGGCCGAGCCCACGGTGGAGGAAGTGAAGGAGGCAGTGGGCAAGCTG
GGGAACGGCAAGGCTGTCGGCGTCGACAATGTCTGCGGTGAACTGCTGAA
GCTCGGTCTC
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